Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19478 Brassica carinata HOM05D005719 ORTHO05D007030 1.6e-138 496.1 258 100.0
BcaC06g30902 Brassica carinata HOM05D005719 ORTHO05D007030 1.0e-105 387.1 279 77.1
A06p40410 Brassica napus HOM05D005719 ORTHO05D007030 7.5e-104 380.9 282 75.2
BraA06t26959Z Brassica rapa HOM05D005719 ORTHO05D007030 7.5e-104 380.9 282 75.2
Thhalv10004086m.g Eutrema salsugineum HOM05D005719 ORTHO05D007030 2.0e-101 372.9 282 74.1
Sp2g17320 Schrenkiella parvula HOM05D005719 ORTHO05D007030 2.7e-101 372.5 276 74.3
BcaC06g33632 Brassica carinata HOM05D005719 ORTHO05D007030 1.5e-99 366.7 282 74.1
C07p37630 Brassica napus HOM05D005719 ORTHO05D007030 5.6e-99 364.8 282 73.8
BolC7t44279H Brassica oleracea HOM05D005719 ORTHO05D007030 5.6e-99 364.8 282 73.8
AL5G18300 Arabidopsis lyrata HOM05D005719 ORTHO05D007030 1.4e-94 350.1 283 67.8
AT3G28670 Arabidopsis thaliana HOM05D005719 ORTHO05D007030 9.2e-94 347.4 284 66.9
CARHR286650 Cardamine hirsuta HOM05D005719 ORTHO05D007030 4.6e-93 345.1 285 67.7
Carub.0005s0719 Capsella rubella HOM05D005719 ORTHO05D007030 1.5e-91 340.1 277 67.1
Aa31LG2G4530 Aethionema arabicum HOM05D005719 ORTHO05D007030 5.2e-81 305.1 281 64.1
THA.LOC104823811 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 2.5e-67 259.6 278 56.1
THA.LOC104805699 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 1.6e-66 256.9 278 54.3
Ciclev10000979m.g Citrus clementina HOM05D005719 ORTHO05D007030 5.8e-56 221.9 278 47.8
Manes.05G187400 Manihot esculenta HOM05D005719 ORTHO05D007030 1.3e-55 220.7 280 46.8
Thecc.08G076500 Theobroma cacao HOM05D005719 ORTHO05D007030 1.3e-55 220.7 280 49.6
QL12p040011 Quercus lobata HOM05D005719 ORTHO05D007030 2.2e-55 219.9 280 48.6
Duzib093G1837 Durio zibethinus HOM05D005719 ORTHO05D007030 1.9e-54 216.9 280 47.9
Cfa013832 Carpinus fangiana HOM05D000446 ORTHO05D000321 4.2e-54 215.7 279 48.0
Gohir.A05G217800 Gossypium hirsutum HOM05D005719 ORTHO05D007030 5.5e-54 215.3 279 45.5
Gorai.009G226700 Gossypium raimondii HOM05D005719 ORTHO05D007030 5.5e-54 215.3 279 45.9
Duzib041G0544 Durio zibethinus HOM05D005719 ORTHO05D007030 1.2e-53 214.2 280 46.4
Gohir.D05G219700 Gossypium hirsutum HOM05D005719 ORTHO05D007030 1.2e-53 214.2 279 46.2
Atru.chr13.942 Acer truncatum HOM05D005719 ORTHO05D007030 1.6e-53 213.8 279 47.7
CiPaw.07G161600 Carya illinoinensis HOM05D005719 ORTHO05D007030 1.6e-53 213.8 267 48.7
CiPaw.08G058000 Carya illinoinensis HOM05D005719 ORTHO05D007030 1.0e-52 211.1 272 48.5
Manes.18G055200 Manihot esculenta HOM05D005719 ORTHO05D007030 1.0e-52 211.1 280 45.0
TWI56G1147 Tripterygium wilfordii HOM05D005719 ORTHO05D007030 5.1e-52 208.8 276 46.0
MD08G1208600 Malus domestica HOM05D005719 ORTHO05D007030 6.7e-52 208.4 290 45.2
Prupe.1G540100 Prunus persica HOM05D005719 ORTHO05D007030 6.7e-52 208.4 290 45.2
MD15G1392600 Malus domestica HOM05D005719 ORTHO05D007030 1.1e-51 207.6 290 44.1
RcHm_v2.0_Chr7g0233191 Rosa chinensis HOM05D005719 ORTHO05D007030 4.8e-50 202.2 294 44.6
Sabra02G0085500 Salix brachista HOM05D005719 ORTHO05D007030 4.8e-50 202.2 282 43.6
Haze_22505 Corylus avellana HOM05D005719 ORTHO05D007030 2.4e-49 199.9 307 42.3
CANSAT21G2028 Cannabis sativa HOM05D005719 ORTHO05D007030 6.9e-49 198.4 283 42.0
GSVIVG01009231001 Vitis vinifera HOM05D005719 ORTHO05D007030 1.5e-48 197.2 228 49.6
