Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19245 Brassica carinata HOM05D002865 ORTHO05D003289 8.6e-105 383.6 192 100.0
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 1.1e-35 154.1 86 87.2
BolC3t16448H Brassica oleracea HOM05D002865 ORTHO05D003289 1.1e-35 154.1 86 87.2
BcaB04g19249 Brassica carinata HOM05D000005 ORTHO05D000449 1.6e-34 150.2 86 84.9
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 2.7e-34 149.4 86 84.9
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 3.6e-34 149.1 86 83.7
Sp3g04550 Schrenkiella parvula HOM05D002865 ORTHO05D003289 2.6e-32 142.9 86 77.9
CARHR080120 Cardamine hirsuta HOM05D002865 ORTHO05D003289 4.4e-32 142.1 104 67.3
Thhalv10020747m.g Eutrema salsugineum HOM05D002865 ORTHO05D003289 6.3e-31 138.3 104 65.4
AT3G05675 Arabidopsis thaliana HOM05D002865 ORTHO05D003289 1.1e-30 137.5 104 66.3
AL3G16330 Arabidopsis lyrata HOM05D002865 ORTHO05D003289 3.1e-30 136.0 105 65.7
Carub.0003s0501 Capsella rubella HOM05D002865 ORTHO05D003289 4.5e-29 132.1 105 63.8
THA.LOC104816643 Tarenaya hassleriana HOM05D002865 ORTHO05D003289 5.0e-28 128.6 86 70.9
Ciclev10011740m.g Citrus clementina HOM05D002865 ORTHO05D003289 6.1e-26 121.7 86 64.0
QL07p036606 Quercus lobata HOM05D002865 ORTHO05D003289 6.1e-26 121.7 86 65.1
Atru.chr8.1349 Acer truncatum HOM05D002865 ORTHO05D003289 1.4e-25 120.6 86 64.0
Lalb_Chr01g0017861 Lupinus albus HOM05D002865 ORTHO05D003289 1.4e-25 120.6 86 62.8
Duzib093G2181 Durio zibethinus HOM05D002865 ORTHO05D003289 1.8e-25 120.2 86 65.1
Glyma.19G199400 Glycine max HOM05D002865 ORTHO05D003289 2.3e-25 119.8 86 64.0
arahy.Tifrunner.gnm1.ann1.0FNG65 Arachis hypogaea HOM05D002865 ORTHO05D003289 3.0e-25 119.4 86 64.0
Glyma.03G202400 Glycine max HOM05D002865 ORTHO05D003289 6.8e-25 118.2 86 62.8
Thecc.05G105100 Theobroma cacao HOM05D002865 ORTHO05D003289 8.8e-25 117.9 86 62.8
GSVIVG01011145001 Vitis vinifera HOM05D002865 ORTHO05D003289 1.2e-24 117.5 86 62.8
Cpa.g.sc104.26 Carica papaya HOM05D002865 ORTHO05D003289 1.5e-24 117.1 86 61.6
CiPaw.10G018000 Carya illinoinensis HOM05D002865 ORTHO05D003289 2.0e-24 116.7 86 61.6
Gohir.A04G057700 Gossypium hirsutum HOM05D002865 ORTHO05D003289 3.4e-24 115.9 84 63.1
Gohir.D04G091500 Gossypium hirsutum HOM05D002865 ORTHO05D003289 3.4e-24 115.9 84 63.1
Gorai.009G396800 Gossypium raimondii HOM05D002865 ORTHO05D003289 3.4e-24 115.9 84 63.1
MBI12_g10424_MAGBIO Magnolia biondii HOM05D002865 ORTHO05D003289 5.7e-24 115.2 86 61.6
FvH4_6g20360 Fragaria vesca HOM05D002865 ORTHO05D003289 7.5e-24 114.8 86 61.6
