Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19984 Brassica carinata HOM05D005900 ORTHO05D007306 4.5e-82 308.1 189 100.0
Sp2g27740 Schrenkiella parvula HOM05D005900 ORTHO05D007306 3.7e-60 235.3 214 65.0
BcaB07g29751 Brassica carinata HOM05D005900 ORTHO05D007306 1.2e-55 220.3 209 62.7
C03p61480 Brassica napus HOM05D005900 ORTHO05D007306 1.6e-55 219.9 157 75.8
Thhalv10004934m.g Eutrema salsugineum HOM05D005900 ORTHO05D007306 2.6e-53 212.6 150 76.0
BcaC03g18270 Brassica carinata HOM05D005900 ORTHO05D007306 1.7e-52 209.9 205 62.4
A02p43400 Brassica napus HOM05D005900 ORTHO05D007306 6.4e-52 208.0 205 62.0
C02p63500 Brassica napus HOM05D005900 ORTHO05D007306 1.4e-51 206.8 205 61.5
BraA02t09265Z Brassica rapa HOM05D005900 ORTHO05D007306 1.4e-51 206.8 205 61.5
BolC2t12415H Brassica oleracea HOM05D005900 ORTHO05D007306 2.4e-51 206.1 206 62.6
BolC6t39862H Brassica oleracea HOM05D005900 ORTHO05D007306 3.9e-49 198.7 147 73.5
BcaC08g46818 Brassica carinata HOM05D005900 ORTHO05D007306 5.1e-49 198.4 147 73.5
Aa31LG1G17260 Aethionema arabicum HOM05D005900 ORTHO05D007306 2.6e-45 186.0 156 64.1
THA.LOC104799437 Tarenaya hassleriana HOM05D005900 ORTHO05D007306 4.3e-40 168.7 156 59.0
AL8G42100 Arabidopsis lyrata HOM05D005900 ORTHO05D007306 1.2e-34 150.6 169 52.1
AT5G64680 Arabidopsis thaliana HOM05D005900 ORTHO05D007306 4.6e-34 148.7 169 52.7
Carub.0008s2548 Capsella rubella HOM05D005900 ORTHO05D007306 1.7e-33 146.7 157 52.9
BcaC01g02700 Brassica carinata HOM05D005900 ORTHO05D007306 2.9e-28 129.4 157 52.2
CARHR278660 Cardamine hirsuta HOM05D005900 ORTHO05D007306 7.9e-26 121.3 152 48.0
Cpa.g.sc36.199 Carica papaya HOM05D005900 ORTHO05D007306 7.9e-26 121.3 159 47.2
GSVIVG01001102001 Vitis vinifera HOM05D005900 ORTHO05D007306 4.8e-23 112.1 152 46.1
DCAR_030841 Daucus carota HOM05D005900 ORTHO05D007306 2.4e-22 109.8 147 43.5
COL.COLO4_27171 Corchorus olitorius HOM05D005900 ORTHO05D007306 4.0e-22 109.0 146 47.3
Solyc01g008760.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 1.2e-21 107.5 161 41.6
TAR371G1211 Trochodendron aralioides HOM05D005900 ORTHO05D007306 1.2e-21 107.5 109 50.5
Atru.chr12.1436 Acer truncatum HOM05D005900 ORTHO05D007306 2.0e-21 106.7 147 46.3
Sabra01G0047700 Salix brachista HOM05D005900 ORTHO05D007306 2.0e-21 106.7 175 40.0
RcHm_v2.0_Chr4g0428761 Rosa chinensis HOM05D005900 ORTHO05D007306 2.6e-21 106.3 175 40.0
PGSC0003DMG400008953 Solanum tuberosum HOM05D005900 ORTHO05D007306 3.4e-21 105.9 161 39.8
Gorai.002G021100 Gossypium raimondii HOM05D005900 ORTHO05D007306 4.5e-21 105.5 149 47.0
Nitab4.5_0000059g0460 Nicotiana tabacum HOM05D005900 ORTHO05D007306 5.8e-21 105.1 164 39.6
Eucgr.B02910 Eucalyptus grandis HOM05D005900 ORTHO05D007306 7.6e-21 104.8 159 42.8
Gohir.D01G018900 Gossypium hirsutum HOM05D005900 ORTHO05D007306 1.3e-20 104.0 149 47.0
Psat4g204640 Pisum sativum HOM05D005900 ORTHO05D007306 1.7e-20 103.6 156 40.4
Gohir.A01G020300 Gossypium hirsutum HOM05D005900 ORTHO05D007306 2.9e-20 102.8 149 46.3
Solyc09g009850.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 3.8e-20 102.4 158 39.2
Sopen09g004610 Solanum pennellii HOM05D005900 ORTHO05D007306 3.8e-20 102.4 161 39.8
Thecc.02G191100 Theobroma cacao HOM05D005900 ORTHO05D007306 6.4e-20 101.7 131 47.3
PSO017G3279 Papaver somniferum HOM05D005900 ORTHO05D007306 1.1e-19 100.9 146 41.1
PSO170G6181 Papaver somniferum HOM05D005900 ORTHO05D007306 1.1e-19 100.9 146 40.4
