Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20106 Brassica carinata HOM05D001579 ORTHO05D003470 4.3e-29 130.6 62 100.0
BcaB06g27782 Brassica carinata HOM05D001579 ORTHO05D003470 6.6e-14 80.1 73 54.8
BcaC02g08772 Brassica carinata HOM05D001579 ORTHO05D003470 5.6e-13 77.0 73 54.8
A04p16340 Brassica napus HOM05D001579 ORTHO05D003470 5.6e-13 77.0 73 56.2
C04p50830 Brassica napus HOM05D001579 ORTHO05D003470 5.6e-13 77.0 73 54.8
BolC4t26677H Brassica oleracea HOM05D001579 ORTHO05D003470 5.6e-13 77.0 73 54.8
BraA04t17272Z Brassica rapa HOM05D001579 ORTHO05D003470 5.6e-13 77.0 73 54.8
BcaB03g12963 Brassica carinata HOM05D001579 ORTHO05D003470 4.7e-12 73.9 73 54.8
BcaB08g35003 Brassica carinata HOM05D001579 ORTHO05D003470 5.2e-11 70.5 73 50.7
BcaC01g00633 Brassica carinata HOM05D001579 ORTHO05D003470 8.9e-11 69.7 67 53.7
BcaC07g41119 Brassica carinata HOM05D001579 ORTHO05D003470 4.4e-10 67.4 73 49.3
C08p41200 Brassica napus HOM05D001579 ORTHO05D003470 4.4e-10 67.4 73 49.3
BolC8t51687H Brassica oleracea HOM05D001579 ORTHO05D003470 4.4e-10 67.4 73 49.3
A09p57990 Brassica napus HOM05D001579 ORTHO05D003470 5.8e-10 67.0 73 49.3
BraA09t41189Z Brassica rapa HOM05D001579 ORTHO05D003470 5.8e-10 67.0 73 49.3
THA.LOC104824827 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 7.5e-10 66.6 74 50.0
Carub.0004s0076 Capsella rubella HOM05D001579 ORTHO05D003470 9.8e-10 66.2 71 47.9
AT4G39280 Arabidopsis thaliana HOM05D001579 ORTHO05D003470 3.7e-09 64.3 71 49.3
Aa31LG7G14810 Aethionema arabicum HOM05D001579 ORTHO05D003470 4.9e-09 63.9 71 46.5
A10p12820 Brassica napus HOM05D001579 ORTHO05D003470 6.4e-09 63.5 71 47.9
BraA10t43375Z Brassica rapa HOM05D001579 ORTHO05D003470 6.4e-09 63.5 71 47.9
AL7G11270 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 1.4e-08 62.4 71 46.5
C09p46380 Brassica napus HOM05D001579 ORTHO05D003470 1.4e-08 62.4 71 49.3
AL4G10950 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 3.2e-08 61.2 71 46.5
AL7G31990 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 3.2e-08 61.2 71 42.3
BcaB01g00883 Brassica carinata HOM05D001579 ORTHO05D003470 4.1e-08 60.8 71 45.1
arahy.Tifrunner.gnm1.ann1.D5Q7RU Arachis hypogaea HOM05D001579 ORTHO05D003470 7.1e-08 60.1 75 44.0
vmacro11112 Vaccinium macrocarpon HOM05D001579 ORTHO05D003470 9.2e-08 59.7 71 43.7
Rhsim11G0177200 Rhododendron simsii HOM05D001579 ORTHO05D003470 1.2e-07 59.3 71 47.9
Carub.0005s1088 Capsella rubella HOM05D001579 ORTHO05D003470 1.6e-07 58.9 69 42.0
HanXRQChr14g0437911 Helianthus annuus HOM05D001579 ORTHO05D003470 1.6e-07 58.9 75 45.3
Lj7A253G28 Lonicera japonica HOM05D001579 ORTHO05D003470 1.6e-07 58.9 71 47.9
Carub.0007s0120 Capsella rubella HOM05D001579 ORTHO05D003470 2.1e-07 58.5 71 45.1
Actinidia27894 Actinidia chinensis HOM05D001579 ORTHO05D003470 2.7e-07 58.2 71 42.3