Actinidia19605 Actinidia chinensis HOM05D005719 ORTHO05D007030 2.6e-48 196.4 283 43.1
TAR628G1450 Trochodendron aralioides HOM05D005719 ORTHO05D007030 2.6e-48 196.4 283 42.4
PGR031G2819 Punica granatum HOM05D005719 ORTHO05D007030 1.0e-47 194.5 270 42.2
arahy.Tifrunner.gnm1.ann1.SLT0HR Arachis hypogaea HOM05D005719 ORTHO05D007030 3.8e-47 192.6 281 40.9
PSO761G0268 Papaver somniferum HOM05D005719 ORTHO05D007030 1.4e-46 190.7 236 47.0
Psat5g018640 Pisum sativum HOM05D005719 ORTHO05D007030 4.2e-46 189.1 282 41.1
FvH4_5g33860 Fragaria vesca HOM05D005719 ORTHO05D007030 7.2e-46 188.3 290 41.7
PSO700G0171 Papaver somniferum HOM05D005719 ORTHO05D007030 1.2e-45 187.6 236 46.2
arahy.Tifrunner.gnm1.ann1.I1WLRD Arachis hypogaea HOM05D005719 ORTHO05D007030 2.1e-45 186.8 281 39.5
Medtr3g111330 Medicago truncatula HOM05D005719 ORTHO05D007030 2.7e-45 186.4 282 41.1
vmacro04622 Vaccinium macrocarpon HOM05D005719 ORTHO05D007030 3.5e-45 186.0 283 42.8
TPR.G12418 Trifolium pratense HOM05D005719 ORTHO05D007030 7.9e-45 184.9 279 40.9
Glyma.06G092200 Glycine max HOM05D005719 ORTHO05D007030 1.0e-44 184.5 282 41.5
Lj1g0010479 Lotus japonicus HOM05D005719 ORTHO05D007030 1.8e-44 183.7 285 40.0
TAR381G0820 Trochodendron aralioides HOM05D005719 ORTHO05D007030 3.0e-44 183.0 236 46.6
Lalb_Chr11g0064791 Lupinus albus HOM05D005719 ORTHO05D007030 3.9e-44 182.6 277 41.5
Eucgr.F02170 Eucalyptus grandis HOM05D005719 ORTHO05D007030 6.7e-44 181.8 280 42.1
MBI16_g44752_MAGBIO Magnolia biondii HOM05D005719 ORTHO05D007030 8.7e-44 181.4 239 44.8
Cpa.g.sc177.3 Carica papaya HOM05D005719 ORTHO05D007030 3.3e-43 179.5 200 54.0
Hma1.2p1_0010F.1_g006360 Hydrangea macrophylla HOM05D005719 ORTHO05D007030 4.3e-43 179.1 275 41.5
HanXRQChr03g0065451 Helianthus annuus HOM05D005719 ORTHO05D007030 7.4e-43 178.3 280 40.4
Ca_15541_v3 Cicer arietinum L. HOM05D005719 ORTHO05D007030 1.3e-42 177.6 281 39.1
Migut.C00296 Erythranthe guttata HOM05D005719 ORTHO05D007030 1.3e-42 177.6 283 39.9
TPR.G21947 Trifolium pratense HOM05D005719 ORTHO05D007030 1.6e-42 177.2 282 39.4
VMungo1309G0989 Vigna mungo HOM05D005719 ORTHO05D007030 2.2e-42 176.8 279 40.5
CSS0009932 Camellia sinensis var. sinensis HOM05D005719 ORTHO05D007030 2.8e-42 176.4 289 40.5
Glyma.04G090400 Glycine max HOM05D005719 ORTHO05D007030 2.4e-41 173.3 282 40.8
Phvul.009G145500 Phaseolus vulgaris HOM05D005719 ORTHO05D007030 2.4e-41 173.3 281 38.8
Sed0009724 Sechium edule HOM05D005719 ORTHO05D007030 3.4e-40 169.5 219 47.0
ClCG11G014800 Citrullus lanatus HOM05D005719 ORTHO05D007030 4.5e-40 169.1 273 41.0
Sc02g0008400 Simmondsia chinensis HOM05D005719 ORTHO05D007030 5.9e-40 168.7 284 41.9
CsaV3_3G048210 Cucumis sativus L. HOM05D005719 ORTHO05D007030 1.0e-39 167.9 273 40.7
COL.COLO4_35322 Corchorus olitorius HOM05D005719 ORTHO05D007030 1.7e-39 167.2 264 43.2
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 2.9e-39 166.4 275 40.4
ECA240G4523 Erigeron canadensis HOM05D005719 ORTHO05D007030 5.0e-39 165.6 283 40.3
Lsat_1_v5_gn_7_55820 Lactuca sativa HOM05D005719 ORTHO05D007030 8.5e-39 164.9 288 39.6
Nn1g05685 Nelumbo nucifera HOM05D005719 ORTHO05D007030 4.2e-38 162.5 245 42.9
AUR62035705 Chenopodium quinoa HOM05D005719 ORTHO05D007030 1.6e-37 160.6 284 38.0
HPP92_028121 Vanilla planifolia HOM05D005719 ORTHO05D007030 2.7e-37 159.8 273 35.9
