Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19252 Brassica carinata HOM05D006169 ORTHO05D007698 1.3e-151 539.7 261 100.0
BolC3t16445H Brassica oleracea HOM05D006169 ORTHO05D007698 1.3e-148 529.6 261 98.5
BcaB04g19251 Brassica carinata HOM05D006169 ORTHO05D007698 1.2e-146 523.1 261 97.7
A03p34240 Brassica napus HOM05D006169 ORTHO05D007698 2.2e-143 512.3 261 96.2
BraA03t12598Z Brassica rapa HOM05D006169 ORTHO05D007698 2.2e-143 512.3 261 96.2
C03p41640 Brassica napus HOM05D006169 ORTHO05D007698 3.3e-139 498.4 248 98.0
BcaB04g19253 Brassica carinata HOM05D006169 ORTHO05D007698 1.2e-136 490.0 261 93.1
Sp3g04510 Schrenkiella parvula HOM05D006169 ORTHO05D007698 1.5e-136 489.6 261 92.0
AT3G05625 Arabidopsis thaliana HOM05D006169 ORTHO05D007698 9.8e-136 486.9 261 89.3
CARHR080070 Cardamine hirsuta HOM05D006169 ORTHO05D007698 1.9e-134 482.6 261 90.0
Thhalv10021364m.g Eutrema salsugineum HOM05D006169 ORTHO05D007698 1.9e-134 482.6 261 89.7
AL3G16270 Arabidopsis lyrata HOM05D006169 ORTHO05D007698 3.2e-134 481.9 261 89.7
Carub.0003s0495 Capsella rubella HOM05D006169 ORTHO05D007698 7.8e-133 477.2 262 89.3
Aa31LG5G16050 Aethionema arabicum HOM05D006169 ORTHO05D007698 1.0e-124 450.3 267 82.0
THA.LOC104802790 Tarenaya hassleriana HOM05D006169 ORTHO05D007698 6.8e-121 437.6 259 82.6
arahy.Tifrunner.gnm1.ann1.NVQ69B Arachis hypogaea HOM05D006169 ORTHO05D007698 3.7e-98 362.1 247 70.9
QL03p019145 Quercus lobata HOM05D006169 ORTHO05D007698 1.8e-97 359.8 271 69.0
Duzib177G0247 Durio zibethinus HOM05D006169 ORTHO05D007698 5.3e-97 358.2 264 70.1
Potri.013G012400 Populus trichocarpa HOM05D006169 ORTHO05D007698 1.5e-96 356.7 272 67.3
Thecc.05G316900 Theobroma cacao HOM05D006169 ORTHO05D007698 1.5e-96 356.7 267 70.0
Ciclev10001820m.g Citrus clementina HOM05D006169 ORTHO05D007698 2.6e-96 355.9 267 68.2
CANSAT54G3053 Cannabis sativa HOM05D006169 ORTHO05D007698 3.4e-96 355.5 252 70.6
Lj5g0023338 Lotus japonicus HOM05D006169 ORTHO05D007698 3.4e-96 355.5 250 68.0
Manes.08G114800 Manihot esculenta HOM05D006169 ORTHO05D007698 3.4e-96 355.5 253 69.6
Rhsim05G0136600 Rhododendron simsii HOM05D006169 ORTHO05D007698 1.3e-95 353.6 222 76.6
GSVIVG01031157001 Vitis vinifera HOM05D006169 ORTHO05D007698 1.7e-95 353.2 244 71.7
Glyma.10G150300 Glycine max HOM05D006169 ORTHO05D007698 4.9e-95 351.7 250 67.6
Medtr1g083600 Medicago truncatula HOM05D006169 ORTHO05D007698 4.9e-95 351.7 213 77.9
AUR62000726 Chenopodium quinoa HOM05D006169 ORTHO05D007698 6.5e-95 351.3 213 76.1
Eucgr.L02153 Eucalyptus grandis HOM05D006169 ORTHO05D007698 6.5e-95 351.3 255 69.8
MD04G1197600 Malus domestica HOM05D006169 ORTHO05D007698 8.4e-95 350.9 272 66.2
FvH4_6g06920 Fragaria vesca HOM05D006169 ORTHO05D007698 1.1e-94 350.5 212 78.8