CARHR247410 Cardamine hirsuta HOM05D001579 ORTHO05D003470 2.7e-07 58.2 71 45.1
THA.LOC104804143 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 2.7e-07 58.2 71 42.3
arahy.Tifrunner.gnm1.ann1.IB6GCN Arachis hypogaea HOM05D001579 ORTHO05D003470 3.5e-07 57.8 75 42.7
Lj7A248G13 Lonicera japonica HOM05D001579 ORTHO05D003470 3.5e-07 57.8 71 46.5
Lalb_Chr03g0025691 Lupinus albus HOM05D001579 ORTHO05D003470 6.0e-07 57.0 41 61.0
Lj3g0013700 Lotus japonicus HOM05D001579 ORTHO05D003470 7.8e-07 56.6 51 58.8
Manes.17G101200 Manihot esculenta HOM05D001579 ORTHO05D003470 7.8e-07 56.6 71 43.7
Medtr4g070040 Medicago truncatula HOM05D001579 ORTHO05D003470 7.8e-07 56.6 51 58.8
Lj2C359T3 Lonicera japonica HOM05D001579 ORTHO05D003470 1.0e-06 56.2 71 46.5
Actinidia00524 Actinidia chinensis HOM05D001579 ORTHO05D003470 1.3e-06 55.8 71 42.3
Sabra04G0102800 Salix brachista HOM05D001579 ORTHO05D003470 1.7e-06 55.5 69 42.0
CSS0013099 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 2.3e-06 55.1 71 40.8
Hma1.2p1_1375F.1_g279070 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 2.3e-06 55.1 39 59.0
Potri.009G116100 Populus trichocarpa HOM05D001579 ORTHO05D003470 2.3e-06 55.1 51 58.8
Thecc.02G085100 Theobroma cacao HOM05D001579 ORTHO05D003470 2.3e-06 55.1 71 40.8
CSS0031219 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 3.0e-06 54.7 71 40.8
Duzib132G0542 Durio zibethinus HOM05D001579 ORTHO05D003470 3.0e-06 54.7 71 40.8
Cpa.g.sc62.152 Carica papaya HOM05D001579 ORTHO05D003470 3.9e-06 54.3 71 40.8
DCAR_006199 Daucus carota HOM05D001579 ORTHO05D003470 3.9e-06 54.3 44 56.8
Gohir.D04G167200 Gossypium hirsutum HOM05D001579 ORTHO05D003470 3.9e-06 54.3 71 40.8
CSS0049673 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 5.1e-06 53.9 44 59.1
Nitab4.5_0004172g0030 Nicotiana tabacum HOM05D001579 ORTHO05D003470 5.1e-06 53.9 75 45.3
TWI79G0010 Tripterygium wilfordii HOM05D001579 ORTHO05D003470 5.1e-06 53.9 71 42.3
CDE06G0853 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 6.6e-06 53.5 71 46.5
Glyma.11G117800 Glycine max HOM05D001579 ORTHO05D003470 6.6e-06 53.5 51 58.8
TPR.G19411 Trifolium pratense HOM05D001579 ORTHO05D003470 6.6e-06 53.5 51 58.8
TAR628G1064 Trochodendron aralioides HOM05D001579 ORTHO05D003470 6.6e-06 53.5 44 63.6
EL10Ac3g05071 Beta vulgaris HOM05D001579 ORTHO05D003470 8.6e-06 53.1 75 44.0
Ca_01102_v3 Cicer arietinum L. HOM05D001579 ORTHO05D003470 8.6e-06 53.1 51 56.9
Ciclev10028310m.g Citrus clementina HOM05D001579 ORTHO05D003470 8.6e-06 53.1 71 39.4
Eucgr.D00245 Eucalyptus grandis HOM05D001579 ORTHO05D003470 8.6e-06 53.1 51 58.8
Gohir.A04G130900 Gossypium hirsutum HOM05D001579 ORTHO05D003470 8.6e-06 53.1 71 40.8
Psat7g141360 Pisum sativum HOM05D001579 ORTHO05D003470 8.6e-06 53.1 51 54.9


User provided reference genes

Program Settings