Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 2.7e-86 322.0 165 100.0
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 2.2e-56 222.6 172 76.2
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 2.7e-54 215.7 172 74.4
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 7.8e-54 214.2 172 73.8
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 7.8e-54 214.2 172 73.8
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 1.0e-53 213.8 172 74.4
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 8.1e-51 204.1 176 71.0
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 8.9e-50 200.7 177 70.1
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 8.9e-50 200.7 177 70.1
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 8.9e-50 200.7 177 70.1
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 1.1e-47 193.7 173 67.6
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 1.1e-47 193.7 173 67.6
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 2.4e-47 192.6 177 68.4
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 2.4e-47 192.6 177 68.4
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 3.5e-46 188.7 177 67.8
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 4.6e-46 188.3 176 66.5
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 7.8e-46 187.6 173 65.9
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 7.8e-46 187.6 173 65.9
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 5.1e-45 184.9 173 65.3
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 8.6e-45 184.1 173 65.3
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 8.9e-42 174.1 177 62.7
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 8.4e-40 167.5 180 57.8
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 1.9e-39 166.4 178 61.2
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 1.4e-31 140.2 181 55.2
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.2e-22 110.5 187 42.8
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 2.3e-21 106.3 187 44.9
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 3.9e-21 105.5 182 46.7
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 5.1e-21 105.1 169 44.4
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 6.7e-21 104.8 177 41.8
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 6.7e-21 104.8 221 40.3
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 6.7e-21 104.8 145 46.9
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 2.5e-20 102.8 186 41.4
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.5e-20 102.8 186 41.4
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 3.3e-20 102.4 166 41.6
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 5.6e-20 101.7 208 38.9
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 5.6e-20 101.7 196 41.8
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 9.6e-20 100.9 172 41.9
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 9.6e-20 100.9 178 42.7
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 1.3e-19 100.5 168 44.0
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 2.1e-19 99.8 142 48.6
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.8e-19 99.4 191 38.7
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 2.8e-19 99.4 164 45.1
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 4.8e-19 98.6 213 39.9
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 4.8e-19 98.6 162 44.4
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 6.2e-19 98.2 158 44.3
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 1.4e-18 97.1 191 42.9
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 1.8e-18 96.7 155 44.5
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.8e-18 96.7 177 42.4
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 4.0e-18 95.5 167 44.3
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 6.9e-18 94.7 173 41.0
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 1.2e-17 94.0 150 43.3
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 2.0e-17 93.2 143 42.7
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 2.0e-17 93.2 180 41.1
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.6e-17 92.8 143 46.9
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.4e-17 92.4 223 38.6
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 3.4e-17 92.4 177 41.8
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 4.5e-17 92.0 181 38.7
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 4.5e-17 92.0 224 40.6
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 4.5e-17 92.0 117 48.7
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 5.8e-17 91.7 164 40.9
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 5.8e-17 91.7 193 40.9
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 7.6e-17 91.3 223 40.8
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.3e-16 90.5 149 44.3
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.7e-16 90.1 143 47.6
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 2.9e-16 89.4 229 35.4
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 2.9e-16 89.4 211 39.3
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 3.8e-16 89.0 152 43.4
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 3.8e-16 89.0 151 45.7
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 4.9e-16 88.6 191 37.2
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 8.4e-16 87.8 139 45.3
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.1e-15 87.4 190 41.1
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 1.1e-15 87.4 140 44.3
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 1.1e-15 87.4 215 36.7
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 1.4e-15 87.0 125 48.0
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 1.9e-15 86.7 176 42.6
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 1.9e-15 86.7 134 42.5
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 2.4e-15 86.3 164 40.9
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 3.2e-15 85.9 142 45.8
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 3.2e-15 85.9 185 38.4
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 3.2e-15 85.9 185 38.4
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 3.2e-15 85.9 142 43.7
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 3.2e-15 85.9 141 44.0
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 4.2e-15 85.5 170 40.0
