Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 6.1e-103 377.5 189 100.0
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 6.5e-89 330.9 167 100.0
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 6.5e-89 330.9 167 100.0
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 6.8e-86 320.9 167 96.4
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 1.5e-85 319.7 167 96.4
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 3.4e-85 318.5 167 95.8
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 7.7e-82 307.4 165 92.1
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 1.8e-78 296.2 165 87.3
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 2.3e-78 295.8 166 89.8
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 2.8e-76 288.9 169 85.2
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 9.2e-75 283.9 169 83.4
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 3.5e-74 282.0 167 83.2
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 7.8e-74 280.8 166 84.9
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 2.5e-72 275.8 168 81.5
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 9.5e-72 273.9 164 81.1
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 1.4e-70 270.0 167 79.6
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 1.4e-70 270.0 167 79.6
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 1.5e-69 266.5 168 80.4
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 4.0e-62 241.9 170 71.8
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 8.6e-57 224.2 192 59.4
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 3.3e-56 222.2 186 62.9
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 3.6e-55 218.8 167 65.3
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 5.2e-54 214.9 167 67.1
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 1.2e-53 213.8 158 67.7
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 3.4e-53 212.2 168 66.1
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 4.4e-53 211.8 120 89.2
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 2.9e-52 209.1 167 65.3
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 2.4e-51 206.1 167 65.3
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 1.6e-50 203.4 187 57.2
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 2.7e-50 202.6 187 55.6
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 2.7e-50 202.6 187 57.8
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 6.0e-50 201.4 159 67.3
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 7.8e-50 201.1 167 61.1
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 7.8e-50 201.1 167 62.3
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 1.0e-49 200.7 189 58.2
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 1.3e-49 200.3 189 57.7
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.7e-49 199.9 186 57.5
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 1.7e-49 199.9 189 57.7
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 2.3e-49 199.5 186 57.5
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 2.3e-49 199.5 188 56.4
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 3.0e-49 199.1 186 57.5
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 3.0e-49 199.1 192 56.8
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 3.9e-49 198.7 170 60.6
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 3.9e-49 198.7 167 61.1
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 5.1e-49 198.4 159 63.5
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 6.6e-49 198.0 168 63.7
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 8.6e-49 197.6 189 57.7
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 1.1e-48 197.2 167 61.7
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 1.5e-48 196.8 163 63.2
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 1.5e-48 196.8 168 60.7
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 1.9e-48 196.4 163 62.6
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 2.5e-48 196.1 165 65.5
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 3.3e-48 195.7 164 64.6
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 4.3e-48 195.3 164 57.3
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 7.3e-48 194.5 164 64.6
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 2.8e-47 192.6 165 63.6
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 2.8e-47 192.6 165 61.8
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 4.7e-47 191.8 177 58.8
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 4.7e-47 191.8 164 64.0
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 6.2e-47 191.4 164 59.8
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 1.4e-46 190.3 157 59.9
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 1.8e-46 189.9 174 59.8
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 2.4e-46 189.5 165 58.8
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 2.4e-46 189.5 187 53.5
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 2.4e-46 189.5 165 58.8
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 3.1e-46 189.1 167 62.3
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 3.1e-46 189.1 167 62.3
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 3.1e-46 189.1 160 62.5
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 4.0e-46 188.7 166 57.8
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 4.0e-46 188.7 173 59.5
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 8.9e-46 187.6 164 55.5
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 2.6e-45 186.0 164 63.4
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 3.4e-45 185.7 190 54.7
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 3.4e-45 185.7 161 59.6
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 3.4e-45 185.7 171 60.2
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 9.9e-45 184.1 164 58.5
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 1.7e-44 183.3 162 63.0
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 2.2e-44 183.0 181 55.8
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 2.2e-44 183.0 177 57.1
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 2.9e-44 182.6 166 59.0
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 4.9e-44 181.8 181 55.8
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 4.9e-44 181.8 166 60.8
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 6.4e-44 181.4 169 56.8
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 1.4e-43 180.3 186 51.1
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 1.9e-43 179.9 162 55.6
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 1.9e-43 179.9 193 53.4
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 3.2e-43 179.1 164 56.7
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 5.4e-43 178.3 164 57.3
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 7.1e-43 177.9 171 56.7
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 9.2e-43 177.6 172 54.7
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 1.2e-42 177.2 184 53.3
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 1.6e-42 176.8 159 54.1
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 1.6e-42 176.8 196 49.5
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 7.8e-42 174.5 168 57.7
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 1.0e-41 174.1 159 56.0
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 1.0e-41 174.1 159 56.0
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 1.0e-41 174.1 181 53.0
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 1.3e-41 173.7 189 51.9
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 1.3e-41 173.7 186 53.8
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 1.7e-41 173.3 126 69.8
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 1.7e-41 173.3 194 51.5
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 2.3e-41 172.9 191 51.8
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 3.0e-41 172.6 192 50.0
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 8.7e-41 171.0 173 53.2
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 1.9e-40 169.9 170 55.9
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 4.3e-40 168.7 174 54.6
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 1.4e-38 163.7 195 48.7
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 1.8e-38 163.3 187 49.7
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 1.8e-38 163.3 165 52.7
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 2.9e-36 156.0 160 49.4
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 2.4e-35 152.9 184 49.5
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 2.4e-35 152.9 154 55.8
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 4.2e-35 152.1 217 42.4
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 4.2e-35 152.1 217 42.4
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 3.9e-33 145.6 181 45.9
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 6.6e-33 144.8 188 44.1
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.2e-29 134.0 162 48.8
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 1.2e-29 134.0 192 41.1
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 3.4e-29 132.5 176 41.5
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 1.7e-28 130.2 169 45.0
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 8.4e-28 127.9 116 56.9
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 8.4e-28 127.9 159 49.7
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 5.4e-27 125.2 161 50.9
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 2.8e-23 112.8 101 57.4
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 6.2e-23 111.7 138 44.9
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 3.1e-22 109.4 138 48.6
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 9.9e-21 104.4 160 41.2
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 6.9e-14 81.6 66 63.6
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 2.6e-13 79.7 126 39.7
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 1.4e-11 73.9 82 46.3
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 4.2e-11 72.4 151 37.7


User provided reference genes

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