Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19498 Brassica carinata HOM05D003551 ORTHO05D004869 3.2e-90 335.1 176 100.0
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 1.6e-60 236.5 131 93.9
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 5.9e-60 234.6 131 93.1
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 5.9e-60 234.6 131 93.1
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 1.7e-59 233.0 131 93.1
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 2.8e-57 225.7 134 88.8
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 6.1e-57 224.6 132 87.9
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 1.4e-56 223.4 134 86.6
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 1.4e-56 223.4 134 87.3
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 2.3e-56 222.6 131 86.3
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 1.2e-55 220.3 134 85.8
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 2.9e-54 215.7 132 84.8
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 2.4e-53 212.6 131 84.0
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 4.7e-49 198.4 134 74.6
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 8.9e-48 194.1 128 79.7
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 6.0e-44 181.4 107 86.0
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 2.3e-40 169.5 138 63.8
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 2.1e-36 156.4 139 57.6
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 7.8e-36 154.5 137 57.7
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 1.3e-35 153.7 137 58.4
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 1.3e-35 153.7 137 58.4
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 2.3e-35 152.9 137 60.6
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 3.0e-35 152.5 137 56.9
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 3.9e-35 152.1 137 57.7
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 6.6e-35 151.4 137 59.1
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 8.6e-35 151.0 137 57.7
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 1.1e-34 150.6 137 57.7
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 1.1e-34 150.6 137 58.4
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 1.5e-34 150.2 137 59.1
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 2.5e-34 149.4 137 57.7
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 2.5e-34 149.4 137 56.9
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 2.5e-34 149.4 137 56.9
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 3.3e-34 149.1 137 58.4
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 4.3e-34 148.7 137 56.9
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 4.3e-34 148.7 137 56.9
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 4.3e-34 148.7 137 56.2
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 4.3e-34 148.7 137 56.2
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 7.3e-34 147.9 137 56.2
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 9.5e-34 147.5 137 56.9
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 1.2e-33 147.1 137 55.5
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 1.2e-33 147.1 137 56.2
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 1.6e-33 146.7 137 56.9
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 1.6e-33 146.7 137 56.9
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 2.1e-33 146.4 137 56.2
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 2.8e-33 146.0 137 56.9
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 4.7e-33 145.2 137 55.5
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 6.2e-33 144.8 137 55.5
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 6.2e-33 144.8 153 53.6
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 6.2e-33 144.8 137 56.2
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 8.1e-33 144.4 141 55.3
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 8.1e-33 144.4 137 54.0
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 8.1e-33 144.4 134 53.7
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 1.1e-32 144.1 137 51.8
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 1.4e-32 143.7 137 56.2
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 4.0e-32 142.1 137 53.3
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 5.2e-32 141.7 137 55.5
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 5.2e-32 141.7 134 53.0
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 6.8e-32 141.4 141 53.9
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 6.8e-32 141.4 137 56.2
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 8.9e-32 141.0 137 56.2
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.2e-31 140.6 137 55.5
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 1.5e-31 140.2 139 51.8
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 2.0e-31 139.8 137 53.3
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 2.6e-31 139.4 128 56.2
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 3.4e-31 139.0 139 51.8
FAN07G2018 Fragaria x ananassa HOM05D003551 ORTHO05D004869 3.4e-31 139.0 139 51.8
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 3.4e-31 139.0 139 51.8
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 3.4e-31 139.0 134 52.2
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 3.4e-31 139.0 136 55.1
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 4.4e-31 138.7 138 54.3
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 4.4e-31 138.7 138 55.1
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 4.4e-31 138.7 137 55.5
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 5.8e-31 138.3 137 54.7
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 5.8e-31 138.3 137 53.3
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 7.6e-31 137.9 128 53.9
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 7.6e-31 137.9 134 52.2
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 7.6e-31 137.9 137 50.4
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 1.7e-30 136.7 137 50.4
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 2.2e-30 136.3 139 50.4
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 2.2e-30 136.3 137 51.8
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 4.9e-30 135.2 137 52.6
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 1.1e-29 134.0 137 48.9
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 1.9e-29 133.3 137 50.4
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 1.9e-29 133.3 137 52.6
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 2.4e-29 132.9 137 51.8
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 4.1e-29 132.1 134 51.5
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 4.1e-29 132.1 151 50.3
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 4.1e-29 132.1 142 46.5
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 5.4e-29 131.7 137 48.9
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 5.4e-29 131.7 137 52.6
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 7.1e-29 131.3 139 51.1
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 9.2e-29 131.0 137 49.6
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 9.2e-29 131.0 139 51.1
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 1.6e-28 130.2 137 46.7
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 4.6e-28 128.6 137 49.6
BcaB07g32274 Brassica carinata HOM05D003551 ORTHO05D004869 4.6e-28 128.6 70 95.7
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 4.6e-28 128.6 137 52.6
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 6.0e-28 128.3 129 49.6
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.0e-27 127.5 129 49.6
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.3e-27 127.1 134 50.0
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 1.7e-27 126.7 133 48.1
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 1.7e-27 126.7 135 52.6
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 2.3e-27 126.3 124 50.0
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 3.9e-27 125.6 137 46.0
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 5.6e-26 121.7 137 44.5
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 9.6e-26 120.9 137 48.9
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 2.1e-25 119.8 132 47.0
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 3.1e-24 115.9 129 47.3
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 4.0e-24 115.5 188 38.3
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 6.9e-24 114.8 119 47.9
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 5.8e-23 111.7 130 43.8
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 6.4e-22 108.2 139 45.3
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 1.6e-20 103.6 139 43.2
unitig_22.g6421 Utricularia gibba HOM05D003551 ORTHO05D004869 2.5e-18 96.3 86 59.3
Actinidia08116 Actinidia chinensis HOM05D003551 ORTHO05D004869 2.1e-17 93.2 75 64.0
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 2.8e-17 92.8 82 57.3
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 4.0e-16 89.0 148 39.2
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 1.2e-15 87.4 162 37.7
BcaB06g26385 Brassica carinata HOM05D003551 ORTHO05D016818 2.0e-15 86.7 57 80.7
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 3.4e-15 85.9 107 43.9
BcaB07g33803 Brassica carinata HOM05D003551 ORTHO05D032399 9.9e-15 84.3 57 78.9
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.3e-14 84.0 151 39.7
Medtr4g006000 Medicago truncatula HOM05D003551 ORTHO05D004869 9.3e-13 77.8 125 39.2
AUR62015661 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.8e-11 73.6 130 35.4
TPR.G18550 Trifolium pratense HOM05D003551 ORTHO05D004869 4.3e-10 68.9 121 33.9
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.6e-09 67.0 131 30.5
AagrBONN_evm.TU.Sc2ySwM_344.4679 Anthoceros agrestis HOM05D003551 ORTHO05D004869 1.8e-08 63.5 98 37.8
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 5.3e-08 62.0 113 38.1
PRCOL_00005223 Prasinoderma coloniale HOM05D003551 ORTHO05D004869 1.2e-07 60.8 136 30.1
HPP92_006854 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.5e-07 60.5 42 69.0
HPP92_006872 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.5e-07 60.5 42 69.0


User provided reference genes

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