Hund05222 Selenicereus undatus HOM05D005719 ORTHO05D007030 7.9e-37 158.3 280 38.6
HPP92_020868 Vanilla planifolia HOM05D005719 ORTHO05D007030 1.0e-36 157.9 273 35.2
Nitab4.5_0001608g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 1.4e-36 157.5 276 38.4
Solyc02g014380.3 Solanum lycopersicum HOM05D005719 ORTHO05D007030 1.8e-36 157.1 286 37.4
Oeu035376.1 Olea europaea HOM05D005719 ORTHO05D007030 2.3e-36 156.8 266 38.0
Cc10_g08220 Coffea canephora HOM05D005719 ORTHO05D007030 3.9e-36 156.0 285 35.8
Sopen02g003330 Solanum pennellii HOM05D005719 ORTHO05D007030 5.1e-36 155.6 286 37.4
PGSC0003DMG400019103 Solanum tuberosum HOM05D005719 ORTHO05D007030 5.1e-36 155.6 286 37.8
PGSC0003DMG400019007 Solanum tuberosum HOM05D005719 ORTHO05D007030 1.1e-35 154.5 288 37.2
TAR381G0292 Trochodendron aralioides HOM05D005719 ORTHO05D007030 1.1e-35 154.5 235 44.7
CDE07G0720 Ceratophyllum demersum HOM05D005719 ORTHO05D007030 1.5e-35 154.1 255 37.3
MSTRG.25002 Avicennia marina HOM05D005719 ORTHO05D007030 7.4e-35 151.8 280 38.2
Dinv44886 Davidia involucrata HOM05D005719 ORTHO05D007030 2.8e-34 149.8 189 46.0
FAN08G1402 Fragaria x ananassa HOM05D005719 ORTHO05D007030 6.3e-34 148.7 208 41.8
SGA_v2.0_scaffold14G07072 Striga asiatica HOM05D005719 ORTHO05D007030 8.2e-34 148.3 286 37.8
Ah.00g000110 Amaranthus hybridus HOM05D005719 ORTHO05D007030 6.9e-33 145.2 280 37.9
EL10Ac1g02246 Beta vulgaris HOM05D005719 ORTHO05D007030 6.9e-33 145.2 282 35.8
SalBow7G1913 Salvia bowleyana HOM05D005719 ORTHO05D007030 2.0e-32 143.7 188 44.7
FAN18G0583 Fragaria x ananassa HOM05D005719 ORTHO05D007030 4.5e-32 142.5 228 38.6
unitig_749.g13864 Utricularia gibba HOM05D005719 ORTHO05D000442 1.3e-31 141.0 283 34.3
CAN.G1921.11 Capsicum annuum HOM05D005719 ORTHO05D007030 4.2e-30 136.0 278 33.5
CAN.G1751.8 Capsicum annuum HOM05D005719 ORTHO05D007030 1.6e-29 134.0 214 37.9
ATR0144G003 Amborella trichopoda HOM05D005719 ORTHO05D007030 1.4e-28 131.0 239 38.9
Os08g0101400 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 1.4e-28 131.0 259 35.1
Actinidia29649 Actinidia chinensis HOM05D005719 ORTHO05D007030 2.0e-24 117.1 175 41.7
Nitab4.5_0000681g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 8.5e-23 111.7 261 36.0
Rhsim07G0214600 Rhododendron simsii HOM05D005719 ORTHO05D007030 1.1e-22 111.3 124 47.6
AUR62035419 Chenopodium quinoa HOM05D005719 ORTHO05D007030 3.3e-19 99.8 126 44.4
Peaxi162Scf01397g00011 Petunia axillaris HOM05D005719 ORTHO05D007030 7.5e-19 98.6 130 43.1
MELO3C003498.2 Cucumis melo HOM05D005719 ORTHO05D007030 1.4e-17 94.4 120 45.0
Oeu035375.1 Olea europaea HOM05D005719 ORTHO05D007030 2.4e-17 93.6 169 37.3
Pp3c26_6510 Physcomitrium patens HOM05D005719 ORTHO05D007030 2.4e-17 93.6 278 27.3
Mapoly0053s0027 Marchantia polymorpha HOM05D005719 ORTHO05D007030 1.6e-16 90.9 204 32.4
AagrBONN_evm.TU.Sc2ySwM_369.438 Anthoceros agrestis HOM05D005719 ORTHO05D007030 7.7e-16 88.6 293 26.6
Peaxi162Scf01397g00010 Petunia axillaris HOM05D005719 ORTHO05D007030 2.6e-11 73.6 129 38.0
SMO118G0237 Selaginella moellendorffii HOM05D005719 ORTHO05D007030 3.7e-10 69.7 189 30.2
HanXRQChr16g0499811 Helianthus annuus HOM05D005719 ORTHO05D007030 7.7e-08 62.0 135 36.3
Lju279A4T8 Lonicera japonica HOM05D005719 ORTHO05D007030 3.8e-07 59.7 72 44.4


User provided reference genes

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