Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19325 Brassica carinata HOM05D000329 ORTHO05D005330 6.4e-76 287.3 146 100.0
BcaC05g29938 Brassica carinata HOM05D000329 ORTHO05D005330 2.1e-55 219.2 174 69.5
C05p62760 Brassica napus HOM05D000329 ORTHO05D005330 2.1e-55 219.2 174 69.5
BolC5t34929H Brassica oleracea HOM05D000329 ORTHO05D005330 2.1e-55 219.2 174 69.5
BraA05t23043Z Brassica rapa HOM05D000329 ORTHO05D005330 2.1e-55 219.2 174 69.5
BcaC05g30221 Brassica carinata HOM05D000329 ORTHO05D005330 4.8e-55 218.0 174 69.0
A05p42990 Brassica napus HOM05D000329 ORTHO05D005330 1.1e-54 216.9 174 69.0
BcaC05g30194 Brassica carinata HOM05D000329 ORTHO05D005330 3.1e-54 215.3 174 68.4
Sp3g03340 Schrenkiella parvula HOM05D000329 ORTHO05D005330 9.0e-54 213.8 174 67.8
AT3G04490 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 4.5e-53 211.5 174 66.7
Carub.0003s0365 Capsella rubella HOM05D000329 ORTHO05D005330 4.5e-53 211.5 174 66.7
AL3G14470 Arabidopsis lyrata HOM05D000329 ORTHO05D005330 4.9e-52 208.0 174 65.5
Thhalv10019943m.g Eutrema salsugineum HOM05D000329 ORTHO05D005330 1.1e-51 206.8 174 66.1
CARHR078650 Cardamine hirsuta HOM05D000329 ORTHO05D005330 2.4e-51 205.7 174 66.1
Aa31LG5G14930 Aethionema arabicum HOM05D000329 ORTHO05D005330 1.5e-45 186.4 174 59.2
THA.LOC104827286 Tarenaya hassleriana HOM05D000329 ORTHO05D005330 2.9e-44 182.2 174 59.2
Actinidia39997 Actinidia chinensis HOM05D000329 ORTHO05D005330 3.3e-40 168.7 174 53.4
TPR.G6911 Trifolium pratense HOM05D000329 ORTHO05D005330 3.3e-40 168.7 174 52.3
Ciclev10018568m.g Citrus clementina HOM05D000329 ORTHO05D005330 4.3e-40 168.3 174 54.0
TWI56G0006 Tripterygium wilfordii HOM05D000329 ORTHO05D005330 4.3e-40 168.3 174 54.6
Cfa006349 Carpinus fangiana HOM05D000329 ORTHO05D005330 5.7e-40 167.9 174 53.4
Haze_04433 Corylus avellana HOM05D000329 ORTHO05D005330 7.4e-40 167.5 174 53.4
Ca_09463_v3 Cicer arietinum L. HOM05D000329 ORTHO05D005330 1.3e-39 166.8 174 51.7
Glyma.19G248400 Glycine max HOM05D000329 ORTHO05D005330 1.6e-39 166.4 174 51.7
Atru.chr2.977 Acer truncatum HOM05D000329 ORTHO05D005330 2.2e-39 166.0 174 52.9
Cpa.g.sc162.46 Carica papaya HOM05D000329 ORTHO05D005330 2.2e-39 166.0 174 54.0
Eucgr.H04230 Eucalyptus grandis HOM05D000329 ORTHO05D005330 4.8e-39 164.9 174 51.1
Glyma.03G251100 Glycine max HOM05D000329 ORTHO05D005330 4.8e-39 164.9 174 51.1
QL03p030502 Quercus lobata HOM05D000329 ORTHO05D005330 6.3e-39 164.5 174 52.9
Manes.09G147900 Manihot esculenta HOM05D000329 ORTHO05D005330 8.2e-39 164.1 174 52.9
Lj2C42G9 Lonicera japonica HOM05D000329 ORTHO05D005330 1.8e-38 162.9 174 52.3
Duzib106G0267 Durio zibethinus HOM05D000329 ORTHO05D005330 3.1e-38 162.2 170 52.4
Thecc.05G271000 Theobroma cacao HOM05D000329 ORTHO05D005330 3.1e-38 162.2 170 52.4
Lj1g0020261 Lotus japonicus HOM05D000329 ORTHO05D005330 5.3e-38 161.4 174 51.7
SGA_v2.0_scaffold50G18503 Striga asiatica HOM05D000329 ORTHO05D005330 5.3e-38 161.4 174 51.7
COL.COLO4_15478 Corchorus olitorius HOM05D000329 ORTHO05D005330 9.0e-38 160.6 169 53.3
SalBow6G5354 Salvia bowleyana HOM05D000329 ORTHO05D005330 1.2e-37 160.2 174 48.3
Prupe.7G018700 Prunus persica HOM05D000329 ORTHO05D005330 2.0e-37 159.5 174 50.6
Gohir.A08G217300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 3.4e-37 158.7 168 50.6
