Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19399 Brassica carinata HOM05D001245 ORTHO05D004475 9.1e-256 886.3 428 100.0
C06p51480 Brassica napus HOM05D001245 ORTHO05D004475 2.5e-181 639.0 502 68.5
BcaC08g47618 Brassica carinata HOM05D001245 ORTHO05D004475 1.3e-180 636.7 502 68.7
A07p42860 Brassica napus HOM05D001245 ORTHO05D004475 4.8e-180 634.8 506 68.4
BolC6t40166H Brassica oleracea HOM05D001245 ORTHO05D004475 4.8e-180 634.8 502 68.7
Sp5g32500 Schrenkiella parvula HOM05D001245 ORTHO05D004475 1.8e-179 632.9 506 67.6
BraA07t31807Z Brassica rapa HOM05D001245 ORTHO05D004475 1.4e-176 623.2 532 65.2
Thhalv10018076m.g Eutrema salsugineum HOM05D001245 ORTHO05D004475 7.7e-162 574.3 507 62.7
CARHR070810 Cardamine hirsuta HOM05D001245 ORTHO05D004475 6.3e-156 554.7 498 61.0
AL2G37520 Arabidopsis lyrata HOM05D001245 ORTHO05D004475 5.7e-149 531.6 504 60.1
AT1G77320 Arabidopsis thaliana HOM05D001245 ORTHO05D004475 3.1e-147 525.8 504 59.3
Carub.0002s2420 Capsella rubella HOM05D001245 ORTHO05D004475 1.2e-146 523.9 503 58.8
Aa31LG4G7350 Aethionema arabicum HOM05D001245 ORTHO05D004475 1.5e-128 463.8 494 53.6
THA.LOC104810225 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 5.6e-128 461.8 495 54.3
THA.LOC104800232 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 1.5e-125 453.8 495 53.7
GSVIVG01008809001 Vitis vinifera HOM05D001245 ORTHO05D004475 2.3e-97 360.1 443 46.7
Thecc.08G132800 Theobroma cacao HOM05D001245 ORTHO05D004475 1.9e-96 357.1 435 47.6
CiPaw.16G022900 Carya illinoinensis HOM05D001245 ORTHO05D004475 3.6e-95 352.8 473 45.5
Cpa.g.sc64.150 Carica papaya HOM05D001245 ORTHO05D004475 1.1e-94 351.3 451 47.0
RcHm_v2.0_Chr6g0296681 Rosa chinensis HOM05D001245 ORTHO05D004475 3.1e-94 349.7 498 43.2
Prupe.1G489800 Prunus persica HOM05D001245 ORTHO05D004475 9.0e-94 348.2 510 43.7
Cfa018127 Carpinus fangiana HOM05D001245 ORTHO05D004475 1.7e-92 344.0 450 45.6
TWI34G1866 Tripterygium wilfordii HOM05D001245 ORTHO05D004475 3.8e-92 342.8 413 48.9
Actinidia03424 Actinidia chinensis HOM05D001245 ORTHO05D004475 6.4e-92 342.0 413 47.0
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 1.1e-91 341.3 472 44.3
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 1.6e-90 337.4 491 42.0
Potri.005G182500 Populus trichocarpa HOM05D001245 ORTHO05D004475 1.6e-90 337.4 427 45.9
Atru.chr13.1560 Acer truncatum HOM05D001245 ORTHO05D004475 3.5e-90 336.3 444 45.9
Gohir.A02G110400 Gossypium hirsutum HOM05D001245 ORTHO05D004475 3.5e-90 336.3 441 46.0
Sabra05G0138300 Salix brachista HOM05D001245 ORTHO05D004475 3.5e-90 336.3 420 46.2
Gorai.013G107700 Gossypium raimondii HOM05D001245 ORTHO05D004475 1.0e-89 334.7 441 45.6
Gohir.D03G069003 Gossypium hirsutum HOM05D001245 ORTHO05D004475 5.1e-89 332.4 441 45.1
Sed0010713 Sechium edule HOM05D001245 ORTHO05D004475 8.7e-89 331.6 465 42.8
FvH4_2g27821 Fragaria vesca HOM05D001245 ORTHO05D004475 1.1e-88 331.3 496 42.9
Lalb_Chr17g0343591 Lupinus albus HOM05D001245 ORTHO05D004475 1.9e-88 330.5 440 44.8
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 7.3e-88 328.6 414 47.3
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 1.6e-87 327.4 482 43.4
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 2.8e-87 326.6 476 42.6
Sopen01g030190 Solanum pennellii HOM05D001245 ORTHO05D004475 1.8e-86 323.9 449 42.8
Eucgr.F03841 Eucalyptus grandis HOM05D001245 ORTHO05D004475 2.4e-86 323.6 430 45.3
MD08G1159000 Malus domestica HOM05D001245 ORTHO05D004475 3.1e-86 323.2 436 44.5
Solyc01g068260.4 Solanum lycopersicum HOM05D001245 ORTHO05D004475 3.1e-86 323.2 449 43.2
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 9.0e-86 321.6 506 40.9