FAN05G2473 Fragaria x ananassa HOM05D002865 ORTHO05D003289 7.5e-24 114.8 86 61.6
FAN05G2646 Fragaria x ananassa HOM05D002865 ORTHO05D003289 7.5e-24 114.8 86 61.6
FAN14G2618 Fragaria x ananassa HOM05D002865 ORTHO05D003289 7.5e-24 114.8 86 61.6
FAN02G0504 Fragaria x ananassa HOM05D002865 ORTHO05D003289 9.8e-24 114.4 86 60.5
MD12G1049200 Malus domestica HOM05D002865 ORTHO05D003289 9.8e-24 114.4 86 58.1
Medtr7g106330 Medicago truncatula HOM05D002865 ORTHO05D003289 9.8e-24 114.4 86 59.3
Phvul.001G195900 Phaseolus vulgaris HOM05D002865 ORTHO05D003289 9.8e-24 114.4 86 60.5
Sabra06G0156000 Salix brachista HOM05D002865 ORTHO05D003289 9.8e-24 114.4 86 61.6
TAR369G0763 Trochodendron aralioides HOM05D002865 ORTHO05D003289 1.3e-23 114.0 86 59.3
CANSAT64G2938 Cannabis sativa HOM05D002865 ORTHO05D003289 2.2e-23 113.2 86 61.6
COL.COLO4_29569 Corchorus olitorius HOM05D002865 ORTHO05D003289 2.2e-23 113.2 86 59.3
Cfa020035 Carpinus fangiana HOM05D002865 ORTHO05D003289 2.8e-23 112.8 86 62.8
FAN09G3527 Fragaria x ananassa HOM05D002865 ORTHO05D003289 2.8e-23 112.8 86 60.5
Manes.09G045700 Manihot esculenta HOM05D002865 ORTHO05D003289 2.8e-23 112.8 86 59.3
VMungo1383G3695 Vigna mungo HOM05D002865 ORTHO05D003289 2.8e-23 112.8 86 59.3
Potri.006G202900 Populus trichocarpa HOM05D002865 ORTHO05D003289 3.7e-23 112.5 86 60.5
Hund14962 Selenicereus undatus HOM05D002865 ORTHO05D003289 3.7e-23 112.5 86 61.6
AUR62036371 Chenopodium quinoa HOM05D002865 ORTHO05D003289 4.8e-23 112.1 86 62.8
RcHm_v2.0_Chr3g0475971 Rosa chinensis HOM05D002865 ORTHO05D003289 4.8e-23 112.1 86 59.3
MSTRG.26606 Avicennia marina HOM05D002865 ORTHO05D003289 6.3e-23 111.7 86 61.6
Lj3C422T5 Lonicera japonica HOM05D002865 ORTHO05D003289 6.3e-23 111.7 86 58.1
unitig_8.g4977 Utricularia gibba HOM05D002865 ORTHO05D003289 6.3e-23 111.7 86 59.3
Ca_09060_v3 Cicer arietinum L. HOM05D002865 ORTHO05D003289 1.1e-22 110.9 86 60.5
TWI74G0042 Tripterygium wilfordii HOM05D002865 ORTHO05D003289 1.4e-22 110.5 86 59.3
AUR62030731 Chenopodium quinoa HOM05D002865 ORTHO05D003289 2.4e-22 109.8 86 61.6
Actinidia03886 Actinidia chinensis HOM05D002865 ORTHO05D003289 3.1e-22 109.4 86 59.3
Actinidia03995 Actinidia chinensis HOM05D002865 ORTHO05D003289 3.1e-22 109.4 86 59.3
ClCG04G005150 Citrullus lanatus HOM05D002865 ORTHO05D003289 3.1e-22 109.4 86 60.5
Cc06_g06610 Coffea canephora HOM05D002865 ORTHO05D003289 3.1e-22 109.4 86 55.8
Lj1g0018446 Lotus japonicus HOM05D002865 ORTHO05D003289 3.1e-22 109.4 86 58.1
Actinidia37749 Actinidia chinensis HOM05D002865 ORTHO05D003289 4.1e-22 109.0 86 59.3