Lalb_Chr18g0044041 Lupinus albus HOM05D000329 ORTHO05D005330 3.4e-37 158.7 174 50.6
arahy.Tifrunner.gnm1.ann1.LXR25M Arachis hypogaea HOM05D000329 ORTHO05D005330 4.5e-37 158.3 174 50.6
PGR004G1157 Punica granatum HOM05D000329 ORTHO05D005330 4.5e-37 158.3 174 48.9
VMungo0540G0180 Vigna mungo HOM05D000329 ORTHO05D005330 4.5e-37 158.3 174 50.6
Duzib177G0982 Durio zibethinus HOM05D000329 ORTHO05D005330 5.9e-37 157.9 170 51.2
EL10Ac4g09016 Beta vulgaris HOM05D000329 ORTHO05D005330 1.3e-36 156.8 174 50.6
Gohir.D08G234300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 1.7e-36 156.4 168 50.0
Gorai.004G249100 Gossypium raimondii HOM05D000329 ORTHO05D005330 1.7e-36 156.4 168 50.0
Oeu014525.1 Olea europaea HOM05D000329 ORTHO05D005330 2.9e-36 155.6 174 49.4
Nn1g02807 Nelumbo nucifera HOM05D000329 ORTHO05D005330 3.8e-36 155.2 174 50.0
GSVIVG01023507001 Vitis vinifera HOM05D000329 ORTHO05D005330 5.0e-36 154.8 174 49.4
PSO017G0764 Papaver somniferum HOM05D000329 ORTHO05D005330 6.5e-36 154.5 174 50.6
Phvul.006G105600 Phaseolus vulgaris HOM05D000329 ORTHO05D005330 6.5e-36 154.5 174 50.0
CANSAT54G2567 Cannabis sativa HOM05D000329 ORTHO05D005330 8.5e-36 154.1 164 49.4
TAR636G0200 Trochodendron aralioides HOM05D000329 ORTHO05D005330 8.5e-36 154.1 174 48.3
Potri.019G019100 Populus trichocarpa HOM05D000329 ORTHO05D005330 1.1e-35 153.7 174 49.4
AUR62004837 Chenopodium quinoa HOM05D000329 ORTHO05D005330 1.9e-35 152.9 175 50.3
MD04G1230100 Malus domestica HOM05D000329 ORTHO05D005330 1.9e-35 152.9 174 49.4
PSO063G2047 Papaver somniferum HOM05D000329 ORTHO05D005330 1.9e-35 152.9 174 50.0
FAN05G0322 Fragaria x ananassa HOM05D000329 ORTHO05D005330 4.2e-35 151.8 174 47.1
FvH4_6g01900 Fragaria vesca HOM05D000329 ORTHO05D005330 7.2e-35 151.0 174 47.1
FAN09G2051 Fragaria x ananassa HOM05D000329 ORTHO05D005330 7.2e-35 151.0 174 47.1
FAN14G2464 Fragaria x ananassa HOM05D000329 ORTHO05D005330 7.2e-35 151.0 174 47.1
FAN14G5238 Fragaria x ananassa HOM05D000329 ORTHO05D005330 7.2e-35 151.0 174 47.1
Sabra19G0028500 Salix brachista HOM05D000329 ORTHO05D000833 7.2e-35 151.0 174 48.9
Sabra19G0031800 Salix brachista HOM05D000329 ORTHO05D005330 7.2e-35 151.0 174 48.9
RcHm_v2.0_Chr3g0449631 Rosa chinensis HOM05D000329 ORTHO05D005330 9.4e-35 150.6 174 47.1
AUR62040926 Chenopodium quinoa HOM05D000329 ORTHO05D005330 1.2e-34 150.2 175 49.1
CiPaw.08G118500 Carya illinoinensis HOM05D000329 ORTHO05D005330 1.6e-34 149.8 168 49.4
Cc02_g08850 Coffea canephora HOM05D000329 ORTHO05D005330 1.6e-34 149.8 174 47.1
Migut.F01542 Erythranthe guttata HOM05D000329 ORTHO05D005330 1.6e-34 149.8 179 47.5
Solyc12g027580.3 Solanum lycopersicum HOM05D000329 ORTHO05D005330 2.7e-34 149.1 174 49.4
Sopen12g010860 Solanum pennellii HOM05D000329 ORTHO05D005330 2.7e-34 149.1 174 49.4
arahy.Tifrunner.gnm1.ann1.I5XT77 Arachis hypogaea HOM05D000329 ORTHO05D005330 7.9e-34 147.5 187 46.5
Peaxi162Scf00304g10137 Petunia axillaris HOM05D000329 ORTHO05D005330 7.9e-34 147.5 174 48.9
MSTRG.316 Avicennia marina HOM05D000329 ORTHO05D005330 1.4e-33 146.7 174 46.6
ClCG06G009520 Citrullus lanatus HOM05D000329 ORTHO05D005330 1.4e-33 146.7 176 48.3
ECA238G1533 Erigeron canadensis HOM05D000329 ORTHO05D005330 1.4e-33 146.7 174 46.6
Ah.06g191840 Amaranthus hybridus HOM05D000329 ORTHO05D005330 3.0e-33 145.6 174 50.0
