Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19631 Brassica carinata HOM05D004404 ORTHO05D005070 7.6e-66 253.8 142 100.0
BcaC04g23722 Brassica carinata HOM05D004404 ORTHO05D005070 5.1e-54 214.5 145 88.3
C09p05370 Brassica napus HOM05D004404 ORTHO05D005070 5.1e-54 214.5 145 88.3
BolC9t53465H Brassica oleracea HOM05D004404 ORTHO05D005070 5.1e-54 214.5 145 88.3
A09p04970 Brassica napus HOM05D004404 ORTHO05D005070 1.5e-53 213.0 145 89.0
Thhalv10005085m.g Eutrema salsugineum HOM05D004404 ORTHO05D005070 1.5e-53 213.0 148 87.8
Sp2g20060 Schrenkiella parvula HOM05D004404 ORTHO05D005070 3.7e-52 208.4 149 85.2
CARHR185320 Cardamine hirsuta HOM05D004404 ORTHO05D005070 1.5e-50 203.0 149 85.2
BcaC06g30686 Brassica carinata HOM05D004404 ORTHO05D005070 4.5e-50 201.4 147 84.4
Carub.0006s2600 Capsella rubella HOM05D004404 ORTHO05D005070 4.5e-50 201.4 149 85.2
A06p38070 Brassica napus HOM05D004404 ORTHO05D005070 1.0e-49 200.3 144 85.4
BraA06t26722Z Brassica rapa HOM05D004404 ORTHO05D005070 3.8e-49 198.4 144 84.7
BolC7t44551H Brassica oleracea HOM05D004404 ORTHO05D005070 8.5e-49 197.2 144 84.7
AL6G40780 Arabidopsis lyrata HOM05D004404 ORTHO05D005070 2.5e-48 195.7 151 83.4
C02p57620 Brassica napus HOM05D004404 ORTHO05D005070 4.2e-48 194.9 142 84.5
AT5G28750 Arabidopsis thaliana HOM05D004404 ORTHO05D005070 9.4e-48 193.7 150 84.7
BcaNung02110 Brassica carinata HOM05D004404 ORTHO05D005070 9.4e-48 193.7 146 84.2
C07p40140 Brassica napus HOM05D004404 ORTHO05D005070 9.4e-48 193.7 146 84.2
BcaC03g17750 Brassica carinata HOM05D004404 ORTHO05D005070 5.9e-42 174.5 142 78.9
BolC2t11835H Brassica oleracea HOM05D004404 ORTHO05D005070 7.0e-35 151.0 112 83.9
Aa31LG11G8580 Aethionema arabicum HOM05D004404 ORTHO05D005070 6.5e-33 144.4 173 63.6
THA.LOC104821674 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 8.5e-33 144.1 153 66.0
BraA02t08810Z Brassica rapa HOM05D004404 ORTHO05D005070 4.4e-29 131.7 142 64.1
Manes.09G153100 Manihot esculenta HOM05D004404 ORTHO05D005070 9.7e-29 130.6 146 58.9
Duzib177G0223 Durio zibethinus HOM05D004404 ORTHO05D005070 4.8e-28 128.3 149 57.0
FAN02G1710 Fragaria x ananassa HOM05D004404 ORTHO05D005070 4.1e-27 125.2 142 54.9
Potri.005G053400 Populus trichocarpa HOM05D004404 ORTHO05D005070 4.1e-27 125.2 151 56.3
Cpa.g.sc117.91 Carica papaya HOM05D004404 ORTHO05D005070 7.0e-27 124.4 152 55.9
TWI56G0209 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 7.0e-27 124.4 138 58.7
Duzib106G1455 Durio zibethinus HOM05D004404 ORTHO05D005070 1.2e-26 123.6 149 55.0
FvH4_6g02920 Fragaria vesca HOM05D004404 ORTHO05D005070 1.2e-26 123.6 146 55.5
FAN05G1086 Fragaria x ananassa HOM05D004404 ORTHO05D005070 1.2e-26 123.6 146 55.5
FAN09G2523 Fragaria x ananassa HOM05D004404 ORTHO05D005070 1.2e-26 123.6 146 55.5
FAN14G0219 Fragaria x ananassa HOM05D004404 ORTHO05D005070 1.2e-26 123.6 146 55.5
