Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19781 Brassica carinata HOM05D003027 ORTHO05D003455 2.1e-42 175.3 87 100.0
BcaC02g12870 Brassica carinata HOM05D003027 ORTHO05D003455 6.0e-29 130.6 66 100.0
C04p68700 Brassica napus HOM05D003027 ORTHO05D003455 7.8e-21 103.6 52 100.0
BolC4t28375H Brassica oleracea HOM05D003027 ORTHO05D003455 7.8e-21 103.6 52 100.0
BraA04t18587Z Brassica rapa HOM05D003027 ORTHO05D003455 1.1e-19 99.8 52 96.2
BcaC02g12863 Brassica carinata HOM05D003027 ORTHO05D003455 1.9e-19 99.0 52 92.3
A04p31300 Brassica napus HOM05D003027 ORTHO05D003455 2.5e-19 98.6 52 94.2
Sp4g23270 Schrenkiella parvula HOM05D003027 ORTHO05D003455 1.6e-18 95.9 60 83.3
BcaC02g12742 Brassica carinata HOM05D003027 ORTHO05D003455 8.1e-18 93.6 60 80.0
Thhalv10016317m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 3.1e-17 91.7 60 80.0
C04p02350 Brassica napus HOM05D003027 ORTHO05D003455 4.0e-17 91.3 60 75.0
BolC4t21881H Brassica oleracea HOM05D003027 ORTHO05D003455 4.0e-17 91.3 60 75.0
AT2G40950 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 5.2e-17 90.9 60 76.7
AL4G38920 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 1.5e-16 89.4 60 76.7
Carub.0004s2327 Capsella rubella HOM05D003027 ORTHO05D003455 4.4e-16 87.8 60 75.0
CARHR136060 Cardamine hirsuta HOM05D003027 ORTHO05D003455 1.9e-14 82.4 60 68.3
Aa31LG3G1070 Aethionema arabicum HOM05D003027 ORTHO05D003455 2.5e-11 72.0 48 75.0
THA.LOC104824380 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 1.6e-10 69.3 46 73.9
Sabra16G0035700 Salix brachista HOM05D003027 ORTHO05D003455 3.6e-10 68.2 44 70.5
Potri.016G032400 Populus trichocarpa HOM05D003027 ORTHO05D003455 8.1e-10 67.0 44 68.2
Potri.006G034500 Populus trichocarpa HOM05D003027 ORTHO05D003455 3.1e-09 65.1 44 65.9
TAR623G0586 Trochodendron aralioides HOM05D003027 ORTHO05D003455 6.9e-09 63.9 60 51.7
Aa31LG10G11460 Aethionema arabicum HOM05D003027 ORTHO05D003455 1.2e-08 63.2 45 66.7
Duzib128G0339 Durio zibethinus HOM05D003027 ORTHO05D003455 3.4e-08 61.6 51 64.7
Cpa.g.sc92.68 Carica papaya HOM05D003027 ORTHO05D003455 4.4e-08 61.2 43 67.4
Sabra06G0023000 Salix brachista HOM05D003027 ORTHO05D003455 5.8e-08 60.8 44 61.4
THA.LOC104803232 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 5.8e-08 60.8 37 78.4
Gohir.A13G001500 Gossypium hirsutum HOM05D003027 ORTHO05D003455 1.3e-07 59.7 41 70.7
Gohir.D13G000900 Gossypium hirsutum HOM05D003027 ORTHO05D003455 1.3e-07 59.7 41 70.7
Gorai.013G000800 Gossypium raimondii HOM05D003027 ORTHO05D003455 1.3e-07 59.7 41 70.7
Atru.chr1.1410 Acer truncatum HOM05D003027 ORTHO05D003455 1.7e-07 59.3 44 61.4
