Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19973 Brassica carinata HOM05D003963 ORTHO05D004558 7.5e-144 513.8 259 100.0
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 9.7e-51 204.5 507 34.3
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 2.2e-50 203.4 547 32.5
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 2.8e-50 203.0 507 34.3
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 2.2e-42 176.8 564 30.3
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 3.1e-41 172.9 545 30.5
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 2.9e-39 166.4 134 66.4
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 6.5e-39 165.2 563 29.5
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 1.4e-38 164.1 547 29.6
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 1.4e-38 164.1 146 65.1
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 1.4e-36 157.5 138 61.6
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 1.4e-36 157.5 138 61.6
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 1.8e-36 157.1 132 64.4
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 1.8e-36 157.1 132 64.4
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 4.4e-35 152.5 146 59.6
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 5.7e-35 152.1 131 63.4
BcaB07g29747 Brassica carinata HOM05D003963 ORTHO05D004558 1.7e-34 150.6 529 29.3
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 2.8e-34 149.8 131 62.6
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 4.8e-34 149.1 137 62.0
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.1e-33 147.9 123 67.5
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 1.4e-33 147.5 139 62.6
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.6e-32 144.1 138 60.1
BolC9t53891H Brassica oleracea HOM05D003963 ORTHO05D004558 6.5e-31 138.7 122 66.4
BcaC04g23312 Brassica carinata HOM05D003963 ORTHO05D004558 7.2e-30 135.2 122 65.6
C09p09830 Brassica napus HOM05D003963 ORTHO05D004558 7.2e-30 135.2 122 65.6
Atru.chr10.2100 Acer truncatum HOM05D003963 ORTHO05D004558 1.4e-25 120.9 142 53.5
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 7.0e-25 118.6 124 58.9
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 9.1e-25 118.2 148 51.4
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 5.5e-22 109.0 132 51.5
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 1.6e-21 107.5 114 55.3
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 2.7e-21 106.7 151 46.4
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 4.7e-21 105.9 115 53.9
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 1.0e-20 104.8 143 48.3
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 1.0e-20 104.8 149 45.6
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 1.4e-20 104.4 126 55.6
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 8.8e-20 101.7 111 56.8
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 8.8e-20 101.7 149 45.0
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 1.2e-19 101.3 154 44.8
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 1.2e-19 101.3 152 44.7
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 1.5e-19 100.9 146 43.2
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 2.0e-19 100.5 149 41.6
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 2.6e-19 100.1 116 51.7
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 3.4e-19 99.8 137 46.0
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 2.8e-18 96.7 144 43.1
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 4.8e-18 95.9 153 41.8
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 4.8e-18 95.9 155 41.9
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 6.3e-18 95.5 152 43.4
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 6.3e-18 95.5 152 40.8
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 8.3e-18 95.1 151 43.7
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 1.4e-17 94.4 143 41.3
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 1.4e-17 94.4 146 43.2
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 1.8e-17 94.0 139 41.7
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 2.4e-17 93.6 152 40.8
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 3.1e-17 93.2 149 45.6
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 4.1e-17 92.8 149 41.6
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 4.1e-17 92.8 145 40.0
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 5.4e-17 92.4 140 43.6
BcaC03g13269 Brassica carinata HOM05D003963 ORTHO05D004558 5.4e-17 92.4 113 51.3
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 5.4e-17 92.4 113 51.3
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 5.4e-17 92.4 150 43.3
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 5.4e-17 92.4 139 42.4
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 5.4e-17 92.4 152 41.4
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 7.0e-17 92.0 151 42.4
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 9.1e-17 91.7 147 40.1
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 1.2e-16 91.3 135 42.2
SalBow5G2159 Salvia bowleyana HOM05D003963 ORTHO05D004558 1.2e-16 91.3 126 46.0
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 2.0e-16 90.5 133 43.6
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 2.7e-16 90.1 133 45.9
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 2.7e-16 90.1 151 39.7
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 3.5e-16 89.7 148 42.6
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 3.5e-16 89.7 148 42.6
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 4.5e-16 89.4 142 44.4
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 5.9e-16 89.0 150 40.7
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 5.9e-16 89.0 141 41.8