CSS0009458 Camellia sinensis var. sinensis HOM05D002865 ORTHO05D003289 4.1e-22 109.0 86 60.5
MELO3C008785.2 Cucumis melo HOM05D002865 ORTHO05D003289 4.1e-22 109.0 86 61.6
Migut.L01829 Erythranthe guttata HOM05D002865 ORTHO05D003289 4.1e-22 109.0 86 59.3
Prupe.7G094200 Prunus persica HOM05D002865 ORTHO05D003289 4.1e-22 109.0 86 57.0
CsaV3_4G013470 Cucumis sativus L. HOM05D002865 ORTHO05D003289 5.4e-22 108.6 86 59.3
MD14G1048100 Malus domestica HOM05D002865 ORTHO05D003289 5.4e-22 108.6 86 57.0
Oeu042076.1 Olea europaea HOM05D002865 ORTHO05D003289 5.4e-22 108.6 86 59.3
PSO384G1255 Papaver somniferum HOM05D002865 ORTHO05D003289 5.4e-22 108.6 84 58.3
Haze_20179 Corylus avellana HOM05D002865 ORTHO05D003289 9.1e-22 107.8 86 57.0
Dinv12341 Davidia involucrata HOM05D002865 ORTHO05D003289 1.2e-21 107.5 86 55.8
Aqoxy1G00651 Aquilegia oxysepala HOM05D002865 ORTHO05D003289 2.0e-21 106.7 86 57.0
Haze_20175 Corylus avellana HOM05D002865 ORTHO05D003289 2.0e-21 106.7 86 59.3
EL10Ac5g12973 Beta vulgaris HOM05D002865 ORTHO05D003289 2.7e-21 106.3 86 59.3
Peaxi162Scf00910g00220 Petunia axillaris HOM05D002865 ORTHO05D003289 2.7e-21 106.3 86 54.7
Rhsim10G0140600 Rhododendron simsii HOM05D002865 ORTHO05D003289 3.5e-21 105.9 86 58.1
vmacro12836 Vaccinium macrocarpon HOM05D002865 ORTHO05D003289 3.5e-21 105.9 86 58.1
Nn6g34682 Nelumbo nucifera HOM05D002865 ORTHO05D003289 4.5e-21 105.5 85 63.5
CAN.G574.4 Capsicum annuum HOM05D002865 ORTHO05D003289 5.9e-21 105.1 86 57.0
Eucgr.A02587 Eucalyptus grandis HOM05D002865 ORTHO05D003289 5.9e-21 105.1 86 57.0
Psat3g028440 Pisum sativum HOM05D002865 ORTHO05D003289 5.9e-21 105.1 86 53.5
PGSC0003DMG400021355 Solanum tuberosum HOM05D002865 ORTHO05D003289 5.9e-21 105.1 86 57.0
Sed0026465 Sechium edule HOM05D002865 ORTHO05D003289 7.7e-21 104.8 86 58.1
Nitab4.5_0000077g0070 Nicotiana tabacum HOM05D002865 ORTHO05D003289 1.3e-20 104.0 86 55.8
Nitab4.5_0000384g0010 Nicotiana tabacum HOM05D002865 ORTHO05D003289 1.3e-20 104.0 86 55.8
PSO339G0847 Papaver somniferum HOM05D002865 ORTHO05D003289 1.3e-20 104.0 84 56.0
Solyc01g007060.3 Solanum lycopersicum HOM05D002865 ORTHO05D003289 1.3e-20 104.0 86 57.0
Sopen01g003040 Solanum pennellii HOM05D002865 ORTHO05D003289 1.3e-20 104.0 86 57.0
C03p41710 Brassica napus HOM05D000005 ORTHO05D013238 6.6e-20 101.7 74 71.6
Hma1.2p1_0079F.1_g041773 Hydrangea macrophylla HOM05D002865 ORTHO05D003289 6.6e-20 101.7 86 53.5
Hma1.2p1_0079F.1_g041790 Hydrangea macrophylla HOM05D002865 ORTHO05D003289 6.6e-20 101.7 86 53.5