COL.COLO4_10563 Corchorus olitorius HOM05D006169 ORTHO05D007698 2.5e-94 349.4 235 73.2
MELO3C004212.2 Cucumis melo HOM05D006169 ORTHO05D007698 3.2e-94 349.0 213 78.9
Eucgr.H03261 Eucalyptus grandis HOM05D006169 ORTHO05D007698 3.2e-94 349.0 223 76.7
Actinidia02688 Actinidia chinensis HOM05D006169 ORTHO05D007698 4.2e-94 348.6 255 69.8
Ca_10150_v3 Cicer arietinum L. HOM05D006169 ORTHO05D007698 4.2e-94 348.6 211 76.8
CsaV3_2G006780 Cucumis sativus L. HOM05D006169 ORTHO05D007698 4.2e-94 348.6 213 78.4
RcHm_v2.0_Chr3g0456451 Rosa chinensis HOM05D006169 ORTHO05D007698 4.2e-94 348.6 212 78.3
Gorai.007G302700 Gossypium raimondii HOM05D006169 ORTHO05D007698 7.1e-94 347.8 269 66.9
Aqoxy5G00801 Aquilegia oxysepala HOM05D006169 ORTHO05D007698 9.3e-94 347.4 212 76.9
SalBow3G0569 Salvia bowleyana HOM05D006169 ORTHO05D007698 2.1e-93 346.3 214 77.1
Sed0028110 Sechium edule HOM05D006169 ORTHO05D007698 2.1e-93 346.3 213 77.5
Gohir.A11G270300 Gossypium hirsutum HOM05D006169 ORTHO05D007698 3.5e-93 345.5 269 66.5
PGR031G2380 Punica granatum HOM05D006169 ORTHO05D007698 3.5e-93 345.5 216 76.9
Phvul.007G198500 Phaseolus vulgaris HOM05D006169 ORTHO05D007698 4.6e-93 345.1 255 66.7
HanXRQChr06g0182151 Helianthus annuus HOM05D006169 ORTHO05D007698 7.9e-93 344.4 224 73.2
Peaxi162Scf00484g00066 Petunia axillaris HOM05D006169 ORTHO05D007698 7.9e-93 344.4 247 68.4
TWI56G0200 Tripterygium wilfordii HOM05D006169 ORTHO05D007698 7.9e-93 344.4 237 71.3
Nitab4.5_0001266g0050 Nicotiana tabacum HOM05D006169 ORTHO05D007698 2.3e-92 342.8 229 72.1
Atru.chr5.1841 Acer truncatum HOM05D006169 ORTHO05D007698 3.9e-92 342.0 262 67.6
DCAR_029375 Daucus carota HOM05D006169 ORTHO05D007698 5.1e-92 341.7 256 66.0
Gohir.D11G280500 Gossypium hirsutum HOM05D006169 ORTHO05D007698 5.1e-92 341.7 269 65.4
Migut.N02103 Erythranthe guttata HOM05D006169 ORTHO05D007698 1.1e-91 340.5 243 70.4
Eucgr.H04522 Eucalyptus grandis HOM05D006169 ORTHO05D007698 2.5e-91 339.3 241 71.0
Hma1.2p1_1441F.1_g283670 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 3.3e-91 339.0 269 65.8
ECA236G4200 Erigeron canadensis HOM05D006169 ORTHO05D007698 9.6e-91 337.4 262 65.3
Cc02_g34500 Coffea canephora HOM05D006169 ORTHO05D007698 4.8e-90 335.1 211 75.4
Lsat_1_v5_gn_7_73300 Lactuca sativa HOM05D006169 ORTHO05D007698 8.2e-90 334.3 266 62.8
Ah.04g161300 Amaranthus hybridus HOM05D006169 ORTHO05D007698 1.1e-89 334.0 229 70.7
CAN.G813.8 Capsicum annuum HOM05D006169 ORTHO05D007698 1.1e-89 334.0 213 72.8
Lalb_Chr06g0167751 Lupinus albus HOM05D006169 ORTHO05D007698 1.1e-89 334.0 263 64.3
Sabra13G0011000 Salix brachista HOM05D006169 ORTHO05D007698 1.8e-89 333.2 247 67.6
Sc14g0006600 Simmondsia chinensis HOM05D006169 ORTHO05D007698 1.3e-87 327.0 260 63.5
HPP92_016954 Vanilla planifolia HOM05D006169 ORTHO05D007698 3.8e-87 325.5 219 70.8