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 7.7e-16 88.6 151 41.1
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 1.3e-15 87.8 157 38.2
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 1.3e-15 87.8 136 41.9
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 1.7e-15 87.4 155 40.6
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 1.7e-15 87.4 141 41.8
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 1.7e-15 87.4 145 43.4
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 1.7e-15 87.4 150 40.7
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 2.9e-15 86.7 130 41.5
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 2.9e-15 86.7 153 42.5
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 2.9e-15 86.7 156 41.0
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 3.8e-15 86.3 153 39.9
BcaB05g21539 Brassica carinata HOM05D003963 ORTHO05D004558 5.0e-15 85.9 124 49.2
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 5.0e-15 85.9 149 43.6
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 5.0e-15 85.9 140 42.1
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 5.0e-15 85.9 133 45.1
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 6.6e-15 85.5 142 38.7
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 8.6e-15 85.1 157 36.9
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 8.6e-15 85.1 151 39.7
Actinidia00250 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.1e-14 84.7 150 38.0
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 1.1e-14 84.7 133 41.4
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 1.1e-14 84.7 135 40.0
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 1.5e-14 84.3 145 35.2
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.5e-14 84.3 143 44.1
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 2.5e-14 83.6 149 40.3
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 3.3e-14 83.2 138 44.2
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 5.5e-14 82.4 150 39.3
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 7.2e-14 82.0 152 38.2
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 1.2e-13 81.3 132 43.2
Lj5C243T4 Lonicera japonica HOM05D003963 ORTHO05D004558 1.2e-13 81.3 136 39.0
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 1.6e-13 80.9 139 42.4
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 1.6e-13 80.9 145 37.2
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 1.6e-13 80.9 140 40.7
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 2.1e-13 80.5 152 36.8
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 2.8e-13 80.1 147 41.5
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 3.6e-13 79.7 150 36.7
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 4.7e-13 79.3 151 37.7
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 4.7e-13 79.3 150 38.0
Lj9P318T69 Lonicera japonica HOM05D003963 ORTHO05D004558 6.1e-13 79.0 134 41.8
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 6.1e-13 79.0 136 42.6
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 6.1e-13 79.0 136 42.6
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 8.0e-13 78.6 151 37.7
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 1.0e-12 78.2 140 41.4
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 2.3e-12 77.0 143 43.4
Lsat_1_v5_gn_5_106681 Lactuca sativa HOM05D003963 ORTHO05D004558 3.0e-12 76.6 131 41.2
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 4.0e-12 76.3 135 42.2
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 4.0e-12 76.3 132 39.4
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 5.2e-12 75.9 142 38.7
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 8.9e-12 75.1 140 41.4
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 8.9e-12 75.1 127 39.4
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 2.0e-11 73.9 149 38.9
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 2.0e-11 73.9 139 38.8
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 2.0e-11 73.9 139 38.8
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 3.4e-11 73.2 137 38.7
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 7.5e-11 72.0 139 43.2
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 9.8e-11 71.6 147 36.7
Lalb_Chr07g0189461 Lupinus albus HOM05D003963 ORTHO05D004558 9.8e-11 71.6 148 38.5
Oeu000233.2 Olea europaea HOM05D003963 ORTHO05D004558 1.3e-10 71.2 139 41.0
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 1.3e-10 71.2 114 41.2
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 2.2e-10 70.5 147 38.1
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 2.2e-10 70.5 147 38.1
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 2.2e-10 70.5 119 38.7
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 4.9e-10 69.3 132 38.6
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 6.3e-10 68.9 125 43.2
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 8.3e-10 68.6 145 37.9
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 8.3e-10 68.6 110 42.7
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 1.8e-09 67.4 156 35.9
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 3.2e-09 66.6 127 38.6
Hma1.2p1_0217F.1_g091700 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 7.0e-09 65.5 115 44.3
HPP92_016461 Vanilla planifolia HOM05D003963 ORTHO05D004558 9.2e-09 65.1 111 39.6
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 9.2e-09 65.1 112 40.2
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 4.5e-08 62.8 139 33.1
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 5.9e-08 62.4 127 36.2
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 1.1e-06 58.2 121 32.2
HanXRQChr10g0293231 Helianthus annuus HOM05D003963 ORTHO05D004558 9.5e-06 55.1 107 35.5


User provided reference genes

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