Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 0.0e+00 1209.1 597 100.0
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 0.0e+00 1182.9 598 97.7
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 0.0e+00 1172.5 598 97.3
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 0.0e+00 1153.7 600 95.5
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 0.0e+00 1151.7 599 95.7
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 0.0e+00 1150.6 601 95.2
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 0.0e+00 1136.7 601 94.2
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 0.0e+00 1131.3 600 93.5
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 0.0e+00 1127.5 599 93.8
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 0.0e+00 1127.1 600 93.2
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 0.0e+00 1125.5 599 93.7
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 0.0e+00 1117.8 597 92.1
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 0.0e+00 1115.5 597 92.3
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 0.0e+00 1115.5 598 93.0
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 0.0e+00 1102.8 598 91.6
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 0.0e+00 1085.9 598 89.8
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 1.8e-302 1042.0 599 86.6
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.6e-298 1028.9 597 84.4
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 3.9e-297 1024.2 604 83.9
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 7.4e-296 1020.0 601 83.5
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 5.9e-293 1010.4 604 83.1
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 1.3e-292 1009.2 606 82.5
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 1.3e-292 1009.2 606 82.8
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 2.2e-292 1008.4 605 82.6
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 3.8e-292 1007.7 594 84.3
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 4.2e-291 1004.2 609 82.3
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 1.6e-287 992.3 574 84.5
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 1.5e-277 959.1 603 79.3
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 5.9e-277 957.2 601 79.4
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 3.1e-270 934.9 520 87.9
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 4.1e-270 934.5 605 78.5
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 4.4e-264 914.4 597 75.4
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 1.7e-263 912.5 603 74.1
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 3.7e-263 911.4 570 77.5
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 4.8e-263 911.0 601 74.2
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 1.4e-262 909.4 606 73.6
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 3.1e-262 908.3 570 77.4
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 4.1e-262 907.9 571 76.9
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 4.1e-262 907.9 571 76.9
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 5.3e-262 907.5 571 76.9
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 7.0e-262 907.1 891 56.3
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 7.0e-262 907.1 597 74.5
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 9.1e-262 906.7 570 77.2
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 2.0e-261 905.6 599 74.5
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 5.9e-261 904.0 572 76.7
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 1.3e-260 902.9 597 74.9
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 3.8e-260 901.4 570 75.6
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 3.8e-260 901.4 577 76.1
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 1.1e-259 899.8 569 77.0
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.5e-259 898.7 570 76.0
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 2.5e-259 898.7 593 73.5
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 3.2e-259 898.3 603 72.8
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 7.2e-259 897.1 598 73.6
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 9.4e-259 896.7 583 74.3
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 2.1e-258 895.6 570 76.7
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 3.6e-258 894.8 581 75.2
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 6.1e-258 894.0 596 73.3
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 1.4e-257 892.9 574 75.4
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 1.8e-257 892.5 567 75.8
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 2.3e-257 892.1 576 74.7
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 3.0e-257 891.7 573 74.7
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 6.8e-257 890.6 577 74.7
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 6.8e-257 890.6 603 73.0
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 1.2e-256 889.8 576 75.9
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 1.2e-256 889.8 600 72.8
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 1.5e-256 889.4 553 76.9
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 2.0e-256 889.0 588 74.0
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 5.7e-256 887.5 597 73.5
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 9.8e-256 886.7 574 75.1
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 1.3e-255 886.3 595 72.8
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 2.2e-255 885.6 570 75.3
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 3.7e-255 884.8 592 73.6
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 6.3e-255 884.0 598 71.9
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 8.3e-255 883.6 574 76.3
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 1.1e-254 883.2 592 72.6
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 1.1e-254 883.2 576 74.7
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 2.4e-254 882.1 582 73.7
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 2.4e-254 882.1 556 75.5
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 4.1e-254 881.3 597 72.2
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 5.4e-254 880.9 623 71.7
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 7.0e-254 880.6 598 71.9
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 1.2e-253 879.8 588 73.3
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.7e-253 878.6 593 73.7