Sc01g0005360 Simmondsia chinensis HOM05D002865 ORTHO05D003289 8.6e-20 101.3 86 57.0
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 1.1e-19 100.9 64 79.7
HanXRQChr02g0053241 Helianthus annuus HOM05D002865 ORTHO05D003289 3.3e-19 99.4 86 53.5
Lsat_1_v5_gn_6_33500 Lactuca sativa HOM05D002865 ORTHO05D003289 3.6e-18 95.9 86 54.7
ECA233G4705 Erigeron canadensis HOM05D002865 ORTHO05D003289 1.4e-17 94.0 86 52.3
HPP92_000996 Vanilla planifolia HOM05D002865 ORTHO05D003289 1.4e-17 94.0 86 50.0
Lj3C423T6 Lonicera japonica HOM05D002865 ORTHO05D003289 1.8e-17 93.6 89 51.7
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 4.0e-17 92.4 64 76.6
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 4.0e-17 92.4 64 76.6
ATR0772G218 Amborella trichopoda HOM05D002865 ORTHO05D003289 2.6e-16 89.7 83 54.2
Oeu013551.1 Olea europaea HOM05D002865 ORTHO05D003289 2.6e-16 89.7 90 52.2
Aa31LG5G16090 Aethionema arabicum HOM05D002865 ORTHO05D003289 5.7e-16 88.6 56 69.6
Lj3C423T18 Lonicera japonica HOM05D002865 ORTHO05D003289 5.7e-16 88.6 88 52.3
HanXRQChr17g0534361 Helianthus annuus HOM05D002865 ORTHO05D003289 9.8e-16 87.8 101 48.5
HanXRQChr17g0534481 Helianthus annuus HOM05D002865 ORTHO05D003289 9.8e-16 87.8 101 48.5
SEGI_32450 Sequoiadendron giganteum HOM05D002865 ORTHO05D003289 9.8e-16 87.8 92 47.8
Lj3A423T50 Lonicera japonica HOM05D002865 ORTHO05D003289 1.3e-15 87.4 81 53.1
ATR0757G155 Amborella trichopoda HOM05D002865 ORTHO05D003289 2.8e-15 86.3 91 49.5
Pp3c20_1690 Physcomitrium patens HOM05D002865 ORTHO05D003289 2.8e-15 86.3 105 45.7
Ciclev10020226m.g Citrus clementina HOM05D002865 ORTHO05D003289 4.9e-15 85.5 102 45.1
Os07g0668800 Oryza sativa ssp. japonica HOM05D002865 ORTHO05D003289 4.9e-15 85.5 88 48.9
Cc08_g16580 Coffea canephora HOM05D002865 ORTHO05D003289 1.1e-14 84.3 101 45.5
Mapoly0850s0001 Marchantia polymorpha HOM05D002865 ORTHO05D003289 1.1e-14 84.3 93 50.5
Atru.chr9.1914 Acer truncatum HOM05D002865 ORTHO05D003289 1.4e-14 84.0 85 49.4
TAR374G1250 Trochodendron aralioides HOM05D002865 ORTHO05D003289 1.4e-14 84.0 114 44.7
COL.COLO4_10768 Corchorus olitorius HOM05D002865 ORTHO05D003289 1.8e-14 83.6 101 44.6
Hund11362 Selenicereus undatus HOM05D002865 ORTHO05D003289 1.8e-14 83.6 90 46.7
Aqoxy7G00042 Aquilegia oxysepala HOM05D002865 ORTHO05D003289 2.4e-14 83.2 90 50.0
CSS0036805 Camellia sinensis var. sinensis HOM05D002865 ORTHO05D003289 3.1e-14 82.8 101 46.5
HPP92_022373 Vanilla planifolia HOM05D002865 ORTHO05D003289 3.1e-14 82.8 87 47.1
GSVIVG01019622001 Vitis vinifera HOM05D002865 ORTHO05D003289 3.1e-14 82.8 89 49.4
