Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19491 Brassica carinata HOM05D000003 ORTHO05D014527 1.1e-56 223.0 105 100.0
BcaB02g09394 Brassica carinata HOM05D000003 ORTHO05D000283 1.7e-33 146.0 89 74.2
BolC2t07536H Brassica oleracea HOM05D000003 ORTHO05D000283 5.2e-19 97.8 91 45.1
BraA07t28299Z Brassica rapa HOM05D000003 ORTHO05D000283 1.5e-18 96.3 91 44.0
AL1G56200 Arabidopsis lyrata HOM05D000003 ORTHO05D000283 2.2e-17 92.4 93 47.3
BolC2t07181H Brassica oleracea HOM05D000003 ORTHO05D000283 2.2e-17 92.4 88 45.5
C08p25100 Brassica napus HOM05D000003 ORTHO05D014527 2.8e-17 92.0 76 55.3
BolC8t50127H Brassica oleracea HOM05D000003 ORTHO05D014527 2.8e-17 92.0 76 55.3
BcaC06g32413 Brassica carinata HOM05D000008 ORTHO05D000005 6.3e-17 90.9 62 67.7
A02p04600 Brassica napus HOM05D000003 ORTHO05D000283 6.3e-17 90.9 91 49.5
BcaC06g35549 Brassica carinata HOM05D000003 ORTHO05D000283 1.4e-16 89.7 85 48.2
BcaC09g48789 Brassica carinata HOM05D000003 ORTHO05D000283 1.4e-16 89.7 85 48.2
BolC5t32204H Brassica oleracea HOM05D000003 ORTHO05D000283 3.1e-16 88.6 97 44.3
Carub.0005s0074 Capsella rubella HOM05D000003 ORTHO05D014527 3.1e-16 88.6 88 43.2
Carub.0005s1491 Capsella rubella HOM05D000003 ORTHO05D014527 4.1e-16 88.2 88 43.2
BcaB02g08653 Brassica carinata HOM05D000003 ORTHO05D000283 1.6e-15 86.3 91 47.3
AL1G41870 Arabidopsis lyrata HOM05D000003 ORTHO05D000283 2.7e-15 85.5 88 42.0
BcaB03g13757 Brassica carinata HOM05D000003 ORTHO05D000283 3.5e-15 85.1 91 45.1
BcaC06g36136 Brassica carinata HOM05D000003 ORTHO05D000283 4.5e-15 84.7 72 47.2
BolC7t44297H Brassica oleracea HOM05D000003 ORTHO05D014527 5.9e-15 84.3 91 38.5
BcaC02g11961 Brassica carinata HOM05D000003 ORTHO05D000283 1.3e-14 83.2 82 43.9
BraA02t06406Z Brassica rapa HOM05D000003 ORTHO05D014527 1.3e-14 83.2 89 38.2
BraA01t01398Z Brassica rapa HOM05D000003 ORTHO05D000283 2.2e-14 82.4 86 41.9
BcaC05g29848 Brassica carinata HOM05D000003 ORTHO05D000283 1.5e-13 79.7 72 45.8
BcaC08g44971 Brassica carinata HOM05D000003 ORTHO05D000004 1.5e-13 79.7 89 41.6
BraA09t38940Z Brassica rapa HOM05D000003 ORTHO05D000283 1.5e-13 79.7 87 41.4
BolC7t43339H Brassica oleracea HOM05D000003 ORTHO05D000283 1.9e-13 79.3 90 37.8
BolC1t03920H Brassica oleracea HOM05D000003 ORTHO05D000283 2.5e-13 79.0 90 41.1
BcaB04g19231 Brassica carinata HOM05D000003 ORTHO05D000283 4.2e-13 78.2 89 34.8
BcaC04g21145 Brassica carinata HOM05D000003 ORTHO05D000283 5.5e-13 77.8 88 40.9
BraA05t19177Z Brassica rapa HOM05D000003 ORTHO05D014527 5.5e-13 77.8 89 37.1
C08p07500 Brassica napus HOM05D000003 ORTHO05D000283 4.7e-12 74.7 90 34.4
BcaC09g50223 Brassica carinata HOM05D000003 ORTHO05D000283 2.3e-11 72.4 67 47.8
BolC4t25228H Brassica oleracea HOM05D000003 ORTHO05D000283 3.0e-11 72.0 90 36.7
BcaC03g17941 Brassica carinata HOM05D000003 ORTHO05D000283 4.0e-11 71.6 89 38.2
