Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19752 Brassica carinata HOM05D008154 ORTHO05D012061 4.5e-109 397.9 194 100.0
BcaC04g23599 Brassica carinata HOM05D008154 ORTHO05D012061 1.8e-94 349.4 187 89.8
BraA06t26584Z Brassica rapa HOM05D008154 ORTHO05D012061 6.5e-84 314.3 188 79.8
Sp2g21650 Schrenkiella parvula HOM05D008154 ORTHO05D012061 1.9e-83 312.8 189 79.9
BolC9t53583H Brassica oleracea HOM05D008154 ORTHO05D012557 3.2e-83 312.0 163 90.8
A06p36580 Brassica napus HOM05D008154 ORTHO05D012061 7.2e-83 310.8 187 79.1
C09p06570 Brassica napus HOM05D008154 ORTHO05D012557 9.4e-83 310.5 170 88.8
A09p06010 Brassica napus HOM05D008154 ORTHO05D012557 1.5e-80 303.1 160 90.6
BraA09t36243Z Brassica rapa HOM05D008154 ORTHO05D012557 1.5e-80 303.1 160 90.6
C07p41900 Brassica napus HOM05D008154 ORTHO05D012061 8.2e-79 297.4 174 80.5
BolC7t44720H Brassica oleracea HOM05D008154 ORTHO05D012061 1.8e-78 296.2 174 79.9
BcaNung03981 Brassica carinata HOM05D008154 ORTHO05D012061 6.5e-76 287.7 171 80.1
Thhalv10005491m.g Eutrema salsugineum HOM05D008154 ORTHO05D012557 2.0e-72 276.2 162 77.8
CARHR187350 Cardamine hirsuta HOM05D008154 ORTHO05D012061 9.7e-72 273.9 176 71.6
THA.LOC104799699 Tarenaya hassleriana HOM05D008154 ORTHO05D012061 1.0e-68 263.8 174 67.2
AL6G38080 Arabidopsis lyrata HOM05D008154 ORTHO05D012557 1.1e-67 260.4 165 74.5
AT5G26090 Arabidopsis thaliana HOM05D008154 ORTHO05D012557 1.2e-64 250.4 174 70.1
Carub.0006s2384 Capsella rubella HOM05D008154 ORTHO05D012557 1.7e-63 246.5 163 74.2
THA.LOC104811313 Tarenaya hassleriana HOM05D008154 ORTHO05D012557 2.4e-62 242.7 186 62.9
AT5G11830 Arabidopsis thaliana HOM05D008154 ORTHO05D012061 2.9e-52 209.1 157 58.0
AL6G22580 Arabidopsis lyrata HOM05D008154 ORTHO05D012061 1.1e-51 207.2 169 54.4
Sp6g31770 Schrenkiella parvula HOM05D008154 ORTHO05D012061 1.5e-51 206.8 163 58.9
A02p01230 Brassica napus HOM05D008154 ORTHO05D012061 2.5e-51 206.1 167 58.1
BraA02t05102Z Brassica rapa HOM05D008154 ORTHO05D012061 2.5e-51 206.1 167 58.1
Thhalv10015823m.g Eutrema salsugineum HOM05D008154 ORTHO05D012061 2.5e-51 206.1 160 60.0
BcaC03g13395 Brassica carinata HOM05D008154 ORTHO05D012061 3.3e-51 205.7 167 57.5
C02p05410 Brassica napus HOM05D008154 ORTHO05D012061 3.3e-51 205.7 167 57.5
BolC2t06489H Brassica oleracea HOM05D008154 ORTHO05D012061 9.5e-51 204.1 167 56.9
Carub.0006s1036 Capsella rubella HOM05D008154 ORTHO05D012061 8.0e-50 201.1 168 54.8
BcaNung02650 Brassica carinata HOM05D008154 ORTHO05D012061 8.9e-49 197.6 167 55.1
BcaNung03980 Brassica carinata HOM05D008154 ORTHO05D012061 2.9e-47 192.6 117 76.9
CARHR201330 Cardamine hirsuta HOM05D008154 ORTHO05D012061 1.4e-46 190.3 151 54.3