arahy.Tifrunner.gnm1.ann1.E7WHUM Arachis hypogaea HOM05D004404 ORTHO05D005070 2.7e-26 122.5 134 59.7
CiPaw.08G123500 Carya illinoinensis HOM05D004404 ORTHO05D005070 5.9e-26 121.3 135 57.8
RcHm_v2.0_Chr3g0451121 Rosa chinensis HOM05D004404 ORTHO05D005070 7.7e-26 120.9 150 55.3
Psat3g007120 Pisum sativum HOM05D004404 ORTHO05D005070 1.0e-25 120.6 149 55.0
Ciclev10002770m.g Citrus clementina HOM05D004404 ORTHO05D005070 1.3e-25 120.2 149 57.7
Lsat_1_v5_gn_5_40280 Lactuca sativa HOM05D004404 ORTHO05D005070 1.3e-25 120.2 139 54.7
arahy.Tifrunner.gnm1.ann1.Z087RK Arachis hypogaea HOM05D004404 ORTHO05D005070 1.7e-25 119.8 143 57.3
MELO3C015378.2 Cucumis melo HOM05D004404 ORTHO05D005070 1.7e-25 119.8 142 55.6
Gohir.D13G175500 Gossypium hirsutum HOM05D004404 ORTHO05D005070 2.2e-25 119.4 157 56.7
Gorai.013G200900 Gossypium raimondii HOM05D004404 ORTHO05D005070 2.2e-25 119.4 157 56.7
Dinv10012 Davidia involucrata HOM05D004404 ORTHO05D005070 3.8e-25 118.6 134 55.2
PGR004G0701 Punica granatum HOM05D004404 ORTHO05D005070 3.8e-25 118.6 144 56.2
TWI12G0609 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 3.8e-25 118.6 151 55.0
Thecc.05G283400 Theobroma cacao HOM05D004404 ORTHO05D005070 6.5e-25 117.9 117 60.7
CsaV3_1G039570 Cucumis sativus L. HOM05D004404 ORTHO05D005070 8.5e-25 117.5 142 54.9
GSVIVG01021788001 Vitis vinifera HOM05D004404 ORTHO05D005070 8.5e-25 117.5 146 56.2
Sed0027735 Sechium edule HOM05D004404 ORTHO05D005070 1.5e-24 116.7 152 53.3
Lalb_Chr21g0310981 Lupinus albus HOM05D004404 ORTHO05D005070 1.9e-24 116.3 146 54.1
Sed0025331 Sechium edule HOM05D004404 ORTHO05D005070 1.9e-24 116.3 155 53.5
Atru.chr2.818 Acer truncatum HOM05D004404 ORTHO05D005070 2.5e-24 115.9 151 51.0
Glyma.10G162200 Glycine max HOM05D004404 ORTHO05D005070 2.5e-24 115.9 137 54.0
Hma1.2p1_0817F.1_g223110 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 3.2e-24 115.5 151 53.0
Lj1g0028137 Lotus japonicus HOM05D004404 ORTHO05D005070 3.2e-24 115.5 136 57.4
Nitab4.5_0003279g0050 Nicotiana tabacum HOM05D004404 ORTHO05D005070 3.2e-24 115.5 124 58.1
EL10Ac4g09141 Beta vulgaris HOM05D004404 ORTHO05D005070 7.2e-24 114.4 152 53.9
MD04G1224600 Malus domestica HOM05D004404 ORTHO05D005070 7.2e-24 114.4 146 52.1
MD12G1241300 Malus domestica HOM05D004404 ORTHO05D005070 7.2e-24 114.4 153 51.6
THA.LOC104805820 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 9.4e-24 114.0 140 52.9
TPR.G6977 Trifolium pratense HOM05D004404 ORTHO05D005070 9.4e-24 114.0 91 71.4
Phvul.006G101800 Phaseolus vulgaris HOM05D004404 ORTHO05D005070 1.2e-23 113.6 145 53.1
Hund06970 Selenicereus undatus HOM05D004404 ORTHO05D005070 2.1e-23 112.8 126 60.3
ATR0665G151 Amborella trichopoda HOM05D004404 ORTHO05D005070 4.7e-23 111.7 131 52.7
Hma1.2p1_0083F.1_g042910 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 4.7e-23 111.7 146 51.4
Manes.08G134600 Manihot esculenta HOM05D004404 ORTHO05D005070 4.7e-23 111.7 152 53.3