BolC7t42437H Brassica oleracea HOM05D001916 ORTHO05D000283 5.2e-11 71.2 90 33.3
BolC6t37177H Brassica oleracea HOM05D000003 ORTHO05D000283 6.8e-11 70.9 87 35.6
AL5G25040 Arabidopsis lyrata HOM05D000003 ORTHO05D011072 2.0e-10 69.3 86 39.5
BcaC06g35806 Brassica carinata HOM05D000003 ORTHO05D000283 2.0e-10 69.3 90 35.6
BraA01t02310Z Brassica rapa HOM05D012406 ORTHO05D011072 3.4e-10 68.6 85 36.5
BolC1t03134H Brassica oleracea HOM05D000003 ORTHO05D011072 5.7e-10 67.8 85 35.3
BolC8t48505H Brassica oleracea HOM05D000003 ORTHO05D014527 5.7e-10 67.8 68 45.6
BolC2t10036H Brassica oleracea HOM05D000003 ORTHO05D011072 7.5e-10 67.4 85 35.3
BolC3t19889H Brassica oleracea HOM05D000003 ORTHO05D014527 7.5e-10 67.4 68 42.6
AL3G45200 Arabidopsis lyrata HOM05D000003 ORTHO05D000283 1.7e-09 66.2 83 38.6
BcaC03g15593 Brassica carinata HOM05D000003 ORTHO05D000283 2.2e-09 65.9 66 45.5
BcaNung03504 Brassica carinata HOM05D000003 ORTHO05D027488 2.2e-09 65.9 88 37.5
BolC9t56590H Brassica oleracea HOM05D000003 ORTHO05D023861 2.8e-09 65.5 74 41.9
BraA09t37725Z Brassica rapa HOM05D000003 ORTHO05D011072 2.8e-09 65.5 67 46.3
Carub.0001s3394 Capsella rubella HOM05D000003 ORTHO05D000283 4.9e-09 64.7 84 35.7
BraA06t25249Z Brassica rapa HOM05D000003 ORTHO05D014527 6.3e-09 64.3 65 43.1
BolC1t04414H Brassica oleracea HOM05D000003 ORTHO05D000283 1.1e-08 63.5 95 35.8
BolC9t56388H Brassica oleracea HOM05D000003 ORTHO05D011072 1.1e-08 63.5 89 36.0
BraA09t37875Z Brassica rapa HOM05D000003 ORTHO05D000004 1.1e-08 63.5 85 38.8
BolC1t01970H Brassica oleracea HOM05D000003 ORTHO05D000283 1.4e-08 63.2 85 36.5
Sp2g02500 Schrenkiella parvula HOM05D000003 ORTHO05D000283 1.8e-08 62.8 68 36.8
BolC2t09832H Brassica oleracea HOM05D000003 ORTHO05D000283 2.4e-08 62.4 67 44.8
BolC9t54942H Brassica oleracea HOM05D000003 ORTHO05D000283 2.4e-08 62.4 85 36.5
AL5G25560 Arabidopsis lyrata HOM05D000003 ORTHO05D000283 3.1e-08 62.0 71 43.7
BcaC09g48611 Brassica carinata HOM05D000003 ORTHO05D000283 3.1e-08 62.0 59 40.7
BcaC09g49192 Brassica carinata HOM05D000003 ORTHO05D011072 4.1e-08 61.6 91 37.4
BolC1t04115H Brassica oleracea HOM05D000003 ORTHO05D011072 4.1e-08 61.6 91 37.4
BraA05t21220Z Brassica rapa HOM05D000003 ORTHO05D011072 4.1e-08 61.6 66 42.4
BcaB04g17106 Brassica carinata HOM05D038619 ORTHO05D011028 5.4e-08 61.2 64 46.9
C01p30650 Brassica napus HOM05D012406 ORTHO05D011072 5.4e-08 61.2 75 37.3
C09p20360 Brassica napus HOM05D000003 ORTHO05D000283 7.0e-08 60.8 85 35.3
BolC3t20242H Brassica oleracea HOM05D000003 ORTHO05D011072 9.2e-08 60.5 85 35.3
BolC4t24203H Brassica oleracea HOM05D000003 ORTHO05D011072 1.2e-07 60.1 83 32.5
BolC5t32500H Brassica oleracea HOM05D000003 ORTHO05D011072 1.6e-07 59.7 84 40.5
BolC6t37448H Brassica oleracea HOM05D000003 ORTHO05D011072 2.0e-07 59.3 77 40.3
