Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20090 Brassica carinata HOM05D000529 ORTHO05D000472 1.4e-62 242.7 116 100.0
A09p09690 Brassica napus HOM05D000529 ORTHO05D000472 8.0e-29 130.6 69 89.9
Sp2g29770 Schrenkiella parvula HOM05D000529 ORTHO05D000472 1.0e-28 130.2 69 89.9
C09p11440 Brassica napus HOM05D000529 ORTHO05D000472 3.3e-27 125.2 69 87.0
Thhalv10005517m.g Eutrema salsugineum HOM05D000529 ORTHO05D000472 3.3e-27 125.2 69 84.1
BcaB04g20092 Brassica carinata HOM05D000529 ORTHO05D000472 5.7e-27 124.4 69 85.5
C09p11470 Brassica napus HOM05D000529 ORTHO05D000472 1.3e-26 123.2 66 90.9
BolC9t54034H Brassica oleracea HOM05D000529 ORTHO05D000472 1.3e-26 123.2 66 90.9
BraA09t36616Z Brassica rapa HOM05D000529 ORTHO05D000472 2.8e-26 122.1 69 87.0
BolC2t12532H Brassica oleracea HOM05D000529 ORTHO05D000472 4.8e-26 121.3 69 81.2
C02p64700 Brassica napus HOM05D000529 ORTHO05D000472 1.2e-24 116.7 69 78.3
AL8G44510 Arabidopsis lyrata HOM05D000529 ORTHO05D000472 5.9e-24 114.4 67 79.1
Carub.0008s2760 Capsella rubella HOM05D000529 ORTHO05D000472 1.5e-22 109.8 67 77.6
BolC9t54032H Brassica oleracea HOM05D000529 ORTHO05D000472 2.5e-22 109.0 60 85.0
AT5G66890 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 6.8e-20 100.9 68 73.5
Carub.0008s2759 Capsella rubella HOM05D000529 ORTHO05D000472 7.5e-19 97.4 64 70.3
BcaC04g23170 Brassica carinata HOM05D000529 ORTHO05D000472 2.2e-18 95.9 66 69.7
C09p11430 Brassica napus HOM05D000529 ORTHO05D000472 2.2e-18 95.9 66 69.7
BcaB04g20089 Brassica carinata HOM05D000529 ORTHO05D000472 2.8e-18 95.5 66 69.7
BcaC04g23168 Brassica carinata HOM05D000529 ORTHO05D000472 2.8e-18 95.5 66 69.7
C09p11460 Brassica napus HOM05D000529 ORTHO05D000472 2.8e-18 95.5 66 69.7
BolC9t54031H Brassica oleracea HOM05D000529 ORTHO05D000472 3.7e-18 95.1 80 61.2
BraA09t36615Z Brassica rapa HOM05D000529 ORTHO05D000472 3.7e-18 95.1 80 61.2
A09p09670 Brassica napus HOM05D000529 ORTHO05D000472 8.3e-18 94.0 66 69.7
CARHR289020 Cardamine hirsuta HOM05D000529 ORTHO05D000472 1.1e-17 93.6 69 66.7
Sp2g29750 Schrenkiella parvula HOM05D000529 ORTHO05D000472 1.4e-17 93.2 66 66.7
AT5G66900 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 7.0e-17 90.9 64 68.8
A06p36590 Brassica napus HOM05D000529 ORTHO05D000472 2.0e-16 89.4 79 57.0
AL8G44500 Arabidopsis lyrata HOM05D000529 ORTHO05D000472 5.9e-16 87.8 66 66.7
Aa31LG1G15460 Aethionema arabicum HOM05D000529 ORTHO05D000472 7.7e-16 87.4 67 61.2
BraA06t26585Z Brassica rapa HOM05D000529 ORTHO05D000472 1.0e-15 87.0 65 63.1
BcaB04g20091 Brassica carinata HOM05D000529 ORTHO05D000472 1.3e-15 86.7 67 61.2
Thhalv10005443m.g Eutrema salsugineum HOM05D000529 ORTHO05D000472 6.5e-15 84.3 74 59.5
Sp2g29760 Schrenkiella parvula HOM05D000529 ORTHO05D000472 6.5e-15 84.3 71 60.6