Haze_04360 Corylus avellana HOM05D004404 ORTHO05D005070 6.1e-23 111.3 168 50.6
TAR633G0732 Trochodendron aralioides HOM05D004404 ORTHO05D005070 6.1e-23 111.3 142 51.4
Ca_09422_v3 Cicer arietinum L. HOM05D001346 ORTHO05D001205 8.0e-23 110.9 120 59.2
ECA240G2961 Erigeron canadensis HOM05D004404 ORTHO05D005070 8.0e-23 110.9 152 50.0
Medtr1g080910 Medicago truncatula HOM05D004404 ORTHO05D005070 8.0e-23 110.9 95 65.3
Sed0015873 Sechium edule HOM05D004404 ORTHO05D005070 8.0e-23 110.9 109 63.3
Sed0023665 Sechium edule HOM05D004404 ORTHO05D005070 8.0e-23 110.9 142 54.2
Glyma.03G247200 Glycine max HOM05D004404 ORTHO05D005070 1.0e-22 110.5 145 53.1
Medtr7g115180 Medicago truncatula HOM05D004404 ORTHO05D005070 1.4e-22 110.2 141 53.9
TAR362G1272 Trochodendron aralioides HOM05D004404 ORTHO05D005070 1.4e-22 110.2 135 49.6
ECA246G2005 Erigeron canadensis HOM05D004404 ORTHO05D005070 1.8e-22 109.8 109 65.1
HanXRQChr05g0158351 Helianthus annuus HOM05D004404 ORTHO05D005070 1.8e-22 109.8 126 53.2
Nn1g02537 Nelumbo nucifera HOM05D004404 ORTHO05D005070 2.3e-22 109.4 139 50.4
DCAR_009267 Daucus carota HOM05D004404 ORTHO05D005070 4.0e-22 108.6 132 53.8
Psat6g144600 Pisum sativum HOM05D004404 ORTHO05D005070 4.0e-22 108.6 140 52.9
Ca_10045_v3 Cicer arietinum L. HOM05D004404 ORTHO05D005070 5.2e-22 108.2 130 58.5
Glyma.19G244900 Glycine max HOM05D004404 ORTHO05D005070 5.2e-22 108.2 135 53.3
Aqoxy5G00363 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 6.8e-22 107.8 133 54.1
AUR62001008 Chenopodium quinoa HOM05D004404 ORTHO05D005070 6.8e-22 107.8 94 66.0
Lj5g0014543 Lotus japonicus HOM05D004404 ORTHO05D005070 6.8e-22 107.8 122 54.1
Rhsim07G0075300 Rhododendron simsii HOM05D004404 ORTHO05D005070 6.8e-22 107.8 115 56.5
vmacro13827 Vaccinium macrocarpon HOM05D004404 ORTHO05D005070 8.8e-22 107.5 140 52.1
Actinidia32805 Actinidia chinensis HOM05D004404 ORTHO05D005070 1.2e-21 107.1 130 52.3
DCAR_006653 Daucus carota HOM05D004404 ORTHO05D005070 1.5e-21 106.7 142 50.0
Peaxi162Scf00282g00419 Petunia axillaris HOM05D004404 ORTHO05D005070 2.0e-21 106.3 137 51.1
Lalb_Chr02g0148831 Lupinus albus HOM05D004404 ORTHO05D005070 2.6e-21 105.9 151 49.0
Peaxi162Scf00071g00832 Petunia axillaris HOM05D004404 ORTHO05D005070 2.6e-21 105.9 139 54.0
TPR.G12949 Trifolium pratense HOM05D001346 ORTHO05D001205 3.4e-21 105.5 144 51.4
Ah.04g162340 Amaranthus hybridus HOM05D004404 ORTHO05D005070 4.4e-21 105.1 150 50.0
QL03p025881 Quercus lobata HOM05D004404 ORTHO05D005070 5.7e-21 104.8 114 59.6
SGA_v2.0_scaffold80G25905 Striga asiatica HOM05D004404 ORTHO05D005070 5.7e-21 104.8 131 53.4
A02p38290 Brassica napus HOM05D004404 ORTHO05D005070 7.5e-21 104.4 103 65.0
Sopen01g040980 Solanum pennellii HOM05D004404 ORTHO05D005070 7.5e-21 104.4 141 50.4
VMungo0540G1464 Vigna mungo HOM05D004404 ORTHO05D005070 7.5e-21 104.4 145 51.0
COL.COLO4_15349 Corchorus olitorius HOM05D004404 ORTHO05D005070 1.3e-20 103.6 181 44.2
