Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 1.8e-63 245.7 120 100.0
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 3.9e-55 218.0 120 91.7
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 3.9e-55 218.0 120 90.8
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 8.7e-55 216.9 118 89.0
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 1.9e-54 215.7 120 90.0
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 1.3e-53 213.0 120 89.2
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 1.3e-53 213.0 120 89.2
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 1.3e-53 213.0 120 89.2
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 2.6e-51 205.3 119 84.9
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 3.4e-51 204.9 118 82.2
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 5.9e-51 204.1 120 84.2
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 2.2e-50 202.2 120 81.7
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 1.4e-49 199.5 117 81.2
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 7.2e-49 197.2 122 82.0
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 7.2e-49 197.2 121 79.3
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 1.4e-47 193.0 120 80.0
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 8.8e-47 190.3 120 80.0
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 8.8e-47 190.3 120 80.0
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 1.3e-45 186.4 119 79.0
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 1.4e-39 166.4 123 73.2
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 1.5e-35 152.9 122 61.5
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 1.9e-33 146.0 120 63.3
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 7.2e-33 144.1 117 61.5
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 9.4e-33 143.7 120 60.0
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 1.1e-30 136.7 120 59.2
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 2.0e-30 136.0 121 59.5
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 2.6e-30 135.6 111 61.3
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 3.3e-30 135.2 116 61.2
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 5.7e-30 134.4 118 58.5
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 9.7e-30 133.7 120 58.3
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 9.7e-30 133.7 119 58.8
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 2.8e-29 132.1 118 61.0
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 3.7e-29 131.7 121 58.7
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 4.8e-29 131.3 120 56.7
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 6.3e-29 131.0 117 56.4
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 6.3e-29 131.0 120 57.5
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 8.2e-29 130.6 118 57.6
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 8.2e-29 130.6 120 57.5
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.1e-28 130.2 120 58.3
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.1e-28 130.2 120 58.3
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 1.4e-28 129.8 117 56.4
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 1.8e-28 129.4 118 57.6
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 1.8e-28 129.4 120 56.7
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 2.4e-28 129.0 125 57.6
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 2.4e-28 129.0 120 57.5
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 4.1e-28 128.3 113 61.1
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 4.1e-28 128.3 121 57.0
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 4.1e-28 128.3 121 57.0
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 5.3e-28 127.9 112 60.7
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 7.0e-28 127.5 121 57.0
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 9.1e-28 127.1 120 56.7
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 9.1e-28 127.1 118 57.6
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.2e-27 126.7 112 58.0
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 1.2e-27 126.7 120 56.7
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 1.6e-27 126.3 112 59.8
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 1.6e-27 126.3 118 57.6
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 2.6e-27 125.6 118 55.9
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 3.5e-27 125.2 120 54.2
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 3.5e-27 125.2 119 54.6
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 7.7e-27 124.0 116 56.9
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.0e-26 123.6 120 55.8
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 1.3e-26 123.2 117 56.4
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.3e-26 123.2 117 58.1
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 1.3e-26 123.2 116 56.0
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 2.2e-26 122.5 116 51.7
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 2.9e-26 122.1 118 55.9
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 3.8e-26 121.7 119 55.5
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 8.5e-26 120.6 126 50.8
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 1.1e-25 120.2 119 53.8
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 1.1e-25 120.2 119 52.9
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 1.1e-25 120.2 129 51.9
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 1.1e-25 120.2 118 51.7
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 1.9e-25 119.4 120 54.2
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 2.5e-25 119.0 116 53.4
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 2.5e-25 119.0 117 53.0
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 4.2e-25 118.2 112 53.6
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 5.5e-25 117.9 118 54.2
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 5.5e-25 117.9 118 54.2
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 5.5e-25 117.9 117 52.1
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 5.5e-25 117.9 122 51.6
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 7.2e-25 117.5 114 57.0
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 7.2e-25 117.5 117 52.1
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 7.2e-25 117.5 117 52.1
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 1.2e-24 116.7 118 51.7
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.2e-24 116.7 119 54.6
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 1.2e-24 116.7 122 50.8
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 1.6e-24 116.3 120 54.2
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 1.6e-24 116.3 119 54.6
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 2.1e-24 115.9 119 52.1
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 2.7e-24 115.5 112 58.0
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 3.6e-24 115.2 123 52.8
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 3.6e-24 115.2 119 52.1
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 4.7e-24 114.8 114 52.6
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 4.7e-24 114.8 116 56.0
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 8.0e-24 114.0 129 50.4
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 1.0e-23 113.6 126 52.4
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 4.0e-23 111.7 113 53.1
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 5.2e-23 111.3 125 50.4
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 8.8e-23 110.5 110 51.8
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 1.2e-22 110.2 117 53.0
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 2.0e-22 109.4 121 52.1
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 2.0e-22 109.4 124 47.6
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 4.4e-22 108.2 118 50.0
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 9.7e-22 107.1 119 51.3
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 2.2e-21 105.9 117 50.4
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 2.8e-21 105.5 124 47.6
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 2.8e-21 105.5 123 48.0
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 8.3e-21 104.0 117 53.0
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 8.3e-21 104.0 123 47.2
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 8.3e-21 104.0 114 46.5
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 3.1e-20 102.1 120 47.5
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 4.1e-20 101.7 127 48.0
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 5.3e-20 101.3 122 48.4
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 7.0e-20 100.9 124 48.4
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 2.2e-18 95.9 118 47.5
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 1.1e-17 93.6 114 51.8
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 1.5e-17 93.2 118 44.1
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 4.7e-16 88.2 113 47.8
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 3.0e-15 85.5 111 42.3
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 3.0e-15 85.5 122 41.8
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 6.8e-15 84.3 57 73.7
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 1.5e-14 83.2 145 36.6
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 5.7e-14 81.3 113 42.5
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 1.7e-13 79.7 129 36.4
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 9.1e-12 73.9 117 42.7
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 3.5e-11 72.0 82 47.6
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 1.0e-07 60.5 90 43.3
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 5.2e-07 58.2 54 57.4


User provided reference genes

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