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.7e-253 878.6 623 71.6
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 2.7e-253 878.6 583 71.7
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 4.5e-253 877.9 603 71.8
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 4.5e-253 877.9 599 73.0
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 5.9e-253 877.5 570 74.9
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 7.7e-253 877.1 623 71.4
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 1.0e-252 876.7 570 75.4
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 1.3e-252 876.3 600 72.5
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 2.2e-252 875.5 569 75.6
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 2.9e-252 875.2 600 72.5
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 3.8e-252 874.8 558 75.8
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 4.2e-251 871.3 596 71.8
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 5.5e-251 870.9 599 71.0
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 5.5e-251 870.9 599 72.8
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 5.5e-251 870.9 601 72.4
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 7.2e-251 870.5 597 71.7
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 9.5e-251 870.2 576 73.1
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 1.2e-250 869.8 600 71.7
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 2.8e-250 868.6 573 73.5
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 2.8e-250 868.6 585 73.7
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 6.1e-250 867.5 605 71.1
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 6.1e-250 867.5 574 72.5
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 8.0e-250 867.1 602 71.9
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 1.0e-249 866.7 570 74.4
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 1.4e-249 866.3 620 69.7
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 6.8e-249 864.0 620 69.4
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 6.8e-249 864.0 708 63.3
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 4.4e-248 861.3 598 71.2
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 4.4e-248 861.3 602 69.9
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 1.3e-247 859.8 570 74.4
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 9.2e-246 853.6 616 70.0
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 2.3e-244 849.0 602 69.9
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 5.0e-244 847.8 547 75.3
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 6.6e-244 847.4 554 74.9
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 5.6e-243 844.3 533 74.9
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 8.0e-242 840.5 602 70.1
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 1.2e-237 826.6 611 68.4
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 2.7e-229 798.9 527 74.8
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 4.6e-229 798.1 542 70.5
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 4.7e-226 788.1 587 66.4
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 5.1e-220 768.1 498 75.7
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 6.2e-218 761.1 935 47.2
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 8.1e-210 734.2 603 60.5
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 7.4e-195 684.5 570 61.2
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 6.2e-194 681.4 571 61.3
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 4.5e-192 675.2 541 64.1
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 2.2e-191 672.9 566 58.0
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 5.1e-188 661.8 401 78.6
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.5e-187 659.4 434 79.5
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 2.9e-183 646.0 468 66.2
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 1.3e-162 577.4 342 83.6
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 5.3e-153 545.4 444 69.4
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 3.5e-152 542.7 566 49.6
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 1.6e-149 533.9 423 65.2
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 1.8e-132 477.2 308 76.6
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 4.7e-117 426.0 346 58.7
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 8.3e-106 388.7 450 44.4
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 3.4e-99 366.7 522 38.7
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 1.6e-96 357.8 473 41.9
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 9.6e-86 322.0 220 74.1
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 1.8e-79 301.2 246 62.2
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 1.5e-78 298.1 176 81.2
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 3.2e-73 280.4 417 39.3
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 6.7e-71 272.7 236 58.5
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 6.2e-69 266.2 220 59.1
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 6.2e-69 266.2 220 59.1
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 4.6e-64 250.0 365 35.6
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 3.0e-63 247.3 171 67.3
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 2.5e-57 227.6 161 66.5
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 4.1e-44 183.7 228 46.9
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 2.0e-43 181.4 110 86.4
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 1.4e-31 142.1 162 51.9
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 2.3e-31 141.4 158 52.5
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 2.4e-28 131.3 72 83.3
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 5.5e-25 120.2 110 56.4
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 3.3e-17 94.4 105 53.3
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 6.8e-15 86.7 43 86.0
CDE05G0837 Ceratophyllum demersum HOM05D004337 ORTHO05D043897 1.3e-13 82.4 76 57.9
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 4.9e-13 80.5 49 71.4
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 4.9e-13 80.5 49 71.4
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 4.5e-11 73.9 48 64.6
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 1.7e-10 72.0 43 74.4
CARHR148430 Cardamine hirsuta HOM05D004337 ORTHO05D116339 6.1e-08 63.5 51 70.6


User provided reference genes

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