Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 2.3e-243 845.1 420 100.0
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 3.2e-221 771.5 411 93.9
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 1.6e-220 769.2 413 94.2
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 6.7e-219 763.8 414 92.3
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 4.1e-216 754.6 416 92.3
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 4.5e-215 751.1 394 93.9
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 3.2e-213 745.0 415 91.1
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 3.2e-213 745.0 414 90.3
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 3.6e-212 741.5 419 90.5
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 2.3e-211 738.8 414 89.4
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 5.2e-211 737.6 414 89.6
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 4.1e-208 728.0 414 89.6
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 5.2e-203 711.1 415 87.5
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 5.7e-202 707.6 414 85.7
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 5.7e-202 707.6 414 86.7
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 1.5e-197 693.0 412 85.2
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 2.2e-190 669.1 374 89.8
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 2.9e-190 668.7 410 81.7
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 6.5e-190 667.5 374 89.6
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 8.0e-188 660.6 347 91.9
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 6.8e-187 657.5 414 82.4
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 2.0e-167 592.8 411 72.0
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 6.6e-166 587.8 411 72.0
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 4.3e-165 585.1 412 71.4
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 4.3e-165 585.1 407 71.3
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 5.6e-165 584.7 411 71.5
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 2.1e-164 582.8 406 70.7
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 3.6e-164 582.0 443 66.6
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 2.3e-163 579.3 297 92.6
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 3.1e-163 578.9 411 71.0
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 3.1e-163 578.9 405 71.1
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 4.0e-163 578.6 419 70.2
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 4.4e-162 575.1 406 70.2
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 5.8e-162 574.7 407 70.8
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 1.3e-161 573.5 408 70.8
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 1.3e-161 573.5 408 70.8
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 1.7e-161 573.2 430 66.7
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 7.1e-160 567.8 402 70.9
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 2.3e-158 562.8 406 70.9
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 2.3e-158 562.8 410 69.3
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 3.0e-158 562.4 399 69.9
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 6.6e-158 561.2 406 69.5
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 8.6e-158 560.8 412 69.2
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 8.6e-158 560.8 406 69.5
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 1.1e-157 560.5 403 70.0
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 1.5e-157 560.1 409 68.0
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 1.9e-157 559.7 408 67.6
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 3.3e-157 558.9 406 69.0
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 4.3e-157 558.5 352 76.4
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.6e-156 556.6 399 69.4
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 4.7e-156 555.1 402 68.7
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 4.7e-156 555.1 396 70.2
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 4.7e-156 555.1 405 68.9
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 4.7e-156 555.1 398 69.3
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 1.1e-155 553.9 406 67.7
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 1.4e-155 553.5 398 68.3
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 1.8e-155 553.1 421 66.7
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 3.1e-155 552.4 397 68.0
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 4.0e-155 552.0 409 67.0
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 6.8e-155 551.2 398 67.6
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 1.2e-154 550.4 411 66.7
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 2.0e-154 549.7 411 66.7
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 2.6e-154 549.3 345 75.4
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 9.9e-154 547.4 402 68.2
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 1.7e-153 546.6 387 68.7
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 1.7e-153 546.6 371 72.8
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.7e-153 546.6 433 65.1
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 2.2e-153 546.2 398 68.3
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 2.2e-153 546.2 403 67.0
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 4.9e-153 545.0 368 72.0
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 4.9e-153 545.0 401 66.8
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 4.9e-153 545.0 337 76.3
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 6.4e-153 544.7 402 67.7
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 6.4e-153 544.7 357 73.1
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 6.4e-153 544.7 346 75.7
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 8.4e-153 544.3 372 71.0
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 1.4e-152 543.5 391 72.1
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 1.4e-152 543.5 406 67.0
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 1.9e-152 543.1 350 73.1
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 1.9e-152 543.1 399 67.7
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 5.4e-152 541.6 406 67.7