THA.LOC104811241 Tarenaya hassleriana HOM05D008154 ORTHO05D012061 5.9e-45 184.9 188 49.5
BcaB01g05451 Brassica carinata HOM05D008154 ORTHO05D012061 1.6e-42 176.8 164 51.2
Aa31LG8G3050 Aethionema arabicum HOM05D008154 ORTHO05D012553 6.2e-18 95.1 174 31.6
BraA05t22176Z Brassica rapa HOM05D008154 ORTHO05D012553 6.9e-17 91.7 161 34.2
A05p33540 Brassica napus HOM05D008154 ORTHO05D012553 2.0e-16 90.1 161 33.5
BolC5t33799H Brassica oleracea HOM05D008154 ORTHO05D012553 2.0e-16 90.1 174 32.8
BraA05t22175Z Brassica rapa HOM05D008154 ORTHO05D012553 2.0e-16 90.1 161 33.5
Sp3g14190 Schrenkiella parvula HOM05D008154 ORTHO05D012553 2.0e-16 90.1 176 32.4
C05p50530 Brassica napus HOM05D008154 ORTHO05D012553 2.6e-16 89.7 174 32.8
C01p48500 Brassica napus HOM05D008154 ORTHO05D012553 7.6e-16 88.2 175 31.4
Thhalv10022366m.g Eutrema salsugineum HOM05D008154 ORTHO05D012553 9.9e-16 87.8 173 32.4
BcaC09g48565 Brassica carinata HOM05D008154 ORTHO05D012553 1.3e-15 87.4 175 32.6
BolC1t04810H Brassica oleracea HOM05D008154 ORTHO05D012553 1.3e-15 87.4 175 32.6
BcaB04g20900 Brassica carinata HOM05D008154 ORTHO05D012553 1.7e-15 87.0 174 31.6
BcaC05g28926 Brassica carinata HOM05D008154 ORTHO05D012553 1.7e-15 87.0 172 32.6
A01p38240 Brassica napus HOM05D008154 ORTHO05D012553 1.7e-15 87.0 175 32.0
BraA01t03880Z Brassica rapa HOM05D008154 ORTHO05D012553 1.7e-15 87.0 175 32.0
AT3G15860 Arabidopsis thaliana HOM05D008154 ORTHO05D012553 2.9e-15 86.3 170 31.2
Carub.0003s1560 Capsella rubella HOM05D008154 ORTHO05D012553 2.9e-15 86.3 174 32.2
THA.LOC104810614 Tarenaya hassleriana HOM05D008154 ORTHO05D012553 3.5e-13 79.3 136 36.8
BraA03t09861Z Brassica rapa HOM05D003166 ORTHO05D003605 2.3e-12 76.6 58 56.9
BolC3t13113H Brassica oleracea HOM05D000239 ORTHO05D000484 3.0e-12 76.3 58 55.2
Sp2g21640 Schrenkiella parvula HOM05D008154 ORTHO05D012557 1.5e-11 73.9 158 31.6
Aa31LG11G5040 Aethionema arabicum HOM05D008154 ORTHO05D012557 4.8e-10 68.9 178 29.8
BraA02t08884Z Brassica rapa HOM05D008154 ORTHO05D012557 1.4e-09 67.4 177 30.5
A02p39190 Brassica napus HOM05D008154 ORTHO05D012557 1.8e-09 67.0 188 29.3
BcaB04g19751 Brassica carinata HOM05D008154 ORTHO05D012557 4.0e-09 65.9 166 31.3
BcaC03g17839 Brassica carinata HOM05D008154 ORTHO05D012557 4.0e-09 65.9 190 29.5
C02p58790 Brassica napus HOM05D008154 ORTHO05D012557 4.0e-09 65.9 190 29.5
BolC2t11938H Brassica oleracea HOM05D008154 ORTHO05D012557 4.0e-09 65.9 186 28.0
BcaB07g32008 Brassica carinata HOM05D008154 ORTHO05D012557 1.5e-08 63.9 149 32.2
BcaB07g29945 Brassica carinata HOM05D008154 ORTHO05D012557 1.7e-07 60.5 126 33.3
BcaC04g23600 Brassica carinata HOM05D008154 ORTHO05D012557 5.4e-06 55.5 158 29.1


User provided reference genes

Program Settings