Ciclev10011169m.g Citrus clementina HOM05D003027 ORTHO05D003455 1.7e-07 59.3 44 56.8
QL07p012681 Quercus lobata HOM05D003027 ORTHO05D003455 1.7e-07 59.3 44 61.4
Phvul.001G119300 Phaseolus vulgaris HOM05D003027 ORTHO05D003455 2.2e-07 58.9 52 51.9
QL07p012799 Quercus lobata HOM05D003027 ORTHO05D003455 2.2e-07 58.9 44 61.4
COL.COLO4_19389 Corchorus olitorius HOM05D003027 ORTHO05D003455 2.9e-07 58.5 44 63.6
Duzib106G1517 Durio zibethinus HOM05D003027 ORTHO05D003455 2.9e-07 58.5 41 68.3
Glyma.03G123200 Glycine max HOM05D003027 ORTHO05D003455 2.9e-07 58.5 52 51.9
Manes.08G062800 Manihot esculenta HOM05D003027 ORTHO05D003455 2.9e-07 58.5 44 63.6
CiPaw.10G042900 Carya illinoinensis HOM05D003027 ORTHO05D003455 3.8e-07 58.2 60 50.0
Thecc.05G123000 Theobroma cacao HOM05D003027 ORTHO05D003455 4.9e-07 57.8 41 65.9
VMungo1383G0888 Vigna mungo HOM05D003027 ORTHO05D003455 4.9e-07 57.8 44 59.1
Lalb_Chr14g0365581 Lupinus albus HOM05D003027 ORTHO05D003455 6.4e-07 57.4 45 57.8
TWI77G0499 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 6.4e-07 57.4 39 66.7
CARHR166770 Cardamine hirsuta HOM05D003027 ORTHO05D003455 8.4e-07 57.0 52 61.5
Ca_08358_v3 Cicer arietinum L. HOM05D003027 ORTHO05D003455 1.1e-06 56.6 44 56.8
Lj1g0009474 Lotus japonicus HOM05D003027 ORTHO05D003455 1.1e-06 56.6 44 56.8
TWI53G2142 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 1.1e-06 56.6 41 63.4
BcaC02g09858 Brassica carinata HOM05D003027 ORTHO05D003455 1.9e-06 55.8 50 56.0
Cfa019972 Carpinus fangiana HOM05D003027 ORTHO05D003455 1.9e-06 55.8 60 48.3
Medtr7g088890 Medicago truncatula HOM05D003027 ORTHO05D003455 1.9e-06 55.8 44 54.5
TPR.G22687 Trifolium pratense HOM05D003027 ORTHO05D003455 1.9e-06 55.8 44 54.5
arahy.Tifrunner.gnm1.ann1.1QMW5J Arachis hypogaea HOM05D003027 ORTHO05D003455 2.4e-06 55.5 44 56.8
arahy.Tifrunner.gnm1.ann1.470EJV Arachis hypogaea HOM05D003027 ORTHO05D003455 2.4e-06 55.5 44 56.8
CiPaw.09G050600 Carya illinoinensis HOM05D003027 ORTHO05D003455 2.4e-06 55.5 44 56.8
COL.COLO4_26642 Corchorus olitorius HOM05D003027 ORTHO05D003455 2.4e-06 55.5 41 65.9
Lalb_Chr22g0357801 Lupinus albus HOM05D003027 ORTHO05D003455 2.4e-06 55.5 44 54.5
Sp5g05900 Schrenkiella parvula HOM05D003027 ORTHO05D003455 2.4e-06 55.5 62 50.0
C04p35840 Brassica napus HOM05D003027 ORTHO05D003455 4.2e-06 54.7 50 54.0
BolC4t25216H Brassica oleracea HOM05D003027 ORTHO05D003455 4.2e-06 54.7 50 54.0
AL5G38030 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 5.4e-06 54.3 49 61.2
Lalb_Chr24g0400521 Lupinus albus HOM05D003027 ORTHO05D003455 5.4e-06 54.3 69 44.9


User provided reference genes

Program Settings