BolC9t59539H Brassica oleracea HOM05D000003 ORTHO05D000283 2.0e-07 59.3 85 36.5
BcaC05g25052 Brassica carinata HOM05D000003 ORTHO05D000283 2.7e-07 58.9 67 46.3
C07p08580 Brassica napus HOM05D000003 ORTHO05D011072 2.7e-07 58.9 92 32.6
BraA05t21641Z Brassica rapa HOM05D000003 ORTHO05D014527 3.5e-07 58.5 73 37.0
BcaB01g01489 Brassica carinata HOM05D000003 ORTHO05D000283 7.7e-07 57.4 88 34.1
BolC8t48016H Brassica oleracea HOM05D033127 ORTHO05D033503 7.7e-07 57.4 72 37.5
BolC9t55722H Brassica oleracea HOM05D000003 ORTHO05D000283 7.7e-07 57.4 85 35.3
BraA05t22446Z Brassica rapa HOM05D000003 ORTHO05D000283 7.7e-07 57.4 95 32.6
Sp6g11620 Schrenkiella parvula HOM05D011239 ORTHO05D008901 7.7e-07 57.4 44 63.6
BcaC07g39515 Brassica carinata HOM05D000003 ORTHO05D000283 1.0e-06 57.0 90 31.1
BolC2t10942H Brassica oleracea HOM05D000003 ORTHO05D011072 1.0e-06 57.0 68 38.2
BolC4t22334H Brassica oleracea HOM05D000003 ORTHO05D011072 1.0e-06 57.0 84 33.3
BolC5t30919H Brassica oleracea HOM05D000003 ORTHO05D011072 1.0e-06 57.0 83 31.3
BolC5t31190H Brassica oleracea HOM05D000003 ORTHO05D000283 1.0e-06 57.0 52 42.3
BcaC06g33754 Brassica carinata HOM05D000003 ORTHO05D000283 1.7e-06 56.2 55 47.3
BolC5t32160H Brassica oleracea HOM05D000003 ORTHO05D000283 1.7e-06 56.2 85 35.3
BraA05t21410Z Brassica rapa HOM05D000003 ORTHO05D000283 1.7e-06 56.2 100 32.0
BolC1t01071H Brassica oleracea HOM05D000003 ORTHO05D000283 2.3e-06 55.8 98 28.6
BolC4t22241H Brassica oleracea HOM05D029651 ORTHO05D000283 2.3e-06 55.8 64 43.8
BolC9t56630H Brassica oleracea HOM05D000003 ORTHO05D000283 2.3e-06 55.8 62 38.7
A08p33390 Brassica napus HOM05D000003 ORTHO05D000283 2.9e-06 55.5 85 28.2
AL3G46190 Arabidopsis lyrata HOM05D000003 ORTHO05D000004 3.8e-06 55.1 79 31.6
BolC9t54936H Brassica oleracea HOM05D012406 ORTHO05D000283 3.8e-06 55.1 78 35.9
AL6G39210 Arabidopsis lyrata HOM05D000003 ORTHO05D000283 5.0e-06 54.7 99 29.3
BcaB02g08954 Brassica carinata HOM05D038619 ORTHO05D027479 5.0e-06 54.7 53 47.2
BcaB05g22928 Brassica carinata HOM05D000003 ORTHO05D000283 5.0e-06 54.7 98 32.7
BcaB06g29407 Brassica carinata HOM05D000003 ORTHO05D000283 5.0e-06 54.7 98 32.7
C08p43370 Brassica napus HOM05D000162 ORTHO05D000090 5.0e-06 54.7 57 38.6
BolC2t12335H Brassica oleracea HOM05D000003 ORTHO05D011072 5.0e-06 54.7 65 44.6
BolC4t24374H Brassica oleracea HOM05D000003 ORTHO05D011072 5.0e-06 54.7 67 40.3
BolC7t40895H Brassica oleracea HOM05D000003 ORTHO05D011072 5.0e-06 54.7 70 35.7
BolC8t51886H Brassica oleracea HOM05D000162 ORTHO05D000090 5.0e-06 54.7 57 38.6
BolC6t39459H Brassica oleracea HOM05D000003 ORTHO05D011072 6.6e-06 54.3 77 37.7
BcaC06g31176 Brassica carinata HOM05D038619 ORTHO05D011028 8.6e-06 53.9 61 44.3
BolC7t42244H Brassica oleracea HOM05D035924 ORTHO05D000283 8.6e-06 53.9 88 29.5


User provided reference genes

Program Settings