Sc01g0010530 Simmondsia chinensis HOM05D002865 ORTHO05D003289 4.1e-14 82.4 90 46.7
AUR62007031 Chenopodium quinoa HOM05D002865 ORTHO05D003289 7.0e-14 81.6 89 47.2
AUR62019895 Chenopodium quinoa HOM05D002865 ORTHO05D003289 9.2e-14 81.3 113 42.5
Haze_09131 Corylus avellana HOM05D002865 ORTHO05D003289 9.2e-14 81.3 100 45.0
Thecc.03G224100 Theobroma cacao HOM05D002865 ORTHO05D003289 9.2e-14 81.3 101 43.6
Duzib205G0689 Durio zibethinus HOM05D002865 ORTHO05D003289 1.2e-13 80.9 101 43.6
SGA_v2.0_scaffold35G14017 Striga asiatica HOM05D002865 ORTHO05D003289 1.2e-13 80.9 92 52.2
Zm00001eb320450 Zea mays HOM05D002865 ORTHO05D003289 1.2e-13 80.9 87 44.8
Actinidia22193 Actinidia chinensis HOM05D002865 ORTHO05D003289 1.6e-13 80.5 101 44.6
Ah.07g197790 Amaranthus hybridus HOM05D002865 ORTHO05D003289 1.6e-13 80.5 90 43.3
DCAR_006495 Daucus carota HOM05D002865 ORTHO05D003289 1.6e-13 80.5 101 44.6
ECA246G1766 Erigeron canadensis HOM05D002865 ORTHO05D003289 1.6e-13 80.5 101 44.6
Hma1.2p1_0456F.1_g156480 Hydrangea macrophylla HOM05D002865 ORTHO05D003289 2.0e-13 80.1 85 49.4
MBI04_g36400_MAGBIO Magnolia biondii HOM05D002865 ORTHO05D003289 2.7e-13 79.7 89 49.4
Duzib084G0225 Durio zibethinus HOM05D002865 ORTHO05D003289 3.5e-13 79.3 101 42.6
FvH4_5g11380 Fragaria vesca HOM05D002865 ORTHO05D003289 3.5e-13 79.3 101 43.6
FAN18G0892 Fragaria x ananassa HOM05D002865 ORTHO05D003289 3.5e-13 79.3 101 43.6
QL02p028873 Quercus lobata HOM05D002865 ORTHO05D003289 3.5e-13 79.3 101 43.6
CANSAT21G1641 Cannabis sativa HOM05D002865 ORTHO05D003289 4.5e-13 79.0 101 42.6
Gohir.A12G238800 Gossypium hirsutum HOM05D002865 ORTHO05D003289 4.5e-13 79.0 101 44.6
Pp3c23_20080 Physcomitrium patens HOM05D002865 ORTHO05D003289 4.5e-13 79.0 104 43.3
Gorai.008G257000 Gossypium raimondii HOM05D002865 ORTHO05D003289 5.9e-13 78.6 85 48.2
Dinv03435 Davidia involucrata HOM05D002865 ORTHO05D003289 7.8e-13 78.2 101 42.6
EL10Ac5g12463 Beta vulgaris HOM05D002865 ORTHO05D003289 1.0e-12 77.8 114 39.5
Eucgr.D01699 Eucalyptus grandis HOM05D002865 ORTHO05D003289 1.0e-12 77.8 90 44.4
Manes.10G065100 Manihot esculenta HOM05D002865 ORTHO05D003289 1.0e-12 77.8 100 44.0
Gohir.D12G239900 Gossypium hirsutum HOM05D002865 ORTHO05D003289 1.3e-12 77.4 85 47.1
MD14G1135500 Malus domestica HOM05D002865 ORTHO05D003289 1.3e-12 77.4 90 46.7
Prupe.5G127000 Prunus persica HOM05D002865 ORTHO05D003289 1.3e-12 77.4 101 43.6
RcHm_v2.0_Chr7g0186491 Rosa chinensis HOM05D002865 ORTHO05D003289 1.3e-12 77.4 101 42.6
FvH4_4g07840 Fragaria vesca HOM05D002865 ORTHO05D003289 1.7e-12 77.0 101 42.6
