Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19764 Brassica carinata HOM05D000147 ORTHO05D014960 5.1e-85 317.8 167 100.0
BraA09t35843Z Brassica rapa HOM05D000147 ORTHO05D001254 1.5e-36 156.8 191 55.0
Sp6g02380 Schrenkiella parvula HOM05D000147 ORTHO05D001254 5.7e-36 154.8 183 52.5
Thhalv10028366m.g Eutrema salsugineum HOM05D000147 ORTHO05D001254 1.7e-35 153.3 183 53.6
A02p24760 Brassica napus HOM05D000147 ORTHO05D001254 3.7e-35 152.1 163 57.1
C09p02020 Brassica napus HOM05D000147 ORTHO05D001254 6.3e-35 151.4 190 53.2
BolC9t53132H Brassica oleracea HOM05D000147 ORTHO05D001254 3.1e-34 149.1 190 52.6
A03p31040 Brassica napus HOM05D000147 ORTHO05D001254 1.2e-33 147.1 182 54.9
BraA03t12281Z Brassica rapa HOM05D000147 ORTHO05D001254 1.2e-33 147.1 182 54.9
BcaC01g06754 Brassica carinata HOM05D000147 ORTHO05D001254 1.5e-33 146.7 182 54.4
C03p37830 Brassica napus HOM05D000147 ORTHO05D001254 1.5e-33 146.7 182 54.4
BolC3t16072H Brassica oleracea HOM05D000147 ORTHO05D001254 1.5e-33 146.7 182 54.4
BraA02t07462Z Brassica rapa HOM05D000147 ORTHO05D001254 1.5e-33 146.7 158 60.1
BcaNung04057 Brassica carinata HOM05D000147 ORTHO05D001254 1.0e-32 144.1 190 51.6
A09p01930 Brassica napus HOM05D000147 ORTHO05D001254 7.2e-31 137.9 79 83.5
BcaB01g02037 Brassica carinata HOM05D000147 ORTHO05D001254 1.2e-30 137.1 79 83.5
BcaNung04060 Brassica carinata HOM05D000147 ORTHO05D001254 1.2e-30 137.1 79 83.5
Carub.0006s3466 Capsella rubella HOM05D000147 ORTHO05D001254 2.3e-29 132.9 184 46.7
AT4G02480 Arabidopsis thaliana HOM05D000147 ORTHO05D001254 3.0e-29 132.5 185 45.9
AL6G50580 Arabidopsis lyrata HOM05D000147 ORTHO05D001254 8.8e-29 131.0 186 45.7
BolC4t23613H Brassica oleracea HOM05D010985 ORTHO05D014960 8.8e-29 131.0 86 77.9
BcaC03g16129 Brassica carinata HOM05D000147 ORTHO05D001254 2.0e-28 129.8 159 54.7
BolC3t20672H Brassica oleracea HOM05D010985 ORTHO05D014960 2.6e-28 129.4 80 81.2
C04p20830 Brassica napus HOM05D010985 ORTHO05D014960 4.4e-28 128.6 86 76.7
C08p34900 Brassica napus HOM05D010985 ORTHO05D014960 2.8e-27 125.9 86 76.7
CARHR250770 Cardamine hirsuta HOM05D000147 ORTHO05D001254 3.7e-27 125.6 80 78.8
BolC2t09916H Brassica oleracea HOM05D000147 ORTHO05D001254 3.1e-26 122.5 182 48.4
Sp1g01890 Schrenkiella parvula HOM05D000147 ORTHO05D001254 7.7e-25 117.9 168 47.6
BcaC07g42297 Brassica carinata HOM05D000147 ORTHO05D001254 2.2e-24 116.3 78 67.9
BcaB01g02461 Brassica carinata HOM05D000147 ORTHO05D001254 2.9e-24 115.9 184 46.2
BcaC02g11070 Brassica carinata HOM05D010985 ORTHO05D014960 8.5e-24 114.4 105 63.8
Aa31LG5G2110 Aethionema arabicum HOM05D000147 ORTHO05D001254 5.5e-23 111.7 80 70.0
Thhalv10006579m.g Eutrema salsugineum HOM05D000147 ORTHO05D001254 2.1e-22 109.8 80 68.8
AL1G12330 Arabidopsis lyrata HOM05D000147 ORTHO05D001254 4.7e-22 108.6 80 67.5
BcaC05g24573 Brassica carinata HOM05D000147 ORTHO05D014960 4.7e-22 108.6 168 48.8
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 4.7e-22 108.6 168 48.8
BolC5t28934H Brassica oleracea HOM05D000147 ORTHO05D001254 4.7e-22 108.6 168 48.8
BcaC05g24630 Brassica carinata HOM05D000147 ORTHO05D001254 1.4e-21 107.1 84 63.1
