Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 1.0e-166 590.1 320 100.0
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 5.0e-150 534.6 324 82.7
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 1.3e-142 510.0 310 81.9
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 1.3e-142 510.0 310 81.9
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 9.2e-136 487.3 324 76.5
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 2.1e-124 449.5 322 71.7
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 5.1e-118 428.3 336 67.0
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 8.7e-118 427.6 342 66.7
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 1.1e-117 427.2 328 67.4
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 1.2e-114 417.2 352 65.1
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 3.4e-114 415.6 343 63.6
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 2.4e-107 392.9 331 61.3
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 1.2e-95 354.0 246 68.7
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 3.0e-94 349.4 242 69.0
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 1.5e-93 347.1 273 63.0
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 1.5e-93 347.1 218 71.6
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 1.9e-93 346.7 276 61.6
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 3.3e-93 345.9 273 62.6
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 7.4e-93 344.7 237 70.0
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.6e-92 343.6 273 62.6
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 1.6e-92 343.6 228 70.2
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 2.8e-92 342.8 320 55.9
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 2.8e-92 342.8 318 56.6
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 2.8e-92 342.8 234 70.5
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 8.2e-92 341.3 266 62.8
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 1.1e-91 340.9 256 64.5
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 1.1e-91 340.9 213 74.2
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 1.8e-91 340.1 244 66.8
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 1.8e-91 340.1 244 66.8
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 2.4e-91 339.7 235 68.9
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 2.4e-91 339.7 257 65.0
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 2.4e-91 339.7 269 63.2
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 3.1e-91 339.3 322 56.8
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 4.1e-91 339.0 255 64.3
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 4.1e-91 339.0 216 71.8
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 5.3e-91 338.6 212 74.1
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 5.3e-91 338.6 247 66.4
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 5.3e-91 338.6 266 62.4
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 5.3e-91 338.6 261 63.6
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 6.9e-91 338.2 273 61.9
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 9.1e-91 337.8 293 59.0
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 9.1e-91 337.8 264 62.9
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 9.1e-91 337.8 278 64.4
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 1.2e-90 337.4 270 63.0
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 1.5e-90 337.0 263 62.0
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 1.5e-90 337.0 257 63.8
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 2.0e-90 336.7 270 61.9
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 2.6e-90 336.3 318 54.4
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 3.4e-90 335.9 269 63.2
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 5.9e-90 335.1 243 65.4
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 7.7e-90 334.7 212 72.6
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 1.3e-89 334.0 266 62.8
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 1.3e-89 334.0 224 68.8
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 2.2e-89 333.2 270 63.3
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 2.9e-89 332.8 321 54.8
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 2.9e-89 332.8 240 65.0
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 2.9e-89 332.8 267 61.4
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 1.1e-88 330.9 268 61.6
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 1.1e-88 330.9 216 71.3
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 1.1e-88 330.9 215 73.0
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 1.4e-88 330.5 245 66.1
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 1.4e-88 330.5 267 61.0
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 1.9e-88 330.1 218 70.2
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 2.5e-88 329.7 223 67.7
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 2.5e-88 329.7 212 70.3
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 5.5e-88 328.6 215 70.2
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 5.5e-88 328.6 212 72.6
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 5.5e-88 328.6 215 69.3
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 9.4e-88 327.8 212 69.3
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 1.2e-87 327.4 317 54.3
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 1.2e-87 327.4 239 63.6
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 2.7e-87 326.2 216 68.5
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 2.7e-87 326.2 215 70.7
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 4.6e-87 325.5 216 68.1
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 7.9e-87 324.7 243 65.0
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 7.9e-87 324.7 246 64.6
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 1.4e-86 323.9 268 60.8
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 1.8e-86 323.6 213 70.0
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 1.8e-86 323.6 215 68.8
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 2.3e-86 323.2 255 62.7
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 3.0e-86 322.8 218 69.3
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 3.9e-86 322.4 252 62.7
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 8.8e-86 321.2 262 60.3
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 8.8e-86 321.2 213 69.0
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 1.5e-85 320.5 255 60.8
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 2.0e-85 320.1 247 62.8
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 2.6e-85 319.7 247 63.2
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 2.6e-85 319.7 244 63.5
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 4.4e-85 318.9 230 66.5
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 4.4e-85 318.9 234 65.4
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 1.3e-84 317.4 257 61.9
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 6.3e-84 315.1 213 69.5
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 6.3e-84 315.1 226 66.4
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 1.4e-83 313.9 222 67.6
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 1.4e-83 313.9 220 66.8
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 4.1e-83 312.4 218 68.3
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 6.9e-83 311.6 247 61.9
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 4.5e-82 308.9 340 49.7
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 2.9e-81 306.2 274 56.2
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 2.9e-81 306.2 244 62.7
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 3.8e-81 305.8 221 65.6
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 6.5e-81 305.1 268 59.0
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 6.5e-81 305.1 204 67.6
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 1.1e-80 304.3 181 72.4
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 2.5e-80 303.1 216 64.8
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 9.4e-80 301.2 224 66.1
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 9.7e-77 291.2 213 65.7
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 7.7e-74 281.6 275 54.5
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 2.9e-73 279.6 387 42.1
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 4.8e-68 262.3 203 63.5
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 8.2e-68 261.5 206 62.1
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 4.5e-66 255.8 178 66.9
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 2.9e-65 253.1 216 60.2
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 8.5e-65 251.5 243 52.3
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 1.5e-64 250.8 300 48.3
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 4.2e-64 249.2 246 52.8
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 5.5e-64 248.8 265 49.8
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 8.0e-63 245.0 229 55.9
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 4.4e-61 239.2 126 78.6
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 8.6e-57 224.9 254 48.4
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 9.5e-56 221.5 165 60.6
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 2.1e-55 220.3 258 48.4
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 6.1e-55 218.8 123 75.6
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 2.6e-53 213.4 218 52.3
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 5.7e-53 212.2 123 74.8
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 2.8e-52 209.9 224 47.8
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 1.8e-51 207.2 130 73.1
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 6.6e-49 198.7 174 56.9
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 2.9e-44 183.3 130 67.7
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 2.4e-43 180.3 126 57.9
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 5.0e-41 172.6 170 54.7
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 1.5e-40 171.0 172 51.2
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 2.6e-37 160.2 211 41.2
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.9e-32 144.1 99 67.7
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 2.8e-31 140.2 87 72.4
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 7.6e-21 105.5 133 45.1
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 8.7e-09 65.5 32 84.4
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 1.5e-08 64.7 127 39.4
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 5.6e-08 62.8 122 38.5


User provided reference genes

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