FAN12G2865 Fragaria x ananassa HOM05D002865 ORTHO05D003289 1.7e-12 77.0 101 42.6
FAN07G0927 Fragaria x ananassa HOM05D002865 ORTHO05D003289 2.3e-12 76.6 101 42.6
CDE04G0085 Ceratophyllum demersum HOM05D002865 ORTHO05D003289 2.9e-12 76.3 90 44.4
FAN22G2270 Fragaria x ananassa HOM05D002865 ORTHO05D003289 2.9e-12 76.3 101 42.6
Rhsim02G0250100 Rhododendron simsii HOM05D002865 ORTHO05D003289 2.9e-12 76.3 85 48.2
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 2.9e-12 76.3 73 65.8
Os06g0129200 Oryza sativa ssp. japonica HOM05D002865 ORTHO05D003289 3.8e-12 75.9 88 52.3
Pp3c24_16440 Physcomitrium patens HOM05D002865 ORTHO05D003289 3.8e-12 75.9 103 40.8
Potri.001G086100 Populus trichocarpa HOM05D002865 ORTHO05D003289 3.8e-12 75.9 101 40.6
CiPaw.12G079100 Carya illinoinensis HOM05D002865 ORTHO05D003289 5.0e-12 75.5 100 42.0
Zm00001eb378460 Zea mays HOM05D002865 ORTHO05D003289 6.6e-12 75.1 85 49.4
Sabra03G0105300 Salix brachista HOM05D002865 ORTHO05D003289 1.5e-11 73.9 85 43.5
FAN08G2803 Fragaria x ananassa HOM05D002865 ORTHO05D003289 2.5e-11 73.2 101 41.6
MD06G1114200 Malus domestica HOM05D002865 ORTHO05D003289 2.5e-11 73.2 90 44.4
CDE12G0790 Ceratophyllum demersum HOM05D002865 ORTHO05D003289 3.3e-11 72.8 95 41.1
FAN17G1400 Fragaria x ananassa HOM05D002865 ORTHO05D003289 4.3e-11 72.4 102 40.2
CDE02G3339 Ceratophyllum demersum HOM05D002865 ORTHO05D003289 5.6e-11 72.0 59 54.2
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 7.3e-11 71.6 86 57.0
PSO063G4504 Papaver somniferum HOM05D002865 ORTHO05D003289 7.3e-11 71.6 88 45.5
Pp3c8_21540 Physcomitrium patens HOM05D002865 ORTHO05D003289 9.5e-11 71.2 103 39.8
PSO782G0568 Papaver somniferum HOM05D002865 ORTHO05D003289 1.2e-10 70.9 88 45.5
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 1.6e-10 70.5 95 53.7
Sabra01G0062400 Salix brachista HOM05D002865 ORTHO05D003289 1.6e-10 70.5 101 38.6
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 1.4e-09 67.4 70 60.0
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 1.8e-09 67.0 71 62.0
SMO304G0015 Selaginella moellendorffii HOM05D002865 ORTHO05D003289 1.8e-09 67.0 88 45.5
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 3.4e-08 62.8 73 57.5
Lj3A423G40 Lonicera japonica HOM05D002865 ORTHO05D003289 7.5e-08 61.6 52 51.9
SalBow5G2621 Salvia bowleyana HOM05D002865 ORTHO05D003289 1.7e-07 60.5 50 60.0
CiPaw.11G114700 Carya illinoinensis HOM05D002865 ORTHO05D003289 1.4e-06 57.4 86 37.2


User provided reference genes

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