CARHR002240 Cardamine hirsuta HOM05D000147 ORTHO05D001254 5.2e-21 105.1 77 66.2
AT1G02890 Arabidopsis thaliana HOM05D000147 ORTHO05D001254 8.8e-21 104.4 80 65.0
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 2.0e-20 103.2 167 44.3
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 2.0e-20 103.2 167 44.3
A09p68470 Brassica napus HOM05D000147 ORTHO05D001254 3.3e-20 102.4 132 47.0
THA.LOC104825975 Tarenaya hassleriana HOM05D000147 ORTHO05D001254 1.3e-19 100.5 100 52.0
BraA09t42190Z Brassica rapa HOM05D000147 ORTHO05D001254 3.7e-19 99.0 63 73.0
THA.LOC104815931 Tarenaya hassleriana HOM05D000147 ORTHO05D001254 1.4e-18 97.1 72 69.4
BcaB03g15754 Brassica carinata HOM05D000147 ORTHO05D014960 2.4e-18 96.3 81 58.0
THA.LOC104801270 Tarenaya hassleriana HOM05D000147 ORTHO05D001254 1.2e-17 94.0 88 56.8
BolC6t38537H Brassica oleracea HOM05D010985 ORTHO05D014960 7.0e-10 68.2 46 80.4
C07p03450 Brassica napus HOM05D010985 ORTHO05D014960 1.3e-08 63.9 54 68.5
Atru.chr5.1173 Acer truncatum HOM05D000147 ORTHO05D001254 2.2e-08 63.2 87 37.9
Gohir.A11G115000 Gossypium hirsutum HOM05D000147 ORTHO05D001254 3.8e-08 62.4 100 41.0
Gohir.D12G135433 Gossypium hirsutum HOM05D000147 ORTHO05D001254 3.8e-08 62.4 115 38.3
Gorai.008G146500 Gossypium raimondii HOM05D000147 ORTHO05D001254 3.8e-08 62.4 115 38.3
Gohir.D11G120000 Gossypium hirsutum HOM05D000147 ORTHO05D001254 8.5e-08 61.2 73 43.8
Gorai.007G128700 Gossypium raimondii HOM05D000147 ORTHO05D001254 8.5e-08 61.2 100 39.0
Duzib138G0484 Durio zibethinus HOM05D000147 ORTHO05D001254 1.5e-07 60.5 75 44.0
Dinv19709 Davidia involucrata HOM05D000147 ORTHO05D001254 2.5e-07 59.7 114 30.7
Dinv33035 Davidia involucrata HOM05D000147 ORTHO05D001254 2.5e-07 59.7 115 34.8
A07p13870 Brassica napus HOM05D010985 ORTHO05D014949 3.2e-07 59.3 38 78.9
BraA03t12563Z Brassica rapa HOM05D010985 ORTHO05D014949 3.2e-07 59.3 38 78.9
COL.COLO4_23369 Corchorus olitorius HOM05D000147 ORTHO05D001254 3.2e-07 59.3 116 35.3
Thecc.01G297700 Theobroma cacao HOM05D000147 ORTHO05D001254 4.2e-07 58.9 73 43.8
BraA05t22753Z Brassica rapa HOM05D010985 ORTHO05D014949 9.4e-07 57.8 38 76.3
Rhsim01G0284000 Rhododendron simsii HOM05D000147 ORTHO05D001254 9.4e-07 57.8 92 35.9
Gohir.A12G131700 Gossypium hirsutum HOM05D000147 ORTHO05D001254 1.2e-06 57.4 191 31.9
BcaB07g33235 Brassica carinata HOM05D000147 ORTHO05D094792 1.6e-06 57.0 35 74.3
A02p40780 Brassica napus HOM05D021362 ORTHO05D014960 1.6e-06 57.0 37 78.4
Ciclev10018538m.g Citrus clementina HOM05D000147 ORTHO05D001254 1.6e-06 57.0 98 37.8
TWI14G0377 Tripterygium wilfordii HOM05D000147 ORTHO05D001254 3.6e-06 55.8 173 31.8
AL1G56440 Arabidopsis lyrata HOM05D000147 ORTHO05D001254 6.1e-06 55.1 57 47.4
Sc05g0004160 Simmondsia chinensis HOM05D000147 ORTHO05D001254 6.1e-06 55.1 74 37.8
DCAR_005802 Daucus carota HOM05D000147 ORTHO05D001254 8.0e-06 54.7 93 35.5
DCAR_012389 Daucus carota HOM05D000147 ORTHO05D001254 8.0e-06 54.7 54 51.9
Gohir.D08G084600 Gossypium hirsutum HOM05D000147 ORTHO05D001254 8.0e-06 54.7 90 35.6
Gorai.004G089000 Gossypium raimondii HOM05D000147 ORTHO05D001254 8.0e-06 54.7 90 35.6


User provided reference genes

Program Settings