arahy.Tifrunner.gnm1.ann1.69Q1HU Arachis hypogaea HOM05D001245 ORTHO05D004475 1.5e-85 320.9 409 45.0
ClCG11G015970 Citrullus lanatus HOM05D001245 ORTHO05D004475 2.0e-85 320.5 464 42.7
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 2.6e-85 320.1 474 42.6
arahy.Tifrunner.gnm1.ann1.TXAW3L Arachis hypogaea HOM05D001245 ORTHO05D004475 3.4e-85 319.7 440 42.7
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 3.4e-85 319.7 437 43.7
COL.COLO4_08845 Corchorus olitorius HOM05D001245 ORTHO05D004475 9.9e-85 318.2 488 40.2
Cc02_g29380 Coffea canephora HOM05D001245 ORTHO05D004475 4.9e-84 315.8 450 43.6
Nitab4.5_0000316g0190 Nicotiana tabacum HOM05D001245 ORTHO05D004475 1.4e-83 314.3 424 42.7
Nn1g08963 Nelumbo nucifera HOM05D001245 ORTHO05D004475 1.9e-83 313.9 504 39.9
Nitab4.5_0001543g0060 Nicotiana tabacum HOM05D001245 ORTHO05D004475 1.9e-83 313.9 421 42.5
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 7.1e-83 312.0 425 43.8
Phvul.001G070600 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 1.2e-82 311.2 411 44.3
MBI06_g35213_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D004475 1.6e-82 310.8 486 40.7
CAN.G410.39 Capsicum annuum HOM05D001245 ORTHO05D004475 2.7e-82 310.1 443 42.2
AUR62007718 Chenopodium quinoa HOM05D001245 ORTHO05D004475 2.7e-82 310.1 468 40.8
AUR62013424 Chenopodium quinoa HOM05D001245 ORTHO05D004475 7.9e-82 308.5 467 40.9
Oeu009633.1 Olea europaea HOM05D001245 ORTHO05D004475 7.9e-82 308.5 408 47.1
FAN27G0075 Fragaria x ananassa HOM05D001245 ORTHO05D005230 5.1e-81 305.8 440 42.7
Phvul.002G078200 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 1.3e-79 301.2 433 42.5
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 3.7e-79 299.7 502 36.9
VMungo0647G1057 Vigna mungo HOM05D001245 ORTHO05D004475 4.8e-79 299.3 441 42.0
FAN24G2504 Fragaria x ananassa HOM05D001245 ORTHO05D005230 6.2e-79 298.9 482 40.9
PSO170G6194 Papaver somniferum HOM05D001245 ORTHO05D004475 6.2e-79 298.9 451 41.2
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 1.4e-78 297.7 476 40.8
FAN15G0291 Fragaria x ananassa HOM05D001245 ORTHO05D005230 1.4e-78 297.7 480 41.0
Peaxi162Scf00087g00021 Petunia axillaris HOM05D001245 ORTHO05D004475 1.8e-78 297.4 441 41.0
PSO528G0248 Papaver somniferum HOM05D001245 ORTHO05D004475 9.0e-78 295.0 451 41.0
HanXRQChr02g0040561 Helianthus annuus HOM05D001245 ORTHO05D004475 1.5e-77 294.3 430 41.4
FAN20G0097 Fragaria x ananassa HOM05D001245 ORTHO05D004475 2.0e-77 293.9 477 40.7
Migut.N01819 Erythranthe guttata HOM05D001245 ORTHO05D004475 2.9e-76 290.0 496 38.5
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 1.4e-75 287.7 593 34.6
ECA233G0473 Erigeron canadensis HOM05D001245 ORTHO05D004475 2.5e-75 287.0 413 43.1
Hund26774 Selenicereus undatus HOM05D001245 ORTHO05D004475 2.1e-74 283.9 384 42.4
Sc26g0002960 Simmondsia chinensis HOM05D001245 ORTHO05D004475 7.9e-74 282.0 354 46.9
EL10Ac1g01344 Beta vulgaris HOM05D001245 ORTHO05D004475 2.3e-73 280.4 475 39.6
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 1.5e-72 277.7 407 42.3
MELO3C010511.2 Cucumis melo HOM05D001245 ORTHO05D004475 7.4e-72 275.4 440 40.0
vmacro10605 Vaccinium macrocarpon HOM05D001245 ORTHO05D004475 1.6e-71 274.2 559 35.1
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 3.1e-70 270.0 416 42.3
CsaV3_4G028030 Cucumis sativus L. HOM05D001245 ORTHO05D004475 6.9e-70 268.9 351 45.0
Lsat_1_v5_gn_1_6740 Lactuca sativa HOM05D001245 ORTHO05D004475 6.5e-68 262.3 454 37.7
SalBow6G4599 Salvia bowleyana HOM05D001245 ORTHO05D004475 3.2e-67 260.0 497 36.2
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 4.2e-67 259.6 540 33.3
ATR0561G228 Amborella trichopoda HOM05D001245 ORTHO05D004475 7.4e-64 248.8 447 35.3