Potri.001G068500 Populus trichocarpa HOM05D005900 ORTHO05D007306 1.1e-19 100.9 175 37.7
CiPaw.03G184600 Carya illinoinensis HOM05D005900 ORTHO05D007306 1.4e-19 100.5 150 45.3
Nitab4.5_0000191g0220 Nicotiana tabacum HOM05D005900 ORTHO05D007306 1.4e-19 100.5 164 38.4
Prupe.1G213900 Prunus persica HOM05D005900 ORTHO05D007306 1.4e-19 100.5 168 42.9
TWI36G0396 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 2.5e-19 99.8 166 39.8
Sed0015511 Sechium edule HOM05D005900 ORTHO05D007306 3.2e-19 99.4 156 40.4
CANSAT80G1963 Cannabis sativa HOM05D005900 ORTHO05D007306 4.2e-19 99.0 161 41.0
FvH4_4g22530 Fragaria vesca HOM05D005900 ORTHO05D007306 4.2e-19 99.0 148 40.5
FAN07G0479 Fragaria x ananassa HOM05D005900 ORTHO05D007306 4.2e-19 99.0 148 40.5
FAN12G4206 Fragaria x ananassa HOM05D005900 ORTHO05D007306 4.2e-19 99.0 148 40.5
Oeu055297.1 Olea europaea HOM05D005900 ORTHO05D007306 4.2e-19 99.0 162 39.5
Peaxi162Scf00698g00117 Petunia axillaris HOM05D005900 ORTHO05D007306 4.2e-19 99.0 151 37.7
QL03p048972 Quercus lobata HOM05D005900 ORTHO05D007306 4.2e-19 99.0 159 39.6
CANSAT80G1771 Cannabis sativa HOM05D005900 ORTHO05D007306 9.3e-19 97.8 161 41.0
Eucgr.E01503 Eucalyptus grandis HOM05D005900 ORTHO05D007306 9.3e-19 97.8 154 41.6
CiPaw.05G100400 Carya illinoinensis HOM05D005900 ORTHO05D007306 1.2e-18 97.4 173 41.0
MBI11_g07033_MAGBIO Magnolia biondii HOM05D005900 ORTHO05D007306 2.1e-18 96.7 111 48.6
PGSC0003DMG400022718 Solanum tuberosum HOM05D005900 ORTHO05D007306 2.1e-18 96.7 161 37.3
CSS0005312 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 2.7e-18 96.3 152 39.5
Ca_23210_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 3.5e-18 95.9 154 39.6
Ciclev10005823m.g Citrus clementina HOM05D005900 ORTHO05D007306 4.6e-18 95.5 155 41.9
Dinv35828 Davidia involucrata HOM05D005900 ORTHO05D007306 6.0e-18 95.1 152 38.8
CsaV3_4G033440 Cucumis sativus L. HOM05D005900 ORTHO05D007306 7.9e-18 94.7 154 36.4
Os08g0422600 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 1.0e-17 94.4 155 37.4
Hund20854 Selenicereus undatus HOM05D005900 ORTHO05D007306 1.0e-17 94.4 152 36.8
ClCG11G017800 Citrullus lanatus HOM05D005900 ORTHO05D007306 1.3e-17 94.0 157 36.3
FAN17G1441 Fragaria x ananassa HOM05D005900 ORTHO05D007306 1.3e-17 94.0 148 39.2
Cc04_g15880 Coffea canephora HOM05D005900 ORTHO05D007306 1.8e-17 93.6 145 37.9
TAR629G1598 Trochodendron aralioides HOM05D005900 ORTHO05D007306 1.8e-17 93.6 156 38.5
Ca_13888_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 2.3e-17 93.2 162 37.7
Dinv16498 Davidia involucrata HOM05D005900 ORTHO05D007306 3.0e-17 92.8 145 41.4
Zm00001eb127900 Zea mays HOM05D005900 ORTHO05D007306 3.0e-17 92.8 153 38.6
Aqoxy4G02969 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 6.7e-17 91.7 157 35.7
Os01g0259900 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 6.7e-17 91.7 155 38.7
Lalb_Chr15g0079851 Lupinus albus HOM05D005900 ORTHO05D007306 1.1e-16 90.9 155 37.4
CDE09G0879 Ceratophyllum demersum HOM05D005900 ORTHO05D007306 1.5e-16 90.5 155 37.4
Sc06g0007790 Simmondsia chinensis HOM05D005900 ORTHO05D007306 1.5e-16 90.5 156 37.2
AUR62006518 Chenopodium quinoa HOM05D005900 ORTHO05D007306 3.3e-16 89.4 155 36.1
BolC3t18409H Brassica oleracea HOM05D005900 ORTHO05D007306 4.3e-16 89.0 54 72.2
Hma1.2p1_1494F.1_g286930 Hydrangea macrophylla HOM05D005900 ORTHO05D007306 4.3e-16 89.0 149 36.9
TWI18G0365 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 5.6e-16 88.6 167 37.7
