Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 1.9e-92 342.4 165 100.0
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 3.2e-84 315.1 158 96.2
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 3.2e-84 315.1 158 96.2
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 3.2e-84 315.1 158 96.2
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 2.1e-83 312.4 165 92.1
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 4.8e-80 301.2 165 87.9
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 4.1e-79 298.1 165 85.5
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 7.7e-78 293.9 165 86.1
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 1.7e-77 292.7 165 83.6
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 2.1e-75 285.8 138 98.6
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 1.0e-74 283.5 165 84.8
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 4.1e-63 245.0 121 95.9
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 9.2e-63 243.8 168 71.4
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 1.1e-55 220.3 159 67.9
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 3.5e-30 135.6 96 60.4
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 1.0e-29 134.0 96 58.3
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 1.0e-29 134.0 96 60.4
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 1.3e-29 133.7 101 56.4
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.7e-29 133.3 96 57.3
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 3.9e-29 132.1 96 57.3
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 4.3e-28 128.6 121 44.6
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 9.6e-28 127.5 98 55.1
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 1.6e-27 126.7 163 41.1
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 1.6e-27 126.7 95 58.9
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 3.6e-27 125.6 130 45.4
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 3.6e-27 125.6 132 41.7
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 3.6e-27 125.6 96 58.3
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 4.8e-27 125.2 130 44.6
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 4.8e-27 125.2 134 47.0
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 8.1e-27 124.4 126 45.2
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 1.1e-26 124.0 118 44.9
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 1.4e-26 123.6 117 50.4
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 1.4e-26 123.6 132 48.5
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 1.4e-26 123.6 96 57.3
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 1.4e-26 123.6 99 50.5
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 1.8e-26 123.2 98 52.0
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 2.4e-26 122.9 118 44.9
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 3.1e-26 122.5 99 54.5
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 3.1e-26 122.5 94 54.3
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 4.0e-26 122.1 120 45.0
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 4.0e-26 122.1 128 49.2
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 5.3e-26 121.7 99 52.5
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 6.9e-26 121.3 95 53.7
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 6.9e-26 121.3 99 56.6
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 9.0e-26 120.9 95 53.7
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 1.2e-25 120.6 104 48.1
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 1.5e-25 120.2 129 43.4
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 1.5e-25 120.2 110 50.9
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.5e-25 120.2 110 50.9
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 2.0e-25 119.8 124 47.6
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 2.6e-25 119.4 99 50.5
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.6e-25 119.4 110 50.9
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 3.4e-25 119.0 86 60.5
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 3.4e-25 119.0 96 52.1
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 4.5e-25 118.6 111 45.9
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 4.5e-25 118.6 111 45.9
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 4.5e-25 118.6 109 52.3
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 5.8e-25 118.2 129 46.5
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 5.8e-25 118.2 134 43.3
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 5.8e-25 118.2 146 38.4
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 5.8e-25 118.2 104 51.0
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 7.6e-25 117.9 98 46.9
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 9.9e-25 117.5 106 45.3
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 9.9e-25 117.5 106 45.3
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 1.3e-24 117.1 118 44.1
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.3e-24 117.1 110 50.0
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.3e-24 117.1 106 45.3
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.3e-24 117.1 106 45.3
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 1.3e-24 117.1 131 42.7
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 1.7e-24 116.7 97 49.5
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 1.7e-24 116.7 118 44.9
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 1.7e-24 116.7 101 51.5
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 2.2e-24 116.3 98 48.0
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 2.2e-24 116.3 128 44.5
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.2e-24 116.3 140 40.0
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 2.2e-24 116.3 144 38.2
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 2.9e-24 115.9 129 40.3
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 2.9e-24 115.9 122 45.1
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 2.9e-24 115.9 122 45.1
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 2.9e-24 115.9 98 45.9
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 3.8e-24 115.5 109 45.0
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 3.8e-24 115.5 93 49.5
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 3.8e-24 115.5 139 40.3
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 3.8e-24 115.5 98 50.0
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 4.9e-24 115.2 131 42.0
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 4.9e-24 115.2 126 42.1
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 4.9e-24 115.2 98 46.9
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 4.9e-24 115.2 103 45.6
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 6.4e-24 114.8 102 52.0
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 8.4e-24 114.4 125 42.4
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 8.4e-24 114.4 123 42.3
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 8.4e-24 114.4 135 40.7