SGA_v2.0_scaffold81G26108 Striga asiatica HOM05D006169 ORTHO05D007698 1.4e-86 323.6 220 70.9
Haze_04109 Corylus avellana HOM05D006169 ORTHO05D007698 2.5e-86 322.8 285 61.1
HPP92_016950 Vanilla planifolia HOM05D006169 ORTHO05D007698 9.3e-86 320.9 221 69.7
PSO210G0761 Papaver somniferum HOM05D006169 ORTHO05D007698 2.7e-85 319.3 222 69.8
CDE05G1145 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 3.5e-85 318.9 247 64.4
Lj9C200T3 Lonicera japonica HOM05D006169 ORTHO05D007698 3.5e-85 318.9 275 59.6
Sopen10g013390 Solanum pennellii HOM05D006169 ORTHO05D007698 4.6e-85 318.5 213 70.4
Solyc10g044710.2 Solanum lycopersicum HOM05D006169 ORTHO05D007698 1.0e-84 317.4 213 70.0
PSO832G1922 Papaver somniferum HOM05D006169 ORTHO05D007698 6.3e-82 308.1 217 69.6
EL10Ac4g09881 Beta vulgaris HOM05D006169 ORTHO05D007698 2.0e-80 303.1 204 73.0
Cfa006660 Carpinus fangiana HOM05D006169 ORTHO05D007698 2.0e-80 303.1 249 64.7
TPR.G17714 Trifolium pratense HOM05D006169 ORTHO05D007698 1.0e-79 300.8 177 78.0
CiPaw.08G158800 Carya illinoinensis HOM05D006169 ORTHO05D007698 2.2e-79 299.7 269 59.5
ATR0693G261 Amborella trichopoda HOM05D006169 ORTHO05D007698 2.9e-79 299.3 211 70.1
ClCG02G015230 Citrullus lanatus HOM05D006169 ORTHO05D007698 2.9e-79 299.3 213 69.5
unitig_0.g2320 Utricularia gibba HOM05D006169 ORTHO05D007698 3.2e-78 295.8 218 66.5
Prupe.6G318000 Prunus persica HOM05D006169 ORTHO05D007698 1.6e-77 293.5 211 68.7
FAN14G4015 Fragaria x ananassa HOM05D006169 ORTHO05D007698 2.3e-76 289.7 173 78.0
Hund07115 Selenicereus undatus HOM05D006169 ORTHO05D007698 5.1e-76 288.5 205 68.8
SEGI_23594 Sequoiadendron giganteum HOM05D006169 ORTHO05D007698 1.7e-74 283.5 213 64.3
FAN09G1827 Fragaria x ananassa HOM05D006169 ORTHO05D007698 2.8e-74 282.7 218 67.9
AUR62005238 Chenopodium quinoa HOM05D006169 ORTHO05D007698 8.2e-74 281.2 167 77.2
Nn3g21567 Nelumbo nucifera HOM05D006169 ORTHO05D007698 8.2e-74 281.2 257 58.0
Cpa.g.sc48.120 Carica papaya HOM05D006169 ORTHO05D007698 6.9e-73 278.1 315 51.1
MBI18_g25080_MAGBIO Magnolia biondii HOM05D006169 ORTHO05D007698 2.6e-72 276.2 192 71.9
Hma1.2p1_1441F.1_g283680 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 5.0e-71 271.9 228 64.0
arahy.Tifrunner.gnm1.ann1.X8FEVW Arachis hypogaea HOM05D006169 ORTHO05D007698 2.7e-69 266.2 173 73.4
ClCG00G004550 Citrullus lanatus HOM05D006169 ORTHO05D007698 1.4e-68 263.8 294 50.3
Pp3c1_33190 Physcomitrium patens HOM05D006169 ORTHO05D007698 6.7e-68 261.5 196 65.3
CDE11G0042 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 5.7e-67 258.5 225 57.8
Zm00001eb340780 Zea mays HOM05D006169 ORTHO05D007698 2.8e-66 256.1 172 70.9
Oeu048884.1 Olea europaea HOM05D006169 ORTHO05D007698 9.1e-65 251.1 159 76.7
Dinv24403 Davidia involucrata HOM05D006169 ORTHO05D007698 1.6e-64 250.4 205 66.8
