Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 5.2e-176 620.9 309 100.0
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 3.8e-171 604.7 308 96.4
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 8.5e-171 603.6 308 96.4
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 1.9e-170 602.4 307 97.1
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 3.6e-169 598.2 309 95.5
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 6.1e-169 597.4 307 95.8
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 5.7e-167 590.9 309 94.8
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 2.4e-165 585.5 307 94.1
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 9.1e-165 583.6 307 93.8
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 1.0e-163 580.1 309 92.2
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 8.6e-163 577.0 308 92.2
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 2.5e-162 575.5 308 91.9
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 5.5e-162 574.3 310 91.6
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 2.1e-161 572.4 314 90.8
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 2.8e-161 572.0 309 90.0
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 1.2e-156 556.6 314 89.2
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 1.4e-152 543.1 308 83.1
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 7.6e-135 484.2 301 74.1
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 1.7e-134 483.0 303 73.3
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 2.2e-134 482.6 301 74.1
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 2.9e-134 482.3 301 74.4
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 6.4e-134 481.1 303 73.3
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 6.4e-134 481.1 297 73.7
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 8.3e-134 480.7 301 75.4
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 3.2e-133 478.8 301 74.8
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 7.1e-133 477.6 309 72.5
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 3.5e-132 475.3 306 71.2
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 3.5e-132 475.3 309 73.8
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 7.8e-132 474.2 305 71.1
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 1.7e-131 473.0 301 74.8
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 2.3e-131 472.6 306 70.9
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.3e-131 472.6 309 72.5
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 6.6e-131 471.1 303 71.9
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 1.1e-130 470.3 302 71.5
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 1.5e-130 469.9 301 71.8
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 4.3e-130 468.4 301 72.8
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 4.3e-130 468.4 309 71.8
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 9.6e-130 467.2 301 72.8
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 1.2e-129 466.8 303 71.6
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 1.6e-129 466.5 309 70.6
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 2.1e-129 466.1 309 71.2
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 2.8e-129 465.7 309 71.2
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 6.2e-129 464.5 301 70.1
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 6.2e-129 464.5 309 70.6
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 1.1e-128 463.8 310 69.7
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 1.1e-128 463.8 308 70.5
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 1.4e-128 463.4 304 71.1
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 3.1e-128 462.2 303 71.0
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 4.0e-128 461.8 301 70.8
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 5.2e-128 461.5 301 70.8
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 6.8e-128 461.1 301 71.8
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 6.8e-128 461.1 309 71.2
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 3.4e-127 458.8 310 68.4
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 4.4e-127 458.4 310 68.4
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 5.8e-127 458.0 309 70.2
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 7.6e-127 457.6 301 70.1
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 7.6e-127 457.6 312 67.9
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 9.9e-127 457.2 309 69.3
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 1.3e-126 456.8 310 71.0
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 2.9e-126 455.7 309 70.2
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 2.9e-126 455.7 306 68.6
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 6.4e-126 454.5 311 69.5
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 6.4e-126 454.5 305 70.2
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 1.9e-125 453.0 302 69.9
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 2.4e-125 452.6 306 69.3
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 3.2e-125 452.2 310 67.4
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 4.2e-125 451.8 307 68.4
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 7.1e-125 451.1 309 67.3
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 1.2e-124 450.3 305 70.2
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.1e-124 449.5 300 71.0
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 3.5e-124 448.7 309 68.9
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 4.6e-124 448.4 309 67.3
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 6.0e-124 448.0 305 70.2
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 7.8e-124 447.6 303 68.6
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 1.3e-123 446.8 309 68.6
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 1.7e-123 446.4 309 68.6
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 1.7e-123 446.4 303 69.0
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 2.3e-123 446.0 309 67.0
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 2.3e-123 446.0 304 68.1
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 2.3e-123 446.0 304 67.8
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 3.9e-123 445.3 301 67.1
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 6.6e-123 444.5 301 67.1
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 1.5e-122 443.4 309 67.6
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 5.6e-122 441.4 300 67.3
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 1.3e-121 440.3 298 67.4
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 3.6e-121 438.7 305 67.5
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 1.4e-120 436.8 306 66.7
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 1.8e-120 436.4 327 64.2
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 3.1e-120 435.6 309 64.4
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 6.9e-120 434.5 383 55.9
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 1.2e-119 433.7 306 66.7
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 2.0e-119 433.0 304 65.5
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 3.4e-119 432.2 306 66.7
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 1.1e-117 427.2 308 67.2
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 1.1e-117 427.2 308 67.2
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 7.1e-117 424.5 381 56.2
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 2.7e-116 422.5 305 67.2
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 7.9e-116 421.0 345 60.9
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 2.5e-114 416.0 309 65.0
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 3.6e-113 412.1 318 64.2
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 6.2e-113 411.4 309 66.0
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 3.4e-111 405.6 297 63.6
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 1.8e-107 393.3 297 62.3
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 6.7e-107 391.3 269 66.9
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 5.6e-106 388.3 210 91.0
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 6.9e-104 381.3 262 69.5
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 7.6e-103 377.9 265 65.7
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 2.2e-102 376.3 257 68.1
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 3.8e-94 349.0 238 66.8
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 1.2e-92 344.0 301 56.1
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 2.3e-91 339.7 302 51.7
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 6.5e-86 321.6 289 54.7
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 5.5e-85 318.5 263 61.6
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 3.6e-84 315.8 201 73.1
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 3.0e-83 312.8 216 65.7
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 3.9e-83 312.4 301 50.8
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 2.0e-82 310.1 301 52.5
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 7.4e-74 281.6 177 70.6
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 1.2e-71 274.2 177 68.4
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 3.3e-66 256.1 170 76.5
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 2.0e-63 246.9 237 48.5
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 1.6e-60 237.3 178 64.0
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 2.7e-60 236.5 130 91.5
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 2.7e-60 236.5 181 65.7
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 5.9e-55 218.8 142 71.1
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 1.6e-47 194.1 188 50.5
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 1.0e-46 191.4 127 71.7
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.8e-43 180.6 130 63.1
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 1.7e-41 174.1 107 76.6
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 6.4e-41 172.2 130 63.1
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 2.3e-35 153.7 109 68.8
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 2.0e-34 150.6 145 51.7
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.0e-31 140.6 109 63.3
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.3e-30 137.9 109 64.2
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 2.3e-30 137.1 109 60.6
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 3.1e-19 100.1 74 60.8
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.3e-14 84.7 52 69.2
BcaB01g01688 Brassica carinata HOM05D006432 ORTHO05D008257 9.3e-08 62.0 27 96.3
EL10Ac5g11505 Beta vulgaris HOM05D005736 ORTHO05D026989 3.9e-06 56.6 46 60.9


User provided reference genes

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