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 8.4e-24 114.4 93 53.8
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 1.4e-23 113.6 131 40.5
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 1.4e-23 113.6 98 49.0
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 1.4e-23 113.6 110 49.1
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 1.9e-23 113.2 96 47.9
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 2.4e-23 112.8 98 49.0
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 2.4e-23 112.8 122 43.4
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 3.2e-23 112.5 126 43.7
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 3.2e-23 112.5 98 45.9
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 3.2e-23 112.5 102 46.1
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 3.2e-23 112.5 95 51.6
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 4.2e-23 112.1 107 47.7
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 7.1e-23 111.3 119 42.0
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 7.1e-23 111.3 114 44.7
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 1.6e-22 110.2 122 45.9
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 1.6e-22 110.2 96 44.8
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 2.1e-22 109.8 98 46.9
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 2.7e-22 109.4 92 50.0
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.7e-22 109.4 108 49.1
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 2.7e-22 109.4 83 51.8
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 3.5e-22 109.0 165 33.3
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 3.5e-22 109.0 95 45.3
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 4.6e-22 108.6 124 39.5
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 4.6e-22 108.6 95 50.5
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 4.6e-22 108.6 109 46.8
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 4.6e-22 108.6 101 48.5
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 6.0e-22 108.2 107 45.8
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 6.0e-22 108.2 136 38.2
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 6.0e-22 108.2 109 40.4
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 1.8e-21 106.7 123 42.3
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 2.3e-21 106.3 113 42.5
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 2.3e-21 106.3 98 44.9
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 3.0e-21 105.9 112 42.0
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 3.0e-21 105.9 128 43.0
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 3.0e-21 105.9 97 46.4
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 6.7e-21 104.8 98 42.9
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 8.7e-21 104.4 118 40.7
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 1.1e-20 104.0 98 42.9
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 1.1e-20 104.0 107 44.9
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.5e-20 103.6 98 42.9
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 1.5e-20 103.6 107 44.9
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 1.5e-20 103.6 107 44.9
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 1.9e-20 103.2 146 37.7
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 1.9e-20 103.2 102 46.1
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 2.5e-20 102.8 135 38.5
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 3.3e-20 102.4 106 41.5
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 3.3e-20 102.4 91 46.2
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 4.3e-20 102.1 96 43.8
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 4.3e-20 102.1 96 46.9
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 5.6e-20 101.7 119 40.3
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 5.6e-20 101.7 127 41.7
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 7.4e-20 101.3 112 41.1
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 9.6e-20 100.9 128 39.8
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 1.3e-19 100.5 92 47.8
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 1.6e-19 100.1 136 39.0
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 4.8e-19 98.6 121 43.8
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 4.8e-19 98.6 86 48.8
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 1.1e-18 97.4 87 46.0
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 2.4e-18 96.3 93 45.2
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 3.1e-18 95.9 146 39.0
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 3.1e-18 95.9 128 39.1
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 3.1e-18 95.9 70 58.6
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 4.0e-18 95.5 128 39.1
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 5.3e-18 95.1 128 39.1
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 5.3e-18 95.1 128 39.1
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 6.9e-18 94.7 128 39.1
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 6.9e-18 94.7 128 39.1
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 1.5e-17 93.6 68 57.4
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 5.8e-17 91.7 107 37.4
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.3e-16 90.5 92 44.6
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 2.2e-16 89.7 127 41.7
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 2.2e-16 89.7 133 37.6
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 2.9e-16 89.4 99 39.4
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 3.8e-16 89.0 127 38.6
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 3.2e-15 85.9 89 43.8
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 2.1e-14 83.2 94 43.6
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 2.3e-13 79.7 61 54.1
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 5.1e-13 78.6 114 36.0
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 7.4e-12 74.7 94 36.2
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 4.0e-10 68.9 57 47.4
Sabra05G0012900 Salix brachista HOM05D002444 ORTHO05D004748 1.7e-08 63.5 108 39.8
Lsat_1_v5_gn_9_13661 Lactuca sativa HOM05D008739 ORTHO05D010871 4.9e-08 62.0 82 34.1
Actinidia31640 Actinidia chinensis HOM05D008739 ORTHO05D010871 8.4e-08 61.2 70 35.7
HPP92_002049 Vanilla planifolia HOM05D040614 ORTHO05D036980 4.2e-07 58.9 82 32.9
Ciclev10003751m.g Citrus clementina HOM05D002444 ORTHO05D004748 9.3e-07 57.8 65 41.5
HanXRQChr08g0230271 Helianthus annuus HOM05D008739 ORTHO05D010871 1.2e-06 57.4 82 35.4
Cfa015454 Carpinus fangiana HOM05D002444 ORTHO05D004748 1.6e-06 57.0 59 37.3
Sopen06g002410 Solanum pennellii HOM05D008739 ORTHO05D010871 3.5e-06 55.8 82 39.0
ATR1127G131 Amborella trichopoda HOM05D008739 ORTHO05D010871 7.9e-06 54.7 69 34.8
Peaxi162Scf00131g00137 Petunia axillaris HOM05D008739 ORTHO05D010871 7.9e-06 54.7 79 39.2


User provided reference genes

Program Settings