MSTRG.22403 Avicennia marina HOM05D005900 ORTHO05D007306 7.4e-16 88.2 156 36.5
Medtr8g012410 Medicago truncatula HOM05D005900 ORTHO05D007306 7.4e-16 88.2 165 37.0
arahy.Tifrunner.gnm1.ann1.UQH0GN Arachis hypogaea HOM05D005900 ORTHO05D007306 9.6e-16 87.8 163 38.0
Migut.C01115 Erythranthe guttata HOM05D005900 ORTHO05D007306 1.6e-15 87.0 164 34.1
Migut.C00405 Erythranthe guttata HOM05D005900 ORTHO05D007306 2.8e-15 86.3 163 34.4
PGR102G3094 Punica granatum HOM05D005900 ORTHO05D007306 2.8e-15 86.3 134 38.8
AUR62025013 Chenopodium quinoa HOM05D005900 ORTHO05D007306 3.7e-15 85.9 156 35.9
Rhsim12G0016500 Rhododendron simsii HOM05D005900 ORTHO05D007306 4.8e-15 85.5 154 37.0
EL10Ac1g01696 Beta vulgaris HOM05D005900 ORTHO05D007306 6.2e-15 85.1 151 35.1
arahy.Tifrunner.gnm1.ann1.5NZU5R Arachis hypogaea HOM05D005900 ORTHO05D007306 8.2e-15 84.7 163 37.4
Lsat_1_v5_gn_2_95001 Lactuca sativa HOM05D005900 ORTHO05D007306 1.1e-14 84.3 157 36.9
MD13G1131700 Malus domestica HOM05D005900 ORTHO05D007306 1.8e-14 83.6 121 43.8
SalBow2G0170 Salvia bowleyana HOM05D005900 ORTHO05D007306 4.0e-14 82.4 158 33.5
Lj3g0021746 Lotus japonicus HOM05D005900 ORTHO05D007306 5.3e-14 82.0 162 36.4
Haze_24259 Corylus avellana HOM05D005900 ORTHO05D007306 2.6e-13 79.7 172 34.9
Cfa010215 Carpinus fangiana HOM05D005900 ORTHO05D007306 3.4e-13 79.3 143 39.9
vmacro15379 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 7.6e-13 78.2 156 35.3
MD16G1142000 Malus domestica HOM05D005900 ORTHO05D007306 1.0e-12 77.8 143 38.5
TPR.G16445 Trifolium pratense HOM05D005900 ORTHO05D007306 1.0e-12 77.8 164 34.1
Cfa011664 Carpinus fangiana HOM05D005900 ORTHO05D007306 1.3e-12 77.4 155 36.8
SGA_v2.0_scaffold154G37193 Striga asiatica HOM05D005900 ORTHO05D007306 1.3e-12 77.4 157 33.8
SGA_v2.0_scaffold28G11983 Striga asiatica HOM05D005900 ORTHO05D007306 2.2e-12 76.6 157 33.8
Oeu001539.2 Olea europaea HOM05D005900 ORTHO05D007306 3.8e-12 75.9 196 28.6
Peaxi162Scf00079g01513 Petunia axillaris HOM05D005900 ORTHO05D007306 4.9e-12 75.5 196 32.7
Ca_13890_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 1.9e-11 73.6 115 39.1
C09p09980 Brassica napus HOM05D063710 ORTHO05D042243 5.5e-11 72.0 64 75.0
BolC9t53906H Brassica oleracea HOM05D063710 ORTHO05D042243 5.5e-11 72.0 64 75.0
ECA238G4295 Erigeron canadensis HOM05D005900 ORTHO05D007306 5.5e-11 72.0 144 37.5
ATR0582G041 Amborella trichopoda HOM05D005900 ORTHO05D007306 3.5e-10 69.3 160 34.4
BraA06t26085Z Brassica rapa HOM05D009868 ORTHO05D027327 7.9e-10 68.2 40 72.5
Aqoxy83s001 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 1.0e-09 67.8 124 34.7
vmacro01013 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 1.3e-09 67.4 129 36.4
VMungo0331G1117 Vigna mungo HOM05D005900 ORTHO05D007306 2.3e-09 66.6 165 30.9
Manes.08G100300 Manihot esculenta HOM05D005900 ORTHO05D007306 3.0e-09 66.2 151 33.8
Aqoxy4G03322 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 5.1e-09 65.5 118 35.6
Glyma.13G175800 Glycine max HOM05D005900 ORTHO05D007306 3.3e-08 62.8 164 30.5
Glyma.07G200400 Glycine max HOM05D005900 ORTHO05D007306 5.7e-08 62.0 167 29.9
Cc04_g15860 Coffea canephora HOM05D005900 ORTHO05D007306 6.3e-07 58.5 79 35.4
Atru.chr12.1335 Acer truncatum HOM05D005900 ORTHO05D007306 2.4e-06 56.6 62 46.8
Aqoxy2G04193 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 9.0e-06 54.7 102 37.3
Duzib052G0736 Durio zibethinus HOM05D005900 ORTHO05D007306 9.0e-06 54.7 156 30.1


User provided reference genes

Program Settings