Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 6.6e-81 303.9 146 100.0
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 1.9e-75 285.8 146 91.8
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 4.3e-72 274.6 142 89.4
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 1.2e-71 273.1 146 86.3
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 4.7e-71 271.2 146 86.3
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 6.2e-71 270.8 146 85.6
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 8.1e-71 270.4 145 86.9
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 1.4e-70 269.6 146 85.6
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 1.4e-70 269.6 146 85.6
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 3.1e-70 268.5 146 85.6
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 9.0e-70 266.9 151 83.4
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 1.2e-69 266.5 146 82.9
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 5.8e-69 264.2 146 84.9
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 3.8e-68 261.5 146 79.5
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 8.4e-68 260.4 146 79.5
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 1.9e-67 259.2 162 77.2
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 4.2e-67 258.1 146 80.1
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 1.7e-65 252.7 146 78.1
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 2.3e-65 252.3 146 78.1
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 8.7e-65 250.4 146 77.4
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 2.1e-63 245.7 148 75.7
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 2.8e-63 245.4 138 80.4
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 5.3e-62 241.1 145 71.7
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 5.3e-62 241.1 146 73.3
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 6.9e-62 240.7 165 69.1
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 1.2e-61 240.0 146 74.7
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 1.5e-61 239.6 138 79.0
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 1.5e-61 239.6 140 75.7
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 3.4e-61 238.4 174 67.2
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 9.9e-61 236.9 138 79.0
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 1.7e-60 236.1 140 73.6
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 2.9e-60 235.3 140 73.6
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 8.4e-60 233.8 145 72.4
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 1.1e-59 233.4 143 72.7
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 1.1e-59 233.4 142 70.4
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 1.1e-59 233.4 139 74.1
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 1.9e-59 232.6 137 74.5
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 4.2e-59 231.5 143 72.0
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 9.3e-59 230.3 138 75.4
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 1.2e-58 229.9 142 69.0
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 1.6e-58 229.6 137 73.0
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 1.6e-58 229.6 137 74.5
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 7.9e-58 227.3 146 68.5
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 7.9e-58 227.3 140 72.9
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 1.3e-57 226.5 143 69.2
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 1.8e-57 226.1 143 70.6
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 2.3e-57 225.7 140 72.1
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 2.3e-57 225.7 140 72.1
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 3.9e-57 224.9 144 69.4
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 1.1e-56 223.4 145 69.7
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 1.5e-56 223.0 133 72.2
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 7.4e-56 220.7 138 70.3
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 9.6e-56 220.3 138 70.3
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 9.6e-56 220.3 138 70.3
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 9.6e-56 220.3 146 68.5
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 1.3e-55 219.9 143 67.1
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 1.6e-55 219.5 210 54.3
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 1.6e-55 219.5 137 70.1
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 1.6e-55 219.5 142 66.9
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 2.1e-55 219.2 144 68.1
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 3.7e-55 218.4 139 68.3
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 4.8e-55 218.0 146 67.1
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 4.8e-55 218.0 142 66.2
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 6.2e-55 217.6 143 67.1
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 8.1e-55 217.2 139 68.3
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 8.1e-55 217.2 139 67.6
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 1.4e-54 216.5 142 64.8
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.4e-54 216.5 142 64.8
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.4e-54 216.5 146 65.1
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 1.4e-54 216.5 143 66.4
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 1.4e-54 216.5 146 67.1
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 1.8e-54 216.1 143 66.4
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 2.4e-54 215.7 142 66.2
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 2.4e-54 215.7 123 78.9
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 3.1e-54 215.3 126 74.6
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 4.0e-54 214.9 143 65.7
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 1.2e-53 213.4 143 65.7
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 1.5e-53 213.0 143 64.3
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 2.0e-53 212.6 146 65.1
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 3.4e-53 211.8 143 65.0
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 4.5e-53 211.5 144 63.2
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 4.5e-53 211.5 146 64.4
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 4.5e-53 211.5 145 66.9
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 7.6e-53 210.7 139 66.9