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 5.5e-15 85.1 147 43.5
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 5.5e-15 85.1 203 36.0
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 5.5e-15 85.1 213 36.6
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 7.1e-15 84.7 116 44.0
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 7.1e-15 84.7 183 36.6
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 9.3e-15 84.3 127 45.7
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.2e-14 84.0 175 38.3
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 1.2e-14 84.0 154 42.2
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 1.6e-14 83.6 143 44.1
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 1.6e-14 83.6 118 46.6
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 1.6e-14 83.6 135 42.2
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 1.6e-14 83.6 169 40.2
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 2.1e-14 83.2 180 35.6
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 2.7e-14 82.8 158 43.0
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 2.7e-14 82.8 144 47.2
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 2.7e-14 82.8 169 37.9
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 4.6e-14 82.0 189 38.6
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 4.6e-14 82.0 159 41.5
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 6.0e-14 81.6 153 43.1
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 6.0e-14 81.6 120 41.7
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 6.0e-14 81.6 97 47.4
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 7.9e-14 81.3 153 43.1
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 7.9e-14 81.3 172 41.9
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 7.9e-14 81.3 168 36.9
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 7.9e-14 81.3 101 49.5
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.0e-13 80.9 111 47.7
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.8e-13 80.1 138 44.2
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 1.8e-13 80.1 160 39.4
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 3.0e-13 79.3 156 38.5
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 3.9e-13 79.0 156 39.7
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 6.7e-13 78.2 78 57.7
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 6.7e-13 78.2 223 33.6
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 8.7e-13 77.8 157 42.7
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 8.7e-13 77.8 153 37.9
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 1.1e-12 77.4 207 33.3
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 1.5e-12 77.0 134 44.8
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 1.9e-12 76.6 220 33.6
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 4.3e-12 75.5 101 46.5
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 4.3e-12 75.5 222 32.9
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 4.3e-12 75.5 220 35.0
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 5.6e-12 75.1 212 32.1
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 7.4e-12 74.7 103 45.6
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 7.4e-12 74.7 92 46.7
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 7.4e-12 74.7 106 41.5
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 9.6e-12 74.3 238 32.4
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 9.6e-12 74.3 205 33.7
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 1.3e-11 73.9 211 38.4
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 1.6e-11 73.6 115 43.5
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 2.1e-11 73.2 122 41.8
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 2.8e-11 72.8 220 33.6
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 2.8e-11 72.8 201 33.3
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 2.8e-11 72.8 176 35.2
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 3.7e-11 72.4 65 63.1
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 3.7e-11 72.4 156 35.3
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 4.8e-11 72.0 92 46.7
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 4.8e-11 72.0 130 39.2
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 1.4e-10 70.5 88 47.7
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 1.4e-10 70.5 131 40.5
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 1.4e-10 70.5 137 39.4
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 1.8e-10 70.1 126 42.1
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 3.1e-10 69.3 193 34.2
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 4.0e-10 68.9 165 38.2
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 6.9e-10 68.2 126 42.1
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 9.0e-10 67.8 135 38.5
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 1.2e-09 67.4 212 32.1
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 2.0e-09 66.6 165 35.8
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 1.7e-08 63.5 161 37.3
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 1.7e-08 63.5 45 66.7
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.7e-08 63.5 196 33.2
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.7e-08 63.5 196 33.2
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.2e-08 63.2 45 71.1
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 4.9e-08 62.0 51 56.9
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.9e-07 60.1 145 34.5
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 4.2e-07 58.9 226 28.8
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 5.5e-07 58.5 162 34.6
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 7.1e-07 58.2 53 54.7
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 9.3e-07 57.8 44 61.4
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 2.7e-06 56.2 60 55.0
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 3.5e-06 55.8 45 60.0
HPP92_018370 Vanilla planifolia HOM05D007665 ORTHO05D008293 4.6e-06 55.5 52 55.8
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 4.6e-06 55.5 68 44.1
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 6.0e-06 55.1 146 37.0


User provided reference genes

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