Migut.B01092 Erythranthe guttata HOM05D004404 ORTHO05D005070 1.3e-20 103.6 139 51.1
Hund22096 Selenicereus undatus HOM05D004404 ORTHO05D005070 1.3e-20 103.6 144 50.7
TAR365G1136 Trochodendron aralioides HOM05D004404 ORTHO05D005070 1.3e-20 103.6 141 48.9
Gohir.A13G170100 Gossypium hirsutum HOM05D004404 ORTHO05D005070 2.8e-20 102.4 113 59.3
Solyc01g097310.3 Solanum lycopersicum HOM05D004404 ORTHO05D005070 2.8e-20 102.4 152 45.4
Migut.N01913 Erythranthe guttata HOM05D004404 ORTHO05D005070 3.7e-20 102.1 143 48.3
QL03p026586 Quercus lobata HOM05D004404 ORTHO05D005070 4.8e-20 101.7 110 60.0
Cc02_g30710 Coffea canephora HOM05D004404 ORTHO05D005070 6.3e-20 101.3 101 60.4
Oeu038443.2 Olea europaea HOM05D004404 ORTHO05D005070 6.3e-20 101.3 88 63.6
MBI04_g08412_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 8.3e-20 100.9 122 51.6
Nitab4.5_0008996g0030 Nicotiana tabacum HOM05D004404 ORTHO05D005070 8.3e-20 100.9 152 48.7
Zm00001eb218840 Zea mays HOM05D004404 ORTHO05D005070 8.3e-20 100.9 103 61.2
CDE07G0487 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 1.4e-19 100.1 131 51.1
Migut.O00778 Erythranthe guttata HOM05D004404 ORTHO05D005070 1.4e-19 100.1 143 48.3
CAN.G134.95 Capsicum annuum HOM05D004404 ORTHO05D005070 1.8e-19 99.8 140 48.6
HPP92_017518 Vanilla planifolia HOM05D004404 ORTHO05D005070 1.8e-19 99.8 137 52.6
Prupe.6G343300 Prunus persica HOM05D004404 ORTHO05D005070 3.1e-19 99.0 109 57.8
PSO210G4542 Papaver somniferum HOM05D004404 ORTHO05D005070 4.1e-19 98.6 104 54.8
Sc09g0003920 Simmondsia chinensis HOM05D004404 ORTHO05D005070 4.1e-19 98.6 139 54.0
Sabra13G0037800 Salix brachista HOM05D004404 ORTHO05D005070 5.4e-19 98.2 108 60.2
Glyma.20G224600 Glycine max HOM05D004404 ORTHO05D005070 9.1e-19 97.4 95 62.1
Lsat_1_v5_gn_8_115981 Lactuca sativa HOM05D004404 ORTHO05D005070 1.2e-18 97.1 143 49.0
Nitab4.5_0001592g0040 Nicotiana tabacum HOM05D004404 ORTHO05D005070 1.2e-18 97.1 125 50.4
PSO461G0019 Papaver somniferum HOM05D004404 ORTHO05D005070 1.2e-18 97.1 104 54.8
COL.COLO4_00126 Corchorus olitorius HOM05D004404 ORTHO05D005070 2.0e-18 96.3 109 55.0
Os03g0634000 Oryza sativa ssp. japonica HOM05D004404 ORTHO05D005070 2.0e-18 96.3 61 80.3
SEGI_08397 Sequoiadendron giganteum HOM05D004404 ORTHO05D005070 2.0e-18 96.3 95 58.9
Dinv04734 Davidia involucrata HOM05D004404 ORTHO05D005070 4.5e-18 95.1 109 56.0
CDE04G3433 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 7.7e-18 94.4 147 49.7
Aqoxy2G03510 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 1.3e-17 93.6 75 64.0
MSTRG.28017 Avicennia marina HOM05D004404 ORTHO05D005070 1.3e-17 93.6 130 50.0
CDE07G0557 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 2.3e-17 92.8 131 51.9
MBI11_g15915_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 2.3e-17 92.8 149 43.6
CBR_g20020 Chara braunii HOM05D004404 ORTHO05D005070 2.9e-17 92.4 79 62.0
