Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 6.3e-255 883.6 456 100.0
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 2.1e-157 559.7 602 58.1
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 2.1e-157 559.7 602 58.1
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 2.1e-157 559.7 602 58.1
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 1.8e-156 556.6 606 57.8
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 3.9e-156 555.4 569 60.8
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 9.7e-155 550.8 609 57.5
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 9.7e-155 550.8 609 57.5
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 8.2e-154 547.7 609 57.6
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 4.2e-150 535.4 605 56.0
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 1.3e-146 523.9 568 57.7
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 2.8e-146 522.7 606 55.0
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 1.2e-144 517.3 577 57.4
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 4.0e-140 502.3 565 56.5
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 4.8e-138 495.4 535 58.5
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 5.5e-134 481.9 603 51.9
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 7.2e-134 481.5 610 51.0
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 1.6e-133 480.3 604 51.5
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 4.0e-132 475.7 605 51.7
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 1.2e-128 464.2 603 50.7
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 5.0e-127 458.8 606 48.8
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 8.9e-124 448.0 423 63.6
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 2.7e-120 436.4 606 47.4
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 5.9e-120 435.3 604 47.0
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 1.0e-119 434.5 605 46.6
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 1.3e-119 434.1 602 46.8
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 5.0e-119 432.2 613 47.0
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 6.6e-119 431.8 595 47.7
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 1.5e-118 430.6 606 45.9
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 1.5e-118 430.6 626 45.0
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 5.6e-118 428.7 592 47.8
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 9.5e-118 427.9 604 45.7
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 1.2e-117 427.6 620 45.0
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.2e-117 427.6 592 47.8
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 1.6e-117 427.2 597 47.1
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 2.8e-117 426.4 596 47.8
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 8.0e-117 424.9 592 47.5
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 1.0e-116 424.5 614 45.8
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 1.0e-116 424.5 610 45.1
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 3.0e-116 422.9 606 45.5
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 4.0e-116 422.5 607 46.5
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 8.9e-116 421.4 600 46.3
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 1.2e-115 421.0 597 46.7
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 2.0e-115 420.2 615 45.2
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 4.4e-115 419.1 622 44.4
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 4.4e-115 419.1 613 46.3
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 9.8e-115 417.9 597 46.4
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 1.3e-114 417.5 601 46.4
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 8.3e-114 414.8 606 44.2
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.4e-113 413.3 615 45.5
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 3.2e-113 412.9 599 45.7
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 5.4e-113 412.1 595 45.9
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 5.4e-113 412.1 414 56.3
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 1.2e-112 411.0 601 45.8
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 1.0e-111 407.9 592 45.4
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 1.0e-111 407.9 584 45.5
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 1.3e-111 407.5 413 55.7
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 8.6e-111 404.8 635 43.8
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 1.5e-110 404.1 610 43.8
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 4.3e-110 402.5 411 55.5
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 9.5e-110 401.4 613 44.2
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 1.2e-109 401.0 415 55.4
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 2.1e-109 400.2 614 45.0
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 2.8e-109 399.8 593 45.4
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 6.2e-109 398.7 615 44.1
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 8.0e-109 398.3 667 42.4
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 1.4e-108 397.5 414 55.3
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 1.8e-108 397.1 605 44.3
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 1.8e-108 397.1 593 44.0
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 8.9e-108 394.8 414 55.1
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 1.5e-107 394.0 606 43.7
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 3.4e-107 392.9 602 44.0
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 7.5e-107 391.7 610 43.1
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 7.5e-107 391.7 449 52.6
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 9.8e-107 391.3 613 43.2
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 1.7e-106 390.6 593 43.5
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 2.2e-106 390.2 599 43.7
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 2.9e-106 389.8 601 43.4
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 1.4e-105 387.5 416 54.3
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 1.9e-105 387.1 600 43.0
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 1.9e-105 387.1 591 43.7
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 1.9e-105 387.1 591 42.6
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 2.4e-105 386.7 584 43.5
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 3.2e-105 386.3 580 43.3
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 7.0e-105 385.2 615 43.1
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 2.7e-104 383.3 615 42.4
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 6.0e-104 382.1 608 43.8
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 1.0e-103 381.3 610 42.3
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 1.3e-103 380.9 615 42.8
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 3.0e-103 379.8 587 42.9
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 6.6e-103 378.6 438 51.4
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 8.6e-103 378.3 598 42.6
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 1.1e-102 377.9 614 42.2
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 5.6e-102 375.6 615 42.9
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 1.2e-101 374.4 613 42.7
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 3.6e-101 372.9 553 43.6
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 6.2e-101 372.1 617 42.3
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 8.1e-101 371.7 435 50.6
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.4e-100 370.9 601 42.8
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 1.2e-99 367.9 611 41.4
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 2.2e-98 363.6 613 40.9
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 1.1e-97 361.3 417 51.3
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 1.4e-97 360.9 417 50.8
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 2.7e-96 356.7 401 52.1
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 6.0e-96 355.5 414 50.2
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 8.1e-93 345.1 493 44.2
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 1.4e-92 344.4 442 46.4
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 4.0e-92 342.8 552 42.4
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 1.3e-90 337.8 444 45.0
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 2.1e-88 330.5 581 41.5
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 5.2e-84 315.8 593 38.6
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.2e-81 306.6 436 43.1
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 3.9e-79 299.7 615 35.4
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 6.9e-76 288.9 410 46.6
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 3.8e-74 283.1 334 51.2
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 8.4e-74 282.0 615 36.1
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 5.6e-70 269.2 399 44.4
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 3.8e-66 256.5 587 33.7
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 8.4e-66 255.4 370 43.0
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 2.8e-61 240.4 308 46.8
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.0e-58 231.9 392 39.0
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 1.9e-57 227.6 279 49.1
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 2.3e-55 220.7 299 50.8
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 3.0e-55 220.3 390 37.4
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 3.0e-55 220.3 390 37.4
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 6.7e-55 219.2 359 44.6
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 1.0e-50 205.3 418 34.2
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.3e-50 204.9 390 36.2
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 2.5e-46 190.7 150 64.0
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 9.7e-46 188.7 133 72.9
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 5.7e-38 162.9 418 31.1
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 5.3e-36 156.4 340 41.2
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 3.2e-33 147.1 401 31.7
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 1.4e-31 141.7 203 45.8
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 6.5e-18 96.3 179 35.2
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.0e-15 89.0 186 36.6
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 3.4e-14 84.0 237 38.0
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 5.7e-14 83.2 57 68.4
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.1e-12 77.4 110 40.0
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 1.6e-08 65.1 59 64.4
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 7.5e-06 56.2 73 45.2


User provided reference genes

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