Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 1.2e-33 146.0 73 100.0
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 3.4e-25 117.9 72 81.9
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 8.3e-24 113.2 72 77.8
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 8.3e-24 113.2 72 77.8
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 8.3e-24 113.2 72 77.8
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 2.4e-23 111.7 72 76.4
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 2.4e-23 111.7 72 76.4
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 9.1e-23 109.8 72 76.4
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 1.6e-22 109.0 72 75.0
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 2.7e-22 108.2 72 76.4
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 5.9e-22 107.1 72 73.6
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 6.6e-21 103.6 72 72.2
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 8.6e-21 103.2 64 78.1
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 8.9e-18 93.2 71 60.6
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 1.2e-17 92.8 72 62.5
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 4.9e-16 87.4 68 60.3
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 8.3e-16 86.7 67 58.2
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 1.1e-15 86.3 70 55.7
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 1.4e-15 85.9 67 58.2
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 5.4e-15 84.0 67 56.7
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 7.0e-15 83.6 67 56.7
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 7.0e-15 83.6 69 56.5
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 7.0e-15 83.6 67 58.2
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 7.0e-15 83.6 67 56.7
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 1.6e-14 82.4 67 55.2
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 1.6e-14 82.4 69 50.7
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 2.0e-14 82.0 67 56.7
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 2.0e-14 82.0 69 53.6
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 4.6e-14 80.9 67 56.7
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 5.9e-14 80.5 69 49.3
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 5.9e-14 80.5 67 55.2
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 7.8e-14 80.1 69 50.7
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 1.0e-13 79.7 69 56.5
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 1.0e-13 79.7 69 58.0
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 1.0e-13 79.7 67 52.2
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.3e-13 79.3 67 53.7
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 1.7e-13 79.0 69 56.5
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 1.7e-13 79.0 67 56.7
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 1.7e-13 79.0 69 53.6
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 1.7e-13 79.0 69 56.5
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 2.3e-13 78.6 67 50.7
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 2.9e-13 78.2 69 52.2
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 2.9e-13 78.2 69 52.2
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 3.9e-13 77.8 69 52.2
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 3.9e-13 77.8 69 52.2
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 3.9e-13 77.8 67 55.2
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 5.0e-13 77.4 67 52.2
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 5.0e-13 77.4 67 52.2
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 5.0e-13 77.4 67 52.2
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 6.6e-13 77.0 67 56.7
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 8.6e-13 76.6 67 52.2
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 8.6e-13 76.6 69 50.7
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 8.6e-13 76.6 67 52.2
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 8.6e-13 76.6 69 50.7
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 1.1e-12 76.3 67 52.2
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 1.5e-12 75.9 69 53.6
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 1.5e-12 75.9 67 55.2
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.5e-12 75.9 67 55.2
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 1.5e-12 75.9 67 55.2
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 1.9e-12 75.5 67 52.2
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.9e-12 75.5 67 55.2
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.9e-12 75.5 67 55.2
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 2.5e-12 75.1 69 52.2
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 2.5e-12 75.1 67 53.7
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 4.3e-12 74.3 47 72.3
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 4.3e-12 74.3 68 54.4
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 5.6e-12 73.9 67 49.3
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 7.3e-12 73.6 67 52.2
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 7.3e-12 73.6 69 52.2
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 7.3e-12 73.6 67 53.7
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 9.5e-12 73.2 67 50.7
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 1.2e-11 72.8 67 50.7
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 1.2e-11 72.8 69 47.8
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 2.1e-11 72.0 67 53.7
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 2.1e-11 72.0 67 52.2
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 3.6e-11 71.2 67 47.8
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 4.7e-11 70.9 68 48.5
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 4.7e-11 70.9 67 49.3
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 4.7e-11 70.9 69 50.7
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 8.0e-11 70.1 68 48.5
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 8.0e-11 70.1 67 50.7
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 1.0e-10 69.7 69 46.4
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 1.4e-10 69.3 67 49.3
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 1.8e-10 68.9 67 46.3
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 1.8e-10 68.9 68 47.1
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 1.8e-10 68.9 69 49.3
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 1.8e-10 68.9 66 50.0
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 1.8e-10 68.9 66 50.0
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 2.3e-10 68.6 68 47.1
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 4.0e-10 67.8 66 48.5
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 8.9e-10 66.6 69 44.9
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 1.5e-09 65.9 68 45.6
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 2.0e-09 65.5 68 45.6
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 4.4e-09 64.3 69 46.4
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 7.5e-09 63.5 66 43.9
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 9.8e-09 63.2 68 38.2
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 9.8e-09 63.2 69 47.8
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 1.3e-08 62.8 64 48.4
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 1.3e-08 62.8 64 48.4
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 1.1e-07 59.7 64 43.8
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 1.4e-07 59.3 64 43.8
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 1.4e-07 59.3 64 43.8
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 1.4e-07 59.3 64 42.2
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.4e-07 58.5 69 44.9
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 2.4e-07 58.5 64 42.2
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 7.0e-07 57.0 64 42.2
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 9.2e-07 56.6 34 76.5
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 1.6e-06 55.8 59 45.8
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 3.5e-06 54.7 64 42.2


User provided reference genes

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