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 9.9e-53 210.3 143 65.7
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 1.3e-52 209.9 137 70.8
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 2.9e-52 208.8 144 64.6
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 4.9e-52 208.0 143 62.9
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.1e-51 206.8 143 66.4
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 2.4e-51 205.7 141 64.5
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 3.2e-51 205.3 139 64.0
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 5.5e-51 204.5 146 63.7
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 2.7e-50 202.2 143 65.0
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 3.5e-50 201.8 137 66.4
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 7.9e-50 200.7 141 61.7
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 1.0e-49 200.3 140 65.7
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 1.0e-49 200.3 140 65.7
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 1.3e-49 199.9 144 63.2
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 3.9e-49 198.4 141 65.2
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 3.9e-49 198.4 143 62.2
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 6.7e-49 197.6 143 62.2
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 6.7e-49 197.6 143 60.8
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 8.7e-49 197.2 144 61.1
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.1e-48 196.8 132 62.9
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.1e-48 196.8 143 62.2
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 2.5e-48 195.7 121 68.6
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 3.3e-48 195.3 140 62.1
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 5.6e-48 194.5 141 62.4
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 1.6e-47 193.0 140 61.4
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 2.1e-47 192.6 143 62.2
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 4.8e-47 191.4 141 58.9
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 4.8e-47 191.4 143 59.4
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 8.2e-47 190.7 143 59.4
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 1.1e-46 190.3 121 70.2
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 1.4e-46 189.9 119 68.1
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 1.4e-46 189.9 119 68.1
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 4.0e-46 188.3 135 60.0
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 6.9e-46 187.6 144 59.0
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 9.0e-46 187.2 144 59.7
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 4.5e-45 184.9 136 61.0
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 1.7e-44 183.0 139 58.3
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 1.7e-44 183.0 121 67.8
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 4.9e-44 181.4 121 64.5
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 4.9e-44 181.4 143 57.3
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.9e-43 179.5 143 59.4
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 9.3e-43 177.2 117 65.8
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 1.2e-42 176.8 138 59.4
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 3.9e-41 171.8 111 68.5
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 3.3e-40 168.7 111 64.0
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 8.2e-39 164.1 142 53.5
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 5.3e-38 161.4 115 63.5
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 5.3e-38 161.4 134 53.0
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 6.9e-38 161.0 102 67.6
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 2.2e-36 156.0 141 55.3
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.1e-32 143.7 131 51.9
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.2e-31 139.4 125 48.0
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.2e-31 139.4 125 48.0
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 1.0e-28 130.6 85 68.2
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 1.6e-26 123.2 132 43.2
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 2.1e-26 122.9 131 46.6
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 7.9e-26 120.9 99 54.5
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 1.8e-25 119.8 99 52.5
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 1.5e-24 116.7 149 43.0
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 4.8e-23 111.7 127 42.5
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 6.3e-23 111.3 103 51.5
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 3.4e-21 105.5 137 38.7
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 4.5e-21 105.1 134 37.3
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 5.9e-21 104.8 143 35.0
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 1.3e-20 103.6 134 36.6
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 4.2e-19 98.6 134 36.6
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 4.7e-18 95.1 133 34.6
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 2.3e-17 92.8 62 72.6
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 1.1e-16 90.5 62 71.0
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 1.1e-16 90.5 62 71.0
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 1.1e-16 90.5 62 71.0
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 1.1e-16 90.5 100 48.0
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 2.6e-16 89.4 135 34.8
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 4.8e-15 85.1 54 63.0
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 6.3e-15 84.7 68 54.4
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 1.1e-14 84.0 59 61.0
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 4.1e-14 82.0 112 41.1
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 1.1e-11 73.9 82 40.2
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 2.3e-09 66.2 117 33.3
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 5.7e-08 61.6 32 78.1
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 5.7e-08 61.6 49 55.1
HanXRQChr11g0343111 Helianthus annuus HOM05D004462 ORTHO05D005231 7.5e-08 61.2 41 65.9
Rhsim03G0265300 Rhododendron simsii HOM05D001472 ORTHO05D002655 4.1e-06 55.5 63 47.6
Rhsim08G0023200 Rhododendron simsii HOM05D000230 ORTHO05D339814 9.1e-06 54.3 35 74.3


User provided reference genes

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