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 5.4e-152 541.6 407 67.6
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 9.2e-152 540.8 400 66.2
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 1.2e-151 540.4 399 66.4
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 2.1e-151 539.7 401 66.6
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 2.7e-151 539.3 406 67.7
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 4.6e-151 538.5 360 72.2
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 4.6e-151 538.5 343 75.5
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 4.6e-151 538.5 399 66.9
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 1.3e-150 537.0 368 72.6
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 1.7e-150 536.6 335 74.6
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 3.0e-150 535.8 344 73.8
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 3.9e-150 535.4 333 75.4
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 5.1e-150 535.0 341 74.5
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 5.1e-150 535.0 406 66.5
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 6.6e-150 534.6 363 70.5
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 8.6e-150 534.3 401 65.3
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 1.1e-149 533.9 332 75.9
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 2.5e-149 532.7 341 73.6
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 2.5e-149 532.7 366 69.7
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 4.3e-149 531.9 379 68.6
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 4.3e-149 531.9 426 62.2
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 1.2e-148 530.4 345 73.9
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 2.1e-148 529.6 403 65.8
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 8.1e-148 527.7 363 68.9
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 3.1e-147 525.8 413 66.8
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 3.1e-147 525.8 413 66.8
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 5.2e-147 525.0 370 68.9
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 7.6e-146 521.2 413 66.3
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 2.9e-145 519.2 336 74.7
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 3.8e-145 518.8 327 74.0
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 4.2e-144 515.4 297 82.8
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 2.1e-143 513.1 354 68.1
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 1.3e-142 510.4 327 72.8
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 1.9e-141 506.5 332 72.3
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 8.1e-140 501.1 338 69.8
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 3.1e-139 499.2 314 75.2
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 3.1e-139 499.2 384 63.8
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 3.5e-135 485.7 401 62.1
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 1.1e-133 480.7 331 66.2
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 3.7e-132 475.7 283 79.2
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 1.4e-131 473.8 336 65.5
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 2.9e-129 466.1 324 68.8
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 3.3e-125 452.6 335 66.0
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 1.8e-123 446.8 277 74.4
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 3.5e-119 432.6 339 61.1
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 1.5e-117 427.2 440 55.7
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 2.1e-111 406.8 348 56.6
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 2.2e-108 396.7 317 60.6
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 4.8e-108 395.6 339 59.3
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.6e-106 389.8 336 63.7
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 7.7e-106 388.3 262 72.5
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 5.3e-99 365.5 305 57.4
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 6.3e-92 342.0 329 56.2
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 8.0e-87 325.1 240 70.0
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 2.2e-84 317.0 188 79.8
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 3.5e-82 309.7 225 69.3
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 2.8e-76 290.0 303 52.1
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 5.0e-73 279.3 143 90.9
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 2.0e-66 257.3 157 76.4
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 5.9e-66 255.8 383 39.9
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 3.6e-63 246.5 275 49.8
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 4.7e-55 219.5 314 42.0
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 2.6e-53 213.8 236 50.4
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 6.0e-50 202.6 256 47.7
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 2.4e-43 180.6 319 37.9
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 1.3e-41 174.9 116 69.0
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 1.7e-41 174.5 131 64.1
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 2.3e-41 174.1 144 63.9
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 6.8e-38 162.5 144 61.8
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 6.8e-38 162.5 144 61.8
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 1.7e-36 157.9 148 56.8
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 2.6e-29 134.0 237 37.6
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 4.2e-27 126.7 159 45.3
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 4.2e-27 126.7 159 45.3
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 3.2e-19 100.5 175 35.4
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 6.0e-18 96.3 53 75.5
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 6.0e-18 96.3 53 75.5
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 3.5e-10 70.5 51 62.7
arahy.Tifrunner.gnm1.ann1.J07EWC Arachis hypogaea HOM05D004356 ORTHO05D005542 6.9e-06 56.2 39 64.1
arahy.Tifrunner.gnm1.ann1.E3H3WY Arachis hypogaea HOM05D000075 ORTHO05D000073 9.0e-06 55.8 45 57.8


User provided reference genes

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