Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 2.6e-220 768.5 400 100.0
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 1.0e-163 580.5 406 79.3
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 5.0e-163 578.2 401 81.3
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 1.1e-162 577.0 402 81.1
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 2.5e-162 575.9 402 81.1
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 6.1e-161 571.2 405 80.0
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 3.6e-145 518.8 405 72.3
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 8.0e-145 517.7 406 72.2
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 2.3e-144 516.2 413 72.2
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 5.7e-143 511.5 403 73.4
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 6.5e-139 498.0 406 69.0
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 5.5e-138 495.0 408 70.1
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 8.0e-137 491.1 395 69.6
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 4.4e-119 432.2 394 60.7
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 3.2e-109 399.4 405 56.5
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 1.1e-106 391.0 403 54.8
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.5e-106 390.6 398 54.3
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 5.6e-106 388.7 416 55.0
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.6e-105 387.1 271 73.8
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 1.6e-105 387.1 406 53.7
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 6.2e-105 385.2 412 54.1
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 1.1e-104 384.4 411 55.2
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 2.3e-104 383.3 407 54.1
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 4.0e-104 382.5 402 53.5
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 5.2e-104 382.1 415 54.7
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 5.2e-104 382.1 416 52.9
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 5.2e-104 382.1 411 53.0
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 6.8e-104 381.7 416 52.9
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 1.2e-103 380.9 422 52.6
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 1.5e-103 380.6 403 54.6
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 1.5e-103 380.6 420 54.3
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 5.8e-103 378.6 395 54.4
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 9.9e-103 377.9 412 54.9
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 9.9e-103 377.9 409 51.6
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.7e-102 375.9 416 52.4
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.7e-102 375.9 416 52.4
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.7e-102 375.9 416 52.4
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.7e-102 375.9 416 52.4
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 3.7e-102 375.9 393 53.4
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 3.7e-102 375.9 418 54.1
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 4.9e-102 375.6 396 52.5
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 4.9e-102 375.6 404 52.5
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 6.4e-102 375.2 397 53.1
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 8.4e-102 374.8 396 53.5
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 8.4e-102 374.8 391 53.2
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 1.1e-101 374.4 410 52.2
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 3.2e-101 372.9 414 51.2
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 2.1e-100 370.2 402 52.7
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 4.6e-100 369.0 403 54.1
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 7.8e-100 368.2 411 52.6
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 1.7e-99 367.1 394 52.0
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 2.3e-99 366.7 416 53.1
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 2.3e-99 366.7 409 50.6
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 3.0e-99 366.3 402 51.7
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 3.0e-99 366.3 404 52.5
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 8.6e-99 364.8 408 52.0
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 1.9e-98 363.6 418 51.7
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 2.5e-98 363.2 411 51.3
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 3.3e-98 362.8 414 52.7
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 3.3e-98 362.8 397 52.1
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 3.3e-98 362.8 393 53.4
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 4.3e-98 362.5 428 50.2
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 4.3e-98 362.5 401 50.4
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 5.6e-98 362.1 402 51.7
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 7.3e-98 361.7 406 50.7
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 9.6e-98 361.3 420 50.5
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 1.6e-97 360.5 399 51.4
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 1.6e-97 360.5 391 52.2
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 1.6e-97 360.5 393 52.2
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 2.1e-97 360.1 393 52.2
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 2.1e-97 360.1 391 52.4
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 3.6e-97 359.4 404 51.5
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 6.2e-97 358.6 406 53.2
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 6.2e-97 358.6 406 50.0
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 1.4e-96 357.5 389 52.2
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 2.4e-96 356.7 385 51.2
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 2.4e-96 356.7 399 51.6
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 2.4e-96 356.7 393 51.4
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 5.2e-96 355.5 405 51.4
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 6.8e-96 355.1 408 52.5
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 8.9e-96 354.8 394 52.3
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.0e-95 353.6 405 52.3
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.6e-95 353.2 406 52.7
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 3.4e-95 352.8 404 52.2
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 2.2e-94 350.1 398 51.8
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 4.9e-94 349.0 462 49.6
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 1.1e-93 347.8 393 50.4
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 3.2e-93 346.3 406 51.0
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 4.2e-93 345.9 406 51.0
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 7.1e-93 345.1 381 51.7
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 1.2e-92 344.4 405 51.1
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 4.6e-92 342.4 415 49.4
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 1.4e-88 330.9 460 45.9
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 1.2e-87 327.8 397 48.6
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 9.9e-87 324.7 423 45.2
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 6.4e-86 322.0 396 48.0
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 1.4e-85 320.9 414 46.1
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 1.2e-84 317.8 404 48.8
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 1.6e-84 317.4 407 46.9
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 7.9e-84 315.1 417 46.3
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 4.3e-82 309.3 385 48.6
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 4.5e-79 299.3 327 52.9
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 5.5e-77 292.4 405 45.9
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 5.5e-77 292.4 414 43.0
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 1.2e-76 291.2 465 39.8
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 1.6e-76 290.8 468 41.7
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 4.8e-73 279.3 323 49.8
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 1.0e-70 271.6 353 47.6
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 7.1e-69 265.4 310 49.4
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 6.7e-67 258.8 425 38.6
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 1.4e-64 251.1 410 38.5
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 2.7e-60 236.9 368 42.1
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 1.3e-59 234.6 413 39.5
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 2.3e-59 233.8 246 54.5
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 3.9e-59 233.0 410 39.3
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 4.3e-58 229.6 455 36.3
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 7.4e-58 228.8 414 40.6
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 2.2e-57 227.3 445 35.7
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 2.4e-56 223.8 399 37.8
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 8.5e-54 215.3 361 40.2
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 1.1e-50 204.9 214 52.8
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 2.5e-45 187.2 173 56.1
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 3.0e-43 180.3 203 44.3
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 1.1e-42 178.3 293 42.7
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 7.0e-40 169.1 192 50.0
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 5.7e-34 149.4 162 51.9
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 2.7e-31 140.6 169 47.9
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.3e-30 138.3 180 44.4
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 2.2e-30 137.5 189 43.9
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 7.2e-29 132.5 256 36.3
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 4.4e-26 123.2 116 55.2
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 4.2e-21 106.7 179 43.6
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 1.4e-19 101.7 192 41.1
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 3.0e-19 100.5 87 55.2
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.4e-16 90.9 55 83.6
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 6.6e-14 82.8 99 49.5
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 1.1e-13 82.0 108 46.3
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 1.1e-13 82.0 147 36.1
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 1.2e-12 78.6 97 48.5
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 3.6e-12 77.0 53 69.8
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 3.6e-12 77.0 53 69.8
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 1.4e-11 75.1 400 22.2
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 3.9e-06 57.0 77 37.7
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 6.6e-06 56.2 122 37.7


User provided reference genes

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