Cfa006425 Carpinus fangiana HOM05D004404 ORTHO05D005070 5.0e-17 91.7 101 60.4
HanXRQChr09g0258871 Helianthus annuus HOM05D004404 ORTHO05D005070 6.5e-17 91.3 139 46.8
Mapoly0001s0151 Marchantia polymorpha HOM05D004404 ORTHO05D005070 6.5e-17 91.3 138 48.6
SMO174G0006 Selaginella moellendorffii HOM05D004404 ORTHO05D005070 1.9e-16 89.7 83 63.9
unitig_899.g14740 Utricularia gibba HOM05D000778 ORTHO05D005070 2.5e-16 89.4 155 41.9
MSTRG.20447 Avicennia marina HOM05D004404 ORTHO05D005070 3.3e-16 89.0 101 55.4
Cre10.g438550 Chlamydomonas reinhardtii HOM05D004404 ORTHO05D005070 3.3e-16 89.0 89 59.6
AagrBONN_evm.TU.Sc2ySwM_117.2792 Anthoceros agrestis HOM05D004404 ORTHO05D005070 4.2e-16 88.6 47 95.7
PSO832G3549 Papaver somniferum HOM05D004404 ORTHO05D005070 5.5e-16 88.2 98 54.1
ClCG03G016400 Citrullus lanatus HOM05D004404 ORTHO05D005070 7.2e-16 87.8 193 38.9
Oeu016441.1 Olea europaea HOM05D004404 ORTHO05D005070 7.2e-16 87.8 61 72.1
PGSC0003DMG400019456 Solanum tuberosum HOM05D004404 ORTHO05D005070 9.5e-16 87.4 163 41.1
PSO210G4640 Papaver somniferum HOM05D004404 ORTHO05D005070 1.2e-15 87.0 98 52.0
Pp3c8_14190 Physcomitrium patens HOM05D004404 ORTHO05D005070 3.6e-15 85.5 141 45.4
Potri.013G040900 Populus trichocarpa HOM05D004404 ORTHO05D005070 3.6e-15 85.5 99 57.6
SalBow8G4983 Salvia bowleyana HOM05D004404 ORTHO05D005070 2.3e-14 82.8 100 51.0
MCO09G790 Micromonas commoda HOM05D004404 ORTHO05D005070 4.0e-14 82.0 82 53.7
Zm00001eb051040 Zea mays HOM05D004404 ORTHO05D005070 4.0e-14 82.0 47 87.2
Oeu027474.1 Olea europaea HOM05D004404 ORTHO05D005070 6.8e-14 81.3 85 56.5
SGA_v2.0_scaffold81G26090 Striga asiatica HOM05D004404 ORTHO05D005070 1.2e-13 80.5 104 49.0
Pp3c15_9990 Physcomitrium patens HOM05D004404 ORTHO05D005070 2.0e-13 79.7 139 46.8
MD16G1158600 Malus domestica HOM05D004404 ORTHO05D005070 1.7e-12 76.6 51 72.5
SGA_v2.0_scaffold55G19806 Striga asiatica HOM05D004404 ORTHO05D005070 3.8e-09 65.5 41 78.0
C04p55220 Brassica napus HOM05D004404 ORTHO05D005070 7.3e-08 61.2 73 56.2
BolC4t27061H Brassica oleracea HOM05D000230 ORTHO05D005070 7.3e-08 61.2 73 56.2
Nitab4.5_0013900g0010 Nicotiana tabacum HOM05D004404 ORTHO05D005070 6.1e-07 58.2 97 42.3
Ah.13g068730 Amaranthus hybridus HOM05D005376 ORTHO05D006481 1.4e-06 57.0 91 39.6
ClCG05G008230 Citrullus lanatus HOM05D005376 ORTHO05D006481 5.2e-06 55.1 62 43.5
A03p15670 Brassica napus HOM05D005376 ORTHO05D006481 6.8e-06 54.7 63 42.9
CDE09G0642 Ceratophyllum demersum HOM05D005376 ORTHO05D006481 6.8e-06 54.7 48 54.2
CANSAT21G2457 Cannabis sativa HOM05D005376 ORTHO05D006481 8.9e-06 54.3 72 44.4
MCO14G251 Micromonas commoda HOM05D005376 ORTHO05D006481 8.9e-06 54.3 79 43.0
Zm00001eb085050 Zea mays HOM05D005376 ORTHO05D006481 8.9e-06 54.3 98 37.8
Zm00001eb421330 Zea mays HOM05D005376 ORTHO05D006481 8.9e-06 54.3 98 37.8


User provided reference genes

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