Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 1.5e-74 282.7 142 100.0
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 1.2e-18 97.1 87 69.0
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 1.2e-18 97.1 87 69.0
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 2.0e-18 96.3 54 96.3
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 3.5e-18 95.5 54 96.3
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 4.5e-18 95.1 87 66.7
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 7.7e-18 94.4 95 63.2
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 7.7e-18 94.4 53 96.2
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 7.7e-18 94.4 95 63.2
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 7.7e-18 94.4 53 96.2
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 7.7e-18 94.4 95 63.2
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 1.0e-17 94.0 87 66.7
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 2.3e-17 92.8 87 66.7
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 5.0e-17 91.7 86 66.3
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 6.5e-17 91.3 54 90.7
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 8.6e-17 90.9 87 62.1
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 2.5e-16 89.4 54 88.9
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 4.2e-16 88.6 87 60.9
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 7.2e-16 87.8 54 88.9
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 2.3e-14 82.8 86 59.3
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 1.1e-11 73.9 86 58.1
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.1e-11 73.9 54 74.1
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 1.4e-11 73.6 87 56.3
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 1.8e-11 73.2 54 74.1
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 3.1e-11 72.4 54 74.1
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 4.1e-11 72.0 54 74.1
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 4.1e-11 72.0 53 75.5
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 5.4e-11 71.6 53 75.5
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 9.2e-11 70.9 53 73.6
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 1.2e-10 70.5 54 72.2
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 1.2e-10 70.5 54 74.1
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 1.2e-10 70.5 54 74.1
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 1.2e-10 70.5 54 70.4
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 1.6e-10 70.1 55 67.3
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 1.6e-10 70.1 55 67.3
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 2.7e-10 69.3 54 74.1
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 3.5e-10 68.9 53 67.9
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 4.5e-10 68.6 95 49.5
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 4.5e-10 68.6 53 67.9
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 4.5e-10 68.6 53 71.7
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 5.9e-10 68.2 54 72.2
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 5.9e-10 68.2 54 68.5
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 5.9e-10 68.2 54 68.5
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 7.8e-10 67.8 54 68.5
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 7.8e-10 67.8 54 68.5
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 7.8e-10 67.8 53 71.7
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 7.8e-10 67.8 96 47.9
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 7.8e-10 67.8 54 68.5
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 7.8e-10 67.8 95 48.4
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 7.8e-10 67.8 53 66.0
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 1.0e-09 67.4 95 48.4
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 1.0e-09 67.4 53 66.0
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.7e-09 66.6 53 69.8
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 1.7e-09 66.6 53 69.8
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 2.3e-09 66.2 54 66.7
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 2.3e-09 66.2 53 66.0
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 2.9e-09 65.9 54 66.7
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 2.9e-09 65.9 95 48.4
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 2.9e-09 65.9 54 64.8
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 2.9e-09 65.9 54 66.7
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 3.8e-09 65.5 54 64.8
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 3.8e-09 65.5 53 69.8
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 3.8e-09 65.5 53 69.8
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 5.0e-09 65.1 53 66.0
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 5.0e-09 65.1 54 68.5
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 5.0e-09 65.1 54 68.5
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 6.6e-09 64.7 53 67.9
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 6.6e-09 64.7 54 66.7
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 8.6e-09 64.3 52 67.3
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 8.6e-09 64.3 53 66.0
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 8.6e-09 64.3 54 64.8
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.1e-08 63.9 52 65.4
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 1.1e-08 63.9 53 66.0
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 1.5e-08 63.5 53 64.2
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 1.5e-08 63.5 54 64.8
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 1.5e-08 63.5 54 64.8
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 1.5e-08 63.5 54 64.8
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 1.9e-08 63.2 54 63.0
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.5e-08 62.8 85 47.1
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 2.5e-08 62.8 53 64.2
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 2.5e-08 62.8 53 66.0
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 3.3e-08 62.4 53 64.2
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 3.3e-08 62.4 54 64.8
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 5.6e-08 61.6 54 63.0
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 7.3e-08 61.2 53 64.2
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 7.3e-08 61.2 54 64.8
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 7.3e-08 61.2 54 63.0
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 7.3e-08 61.2 54 66.7
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 9.5e-08 60.8 54 64.8
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 9.5e-08 60.8 54 66.7
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.2e-07 60.5 54 63.0
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 2.8e-07 59.3 53 64.2
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 2.8e-07 59.3 54 59.3
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 2.8e-07 59.3 53 64.2
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 3.6e-07 58.9 54 63.0
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 3.6e-07 58.9 54 61.1
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 4.7e-07 58.5 53 62.3
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 4.7e-07 58.5 54 63.0
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 6.1e-07 58.2 54 61.1
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 6.1e-07 58.2 54 63.0
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 6.1e-07 58.2 54 63.0
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 8.0e-07 57.8 53 56.6
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 8.0e-07 57.8 53 58.5
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 8.0e-07 57.8 54 59.3
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 1.4e-06 57.0 55 56.4
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 1.4e-06 57.0 54 57.4
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 1.8e-06 56.6 54 55.6
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 2.3e-06 56.2 54 57.4
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 2.3e-06 56.2 53 58.5
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 3.0e-06 55.8 53 60.4
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 4.0e-06 55.5 72 51.4
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 4.0e-06 55.5 54 55.6
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 5.2e-06 55.1 54 57.4
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 6.8e-06 54.7 54 55.6


User provided reference genes

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