MELO3C010156.2 Cucumis melo HOM05D000329 ORTHO05D005330 5.1e-33 144.8 176 47.7
CsaV3_1G045290 Cucumis sativus L. HOM05D000329 ORTHO05D005330 6.7e-33 144.4 176 47.7
Aqoxy2G03671 Aquilegia oxysepala HOM05D000329 ORTHO05D005330 4.3e-32 141.7 174 44.8
Nitab4.5_0003285g0090 Nicotiana tabacum HOM05D000329 ORTHO05D005330 4.3e-32 141.7 174 47.7
Sed0007400 Sechium edule HOM05D000329 ORTHO05D005330 4.3e-32 141.7 174 47.7
Nitab4.5_0000432g0090 Nicotiana tabacum HOM05D000329 ORTHO05D005330 1.3e-31 140.2 174 48.3
Lsat_1_v5_gn_2_16061 Lactuca sativa HOM05D000329 ORTHO05D005330 1.7e-31 139.8 174 45.4
ATR0736G139 Amborella trichopoda HOM05D000329 ORTHO05D005330 2.8e-31 139.0 174 45.4
DCAR_000980 Daucus carota HOM05D000329 ORTHO05D005330 3.7e-31 138.7 178 46.1
HanXRQChr13g0397671 Helianthus annuus HOM05D000329 ORTHO05D005330 4.8e-31 138.3 174 44.3
vmacro19990 Vaccinium macrocarpon HOM05D000329 ORTHO05D005330 1.6e-26 123.2 160 44.4
Hma1.2p1_1512F.1_g287930 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 2.1e-26 122.9 158 48.7
FAN05G4177 Fragaria x ananassa HOM05D000329 ORTHO05D005330 3.0e-25 119.0 147 44.2
Hma1.2p1_1512F.1_g287950 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 3.0e-25 119.0 183 42.1
Medtr7g115710 Medicago truncatula HOM05D000329 ORTHO05D005330 3.9e-25 118.6 139 47.5
unitig_46.g18343 Utricularia gibba HOM05D000329 ORTHO05D005330 8.8e-25 117.5 201 39.3
Zm00001eb045870 Zea mays HOM05D000329 ORTHO05D005330 5.7e-24 114.8 174 39.1
MBI10_g44932_MAGBIO Magnolia biondii HOM05D000329 ORTHO05D005330 9.7e-24 114.0 79 72.2
Mapoly0091s0014 Marchantia polymorpha HOM05D000329 ORTHO05D005330 2.8e-23 112.5 172 39.5
Os10g0477000 Oryza sativa ssp. japonica HOM05D000329 ORTHO05D005330 1.1e-22 110.5 172 40.7
Pp3c6_27570 Physcomitrium patens HOM05D000329 ORTHO05D005330 1.8e-22 109.8 172 37.8
HPP92_025571 Vanilla planifolia HOM05D000329 ORTHO05D005330 3.4e-21 105.5 174 37.9
Psat3g006480 Pisum sativum HOM05D000329 ORTHO05D005330 3.2e-19 99.0 115 47.8
Atru.chr2.952 Acer truncatum HOM05D000329 ORTHO05D005330 1.4e-17 93.6 124 43.5
SEGI_29711 Sequoiadendron giganteum HOM05D000329 ORTHO05D005330 8.8e-17 90.9 168 32.7
SMO356G0150 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 1.1e-14 84.0 166 31.9
Dinv06015 Davidia involucrata HOM05D000329 ORTHO05D005330 2.4e-14 82.8 120 40.0
Pp3c16_19950 Physcomitrium patens HOM05D000329 ORTHO05D005330 4.1e-14 82.0 160 32.5
Pp3c16_19964 Physcomitrium patens HOM05D000329 ORTHO05D005330 4.1e-14 82.0 160 32.5
CSS0019027 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 2.0e-13 79.7 130 40.0
CAN.G155.4 Capsicum annuum HOM05D000329 ORTHO05D005330 2.2e-12 76.3 120 40.0
HPP92_025585 Vanilla planifolia HOM05D000329 ORTHO05D005330 8.5e-12 74.3 79 49.4
HanXRQChr14g0434591 Helianthus annuus HOM05D000329 ORTHO05D005330 1.9e-11 73.2 109 39.4
CBR_g8586 Chara braunii HOM05D000329 ORTHO05D005330 1.6e-10 70.1 186 29.0
AagrBONN_evm.TU.Sc2ySwM_228.3774 Anthoceros agrestis HOM05D000329 ORTHO05D005330 4.7e-10 68.6 120 35.0
HPP92_025621 Vanilla planifolia HOM05D000329 ORTHO05D005330 2.3e-09 66.2 130 36.2
SMO002G0004 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 1.1e-06 57.4 77 39.0


User provided reference genes

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