A02p38850 Brassica napus HOM05D000529 ORTHO05D000472 8.5e-15 84.0 67 61.2
AL8G44490 Arabidopsis lyrata HOM05D000529 ORTHO05D000472 1.1e-14 83.6 67 62.7
BcaB04g20245 Brassica carinata HOM05D000529 ORTHO05D000472 1.1e-14 83.6 64 62.5
C02p64690 Brassica napus HOM05D000529 ORTHO05D000472 1.1e-14 83.6 82 52.4
BcaC03g17818 Brassica carinata HOM05D000529 ORTHO05D000472 3.2e-14 82.0 84 51.2
C02p58420 Brassica napus HOM05D000529 ORTHO05D000472 3.2e-14 82.0 84 51.2
CARHR177850 Cardamine hirsuta HOM05D000529 ORTHO05D000472 4.2e-14 81.6 65 58.5
Thhalv10020099m.g Eutrema salsugineum HOM05D000529 ORTHO05D000472 7.2e-14 80.9 66 59.1
C07p24850 Brassica napus HOM05D000529 ORTHO05D000472 1.2e-13 80.1 68 60.3
BolC2t12531H Brassica oleracea HOM05D000529 ORTHO05D000472 1.2e-13 80.1 68 55.9
CARHR289030 Cardamine hirsuta HOM05D000529 ORTHO05D000472 1.6e-13 79.7 65 56.9
BcaC06g34763 Brassica carinata HOM05D000529 ORTHO05D000472 3.6e-13 78.6 68 58.8
BolC7t43013H Brassica oleracea HOM05D000529 ORTHO05D000472 3.6e-13 78.6 68 58.8
BcaB02g09973 Brassica carinata HOM05D000529 ORTHO05D000472 4.7e-13 78.2 68 55.9
CARHR292120 Cardamine hirsuta HOM05D000529 ORTHO05D000472 4.7e-13 78.2 65 58.5
AT5G66910 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 1.0e-12 77.0 67 59.7
A07p17000 Brassica napus HOM05D000529 ORTHO05D000472 1.0e-12 77.0 68 57.4
BraA07t29427Z Brassica rapa HOM05D000529 ORTHO05D000472 1.0e-12 77.0 68 57.4
BolC2t11904H Brassica oleracea HOM05D000529 ORTHO05D000472 1.8e-12 76.3 66 57.6
Thhalv10003662m.g Eutrema salsugineum HOM05D000529 ORTHO05D000472 1.8e-12 76.3 74 55.4
BraA02t08859Z Brassica rapa HOM05D000529 ORTHO05D000472 2.3e-12 75.9 66 57.6
BcaB08g34626 Brassica carinata HOM05D000529 ORTHO05D000472 5.2e-12 74.7 66 51.5
A07p16990 Brassica napus HOM05D000529 ORTHO05D000472 6.8e-12 74.3 71 52.1
BolC2t10946H Brassica oleracea HOM05D000529 ORTHO05D000472 1.2e-11 73.6 66 53.0
BolC7t44188H Brassica oleracea HOM05D000529 ORTHO05D000472 7.5e-11 70.9 67 52.2
CARHR289650 Cardamine hirsuta HOM05D000529 ORTHO05D000472 9.8e-11 70.5 71 50.7
THA.LOC104819226 Tarenaya hassleriana HOM05D000529 ORTHO05D000472 2.2e-10 69.3 64 54.7
C07p36810 Brassica napus HOM05D000529 ORTHO05D000472 3.7e-10 68.6 66 53.0
BolC7t44194H Brassica oleracea HOM05D000529 ORTHO05D000472 6.3e-10 67.8 66 53.0
FvH4_1g15140 Fragaria vesca HOM05D000529 ORTHO05D000472 2.0e-08 62.8 65 47.7
C07p36780 Brassica napus HOM05D000529 ORTHO05D000472 2.7e-08 62.4 65 50.8
CARHR177840 Cardamine hirsuta HOM05D000529 ORTHO05D000472 1.0e-07 60.5 40 67.5
FvH4_1g15130 Fragaria vesca HOM05D000529 ORTHO05D000472 1.7e-07 59.7 62 45.2
FAN19G2633 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.7e-07 59.7 62 45.2
Lsat_1_v5_gn_9_123541 Lactuca sativa HOM05D000529 ORTHO05D000472 2.9e-07 58.9 68 42.6