Psat6g151520 Pisum sativum HOM05D006169 ORTHO05D007698 1.0e-63 247.7 159 74.8
Mapoly0065s0090 Marchantia polymorpha HOM05D006169 ORTHO05D007698 7.2e-62 241.5 196 58.2
Actinidia19770 Actinidia chinensis HOM05D006169 ORTHO05D007698 1.1e-57 227.6 169 68.6
Cre12.g508350 Chlamydomonas reinhardtii HOM05D006169 ORTHO05D007698 4.1e-57 225.7 179 59.8
CBR_g8203 Chara braunii HOM05D006169 ORTHO05D007698 4.5e-56 222.2 202 54.5
SMO358G0244 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 4.7e-53 212.2 181 56.4
FAN05G4461 Fragaria x ananassa HOM05D006169 ORTHO05D007698 2.6e-51 206.5 182 62.1
VMungo0720G2022 Vigna mungo HOM05D006169 ORTHO05D007698 2.6e-51 206.5 245 49.8
AagrBONN_evm.TU.Sc2ySwM_344.2014 Anthoceros agrestis HOM05D006169 ORTHO05D007698 4.4e-51 205.7 163 60.7
Nitab4.5_0000005g0540 Nicotiana tabacum HOM05D006169 ORTHO05D007698 4.8e-50 202.2 131 74.0
Glyma.20G237950 Glycine max HOM05D006169 ORTHO05D007698 1.0e-44 184.5 117 74.4
MCO01G635 Micromonas commoda HOM05D006169 ORTHO05D007698 5.9e-40 168.7 183 48.1
TAR365G0132 Trochodendron aralioides HOM05D002548 ORTHO05D003031 2.1e-37 160.2 215 43.3
arahy.Tifrunner.gnm1.ann1.91HID7 Arachis hypogaea HOM05D006169 ORTHO05D007698 2.2e-34 150.2 81 85.2
arahy.Tifrunner.gnm1.ann1.Z5NCG3 Arachis hypogaea HOM05D006169 ORTHO05D007698 2.4e-33 146.7 81 84.0
arahy.Tifrunner.gnm1.ann1.W0CMT4 Arachis hypogaea HOM05D006169 ORTHO05D007698 3.3e-30 136.3 76 82.9
PRCOL_00000586 Prasinoderma coloniale HOM05D006169 ORTHO05D007698 6.2e-29 132.1 184 38.6
PGSC0003DMG400043741 Solanum tuberosum HOM05D006169 ORTHO05D007698 1.7e-26 124.0 117 53.0
SMO117G0309 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 2.9e-26 123.2 116 43.1
RcHm_v2.0_Chr1g0332671 Rosa chinensis HOM05D006169 ORTHO05D007698 8.3e-26 121.7 69 78.3
arahy.Tifrunner.gnm1.ann1.CWA5R2 Arachis hypogaea HOM05D006169 ORTHO05D007698 5.6e-22 109.0 58 84.5
Sabra13G0011100 Salix brachista HOM05D006169 ORTHO05D007698 9.5e-22 108.2 167 44.9
MSTRG.5122 Avicennia marina HOM05D006169 ORTHO05D007698 6.4e-18 95.5 72 65.3
CSS0014495 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 1.9e-17 94.0 79 58.2
CSS0040457 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 1.5e-14 84.3 51 74.5
arahy.Tifrunner.gnm1.ann1.4I5A07 Arachis hypogaea HOM05D000158 ORTHO05D003614 5.6e-14 82.4 45 80.0
Os01g0343500 Oryza sativa ssp. japonica HOM05D006169 ORTHO05D007698 5.6e-14 82.4 105 41.0
arahy.Tifrunner.gnm1.ann1.C5NY6B Arachis hypogaea HOM05D006169 ORTHO05D007698 7.3e-14 82.0 58 67.2
Thhalv10021645m.g Eutrema salsugineum HOM05D007375 ORTHO05D009293 3.6e-13 79.7 62 71.0
arahy.Tifrunner.gnm1.ann1.GNZ56J Arachis hypogaea HOM05D006169 ORTHO05D007698 6.8e-12 75.5 44 75.0


User provided reference genes

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