SHI09212 Sapria himalayana HOM05D000105 ORTHO05D000023 9.0e-62 241.9 383 40.2
TAR229G0002 Trochodendron aralioides HOM05D001245 ORTHO05D004475 1.3e-60 238.0 401 40.9
Ca_12648_v3 Cicer arietinum L. HOM05D001245 ORTHO05D005230 2.5e-59 233.8 276 46.7
CDE02G2376 Ceratophyllum demersum HOM05D001245 ORTHO05D004475 5.5e-59 232.6 338 42.6
Ah.05g169150 Amaranthus hybridus HOM05D001245 ORTHO05D004475 8.8e-57 225.3 420 35.0
unitig_21.g20280 Utricularia gibba HOM05D001245 ORTHO05D004475 1.4e-54 218.0 448 35.5
DCAR_003586 Daucus carota HOM05D001245 ORTHO05D005230 3.1e-54 216.9 229 48.0
Dinv14684 Davidia involucrata HOM05D001245 ORTHO05D004475 3.1e-54 216.9 223 50.7
Zm00001eb091010 Zea mays HOM05D001245 ORTHO05D004475 2.5e-51 207.2 488 32.6
HPP92_027721 Vanilla planifolia HOM05D001245 ORTHO05D004475 6.1e-50 202.6 309 39.8
SEGI_34477 Sequoiadendron giganteum HOM05D001245 ORTHO05D004475 2.9e-44 183.7 205 46.8
CsaV3_UNG113870 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.5e-43 181.4 163 53.4
Hma1.2p1_1887F.1_g306530 Hydrangea macrophylla HOM05D001245 ORTHO05D004475 1.2e-42 178.3 359 35.1
Mapoly0158s0032 Marchantia polymorpha HOM05D001245 ORTHO05D004475 2.0e-40 171.0 249 39.0
Lj4C682G10 Lonicera japonica HOM05D001245 ORTHO05D004475 2.8e-39 167.2 379 33.0
Duzib093G0162 Durio zibethinus HOM05D001245 ORTHO05D004475 4.8e-39 166.4 426 32.2
CsaV3_UNG142080 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.5e-35 154.8 147 49.0
CsaV3_4G038030 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.9e-35 154.5 146 49.3
CsaV3_UNG169310 Cucumis sativus L. HOM05D001245 ORTHO05D004475 4.0e-33 146.7 346 31.8
Hma1.2p1_0014F.1_g010190 Hydrangea macrophylla HOM05D001245 ORTHO05D004475 1.5e-32 144.8 359 32.3
CsaV3_2G000040 Cucumis sativus L. HOM05D001245 ORTHO05D004475 5.7e-32 142.9 154 45.5
Pp3c3_700 Physcomitrium patens HOM05D001245 ORTHO05D004475 1.4e-30 138.3 196 38.8
SEGI_12378 Sequoiadendron giganteum HOM05D001245 ORTHO05D004475 1.4e-30 138.3 150 47.3
SMO269G0035 Selaginella moellendorffii HOM05D001245 ORTHO05D004475 1.0e-28 132.1 420 28.6
Dinv14683 Davidia involucrata HOM05D001245 ORTHO05D004475 3.2e-27 127.1 116 59.5
CsaV3_UNG123970 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.0e-25 122.1 98 55.1
CsaV3_UNG178370 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.3e-25 120.9 97 54.6
CsaV3_UNG098730 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.0e-25 120.6 97 54.6
CsaV3_UNG070580 Cucumis sativus L. HOM05D001245 ORTHO05D004475 6.8e-25 119.4 97 54.6
CsaV3_UNG082660 Cucumis sativus L. HOM05D001245 ORTHO05D004475 6.8e-25 119.4 97 54.6
CBR_g37446 Chara braunii HOM05D001245 ORTHO05D004475 1.6e-21 108.2 245 30.6
Rhsim11G0071500 Rhododendron simsii HOM05D001245 ORTHO05D004475 2.3e-20 104.4 433 27.3
CsaV3_5G019970 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.5e-16 91.7 63 58.7
BolC2t09478H Brassica oleracea HOM05D001245 ORTHO05D004475 9.8e-16 89.0 55 85.5
Duzib116G0160 Durio zibethinus HOM05D001245 ORTHO05D004475 1.2e-13 82.0 81 55.6
C02p34480 Brassica napus HOM05D001245 ORTHO05D004475 8.6e-12 75.9 47 85.1
Cre12.g515900 Chlamydomonas reinhardtii HOM05D001245 ORTHO05D004475 4.0e-09 67.0 134 33.6
MCO14G357 Micromonas commoda HOM05D001245 ORTHO05D004475 6.8e-09 66.2 125 29.6
SHI09213 Sapria himalayana HOM05D001245 ORTHO05D004475 1.5e-08 65.1 62 56.5
Haze_05021 Corylus avellana HOM05D004995 ORTHO05D006034 4.4e-08 63.5 120 31.7
Haze_05025 Corylus avellana HOM05D004995 ORTHO05D006034 3.7e-07 60.5 106 32.1
Os03g0304400 Oryza sativa ssp. japonica HOM05D004995 ORTHO05D006034 4.1e-06 57.0 124 28.2


User provided reference genes

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