ECA232G1175 Erigeron canadensis HOM05D000529 ORTHO05D000472 5.0e-07 58.2 55 49.1
HanXRQChr14g0430731 Helianthus annuus HOM05D000529 ORTHO05D000472 5.0e-07 58.2 66 48.5
RcHm_v2.0_Chr2g0104361 Rosa chinensis HOM05D000529 ORTHO05D000472 5.0e-07 58.2 65 41.5
BcaB02g09974 Brassica carinata HOM05D000529 ORTHO05D000472 6.6e-07 57.8 63 52.4
BraA06t27024Z Brassica rapa HOM05D000529 ORTHO05D000472 6.6e-07 57.8 65 47.7
FAN28G0936 Fragaria x ananassa HOM05D000529 ORTHO05D000472 8.6e-07 57.4 69 42.0
TAR381G0813 Trochodendron aralioides HOM05D000529 ORTHO05D000472 1.1e-06 57.0 61 44.3
FAN23G0006 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.5e-06 56.6 62 43.5
RcHm_v2.0_Chr2g0104151 Rosa chinensis HOM05D000529 ORTHO05D000472 1.5e-06 56.6 70 42.9
Sabra07G0031700 Salix brachista HOM05D000529 ORTHO05D000472 1.5e-06 56.6 69 40.6
Sabra07G0035000 Salix brachista HOM05D000529 ORTHO05D000472 1.5e-06 56.6 69 40.6
Cpa.g.sc6.400 Carica papaya HOM05D000529 ORTHO05D000472 2.5e-06 55.8 60 45.0
RcHm_v2.0_Chr3g0480541 Rosa chinensis HOM05D000529 ORTHO05D000472 2.5e-06 55.8 68 41.2
FAN14G2274 Fragaria x ananassa HOM05D000529 ORTHO05D000472 3.3e-06 55.5 64 37.5
HanXRQChr15g0489421 Helianthus annuus HOM05D000529 ORTHO05D000472 4.2e-06 55.1 66 45.5
GSVIVG01003572001 Vitis vinifera HOM05D000529 ORTHO05D000472 4.2e-06 55.1 65 46.2
ECA238G1832 Erigeron canadensis HOM05D000096 ORTHO05D000045 5.5e-06 54.7 66 42.4
FAN09G3823 Fragaria x ananassa HOM05D000529 ORTHO05D000472 5.5e-06 54.7 64 35.9
FAN14G2114 Fragaria x ananassa HOM05D000529 ORTHO05D000472 5.5e-06 54.7 64 37.5
HanXRQChr11g0331571 Helianthus annuus HOM05D000529 ORTHO05D000472 5.5e-06 54.7 57 43.9
Lj7A50G14 Lonicera japonica HOM05D000529 ORTHO05D000472 5.5e-06 54.7 71 42.3
Lj7C46T7 Lonicera japonica HOM05D000529 ORTHO05D000472 5.5e-06 54.7 71 42.3
CiPaw.01G024000 Carya illinoinensis HOM05D000529 ORTHO05D000472 7.2e-06 54.3 60 41.7
FAN11G3603 Fragaria x ananassa HOM05D000529 ORTHO05D000472 7.2e-06 54.3 64 42.2
FAN23G0247 Fragaria x ananassa HOM05D000529 ORTHO05D010311 7.2e-06 54.3 55 45.5
Nn4g24847 Nelumbo nucifera HOM05D000529 ORTHO05D000472 7.2e-06 54.3 61 45.9
Actinidia15273 Actinidia chinensis HOM05D000529 ORTHO05D000472 9.5e-06 53.9 58 44.8
Actinidia22597 Actinidia chinensis HOM05D000529 ORTHO05D000472 9.5e-06 53.9 58 44.8
FvH4_1g15230 Fragaria vesca HOM05D000529 ORTHO05D000472 9.5e-06 53.9 71 40.8
FvH4_6g42370 Fragaria vesca HOM05D000529 ORTHO05D000472 9.5e-06 53.9 65 38.5
FAN19G2597 Fragaria x ananassa HOM05D000529 ORTHO05D000472 9.5e-06 53.9 65 41.5
MD02G1165400 Malus domestica HOM05D000529 ORTHO05D000472 9.5e-06 53.9 64 42.2
Potri.007G039100 Populus trichocarpa HOM05D000529 ORTHO05D000472 9.5e-06 53.9 69 37.7
Prupe.7G138800 Prunus persica HOM05D000529 ORTHO05D000472 9.5e-06 53.9 69 40.6


User provided reference genes

Program Settings