Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19125 Brassica carinata HOM05D000112 ORTHO05D000564 1.8e-81 305.8 150 100.0
BcaB02g08140 Brassica carinata HOM05D000112 ORTHO05D000564 1.0e-15 87.4 101 51.5
Sp5g01540 Schrenkiella parvula HOM05D000112 ORTHO05D000564 1.3e-15 87.0 96 50.0
BcaC07g42613 Brassica carinata HOM05D000112 ORTHO05D000564 2.9e-15 85.9 96 50.0
CARHR172160 Cardamine hirsuta HOM05D000112 ORTHO05D000564 5.5e-14 81.6 99 47.5
Thhalv10005857m.g Eutrema salsugineum HOM05D000112 ORTHO05D000564 9.3e-14 80.9 96 47.9
A09p53860 Brassica napus HOM05D000112 ORTHO05D011241 2.1e-13 79.7 90 48.9
AL5G44410 Arabidopsis lyrata HOM05D000112 ORTHO05D000564 4.6e-13 78.6 95 46.3
BcaC02g10255 Brassica carinata HOM05D000112 ORTHO05D000564 2.3e-12 76.3 84 53.6
C08p36660 Brassica napus HOM05D000112 ORTHO05D011241 3.9e-12 75.5 86 48.8
AT3G61830 Arabidopsis thaliana HOM05D000112 ORTHO05D000564 5.1e-12 75.1 95 45.3
Carub.0005s2857 Capsella rubella HOM05D000112 ORTHO05D000564 1.1e-11 73.9 95 44.2
Nitab4.5_0002367g0010 Nicotiana tabacum HOM05D000112 ORTHO05D000564 6.9e-09 64.7 37 78.4
Peaxi162Scf00074g00537 Petunia axillaris HOM05D000112 ORTHO05D000564 6.9e-09 64.7 37 78.4
vmacro11537 Vaccinium macrocarpon HOM05D000112 ORTHO05D000564 6.9e-09 64.7 43 69.8
Nitab4.5_0000798g0140 Nicotiana tabacum HOM05D000112 ORTHO05D000564 1.2e-08 63.9 37 78.4
Atru.chr5.684 Acer truncatum HOM05D000112 ORTHO05D000564 4.5e-08 62.0 37 73.0
MSTRG.11906 Avicennia marina HOM05D000112 ORTHO05D000564 4.5e-08 62.0 37 75.7
Ciclev10019174m.g Citrus clementina HOM05D000112 ORTHO05D000564 4.5e-08 62.0 37 75.7
Dinv37506 Davidia involucrata HOM05D000112 ORTHO05D000564 4.5e-08 62.0 37 73.0
PGR042G1567 Punica granatum HOM05D000112 ORTHO05D000564 4.5e-08 62.0 37 75.7
SGA_v2.0_scaffold111G31395 Striga asiatica HOM05D000112 ORTHO05D000564 4.5e-08 62.0 37 73.0
TAR375G0152 Trochodendron aralioides HOM05D000112 ORTHO05D000564 4.5e-08 62.0 37 73.0
CAN.G567.23 Capsicum annuum HOM05D000112 ORTHO05D000564 5.9e-08 61.6 37 75.7
Lsat_1_v5_gn_6_84121 Lactuca sativa HOM05D000112 ORTHO05D000564 5.9e-08 61.6 37 73.0
Aqoxy7G00065 Aquilegia oxysepala HOM05D000112 ORTHO05D000564 7.7e-08 61.2 37 75.7
AL4G45950 Arabidopsis lyrata HOM05D000112 ORTHO05D000564 7.7e-08 61.2 91 40.7
Migut.A00611 Erythranthe guttata HOM05D000112 ORTHO05D000564 7.7e-08 61.2 37 73.0
CANSAT21G2032 Cannabis sativa HOM05D000112 ORTHO05D000564 1.0e-07 60.8 37 73.0
ECA246G3982 Erigeron canadensis HOM05D000112 ORTHO05D000564 1.0e-07 60.8 37 73.0
Eucgr.D01764 Eucalyptus grandis HOM05D000112 ORTHO05D000564 1.0e-07 60.8 37 73.0
RcHm_v2.0_Chr7g0186081 Rosa chinensis HOM05D000112 ORTHO05D000564 1.0e-07 60.8 37 73.0
TWI14G0269 Tripterygium wilfordii HOM05D000112 ORTHO05D000564 1.0e-07 60.8 37 73.0
vmacro12665 Vaccinium macrocarpon HOM05D000112 ORTHO05D000564 1.0e-07 60.8 38 71.1
Duzib133G1098 Durio zibethinus HOM05D000112 ORTHO05D000564 1.3e-07 60.5 37 67.6
ECA240G0445 Erigeron canadensis HOM05D000112 ORTHO05D000564 1.3e-07 60.5 37 73.0
Hma1.2p1_0440F.1_g153510 Hydrangea macrophylla HOM05D000112 ORTHO05D000564 1.3e-07 60.5 37 70.3
GSVIVG01027166001 Vitis vinifera HOM05D000112 ORTHO05D000564 1.3e-07 60.5 37 73.0
CSS0019949 Camellia sinensis var. sinensis HOM05D000112 ORTHO05D000564 1.7e-07 60.1 37 70.3
Thhalv10001365m.g Eutrema salsugineum HOM05D000112 ORTHO05D000564 1.7e-07 60.1 88 44.3
Lj2A162T43 Lonicera japonica HOM05D000112 ORTHO05D000564 1.7e-07 60.1 37 70.3
SGA_v2.0_scaffold96G29035 Striga asiatica HOM05D000112 ORTHO05D000564 1.7e-07 60.1 37 70.3
TAR374G0857 Trochodendron aralioides HOM05D000112 ORTHO05D000564 1.7e-07 60.1 37 70.3
MSTRG.25693 Avicennia marina HOM05D000112 ORTHO05D000564 2.2e-07 59.7 37 73.0
Lsat_1_v5_gn_3_11900 Lactuca sativa HOM05D000112 ORTHO05D000564 2.2e-07 59.7 37 70.3
PSO135G0674 Papaver somniferum HOM05D000112 ORTHO05D000564 2.2e-07 59.7 37 73.0
PSO384G2500 Papaver somniferum HOM05D000112 ORTHO05D000564 2.2e-07 59.7 37 73.0
QL02p029794 Quercus lobata HOM05D000112 ORTHO05D000564 2.2e-07 59.7 37 70.3
AT2G46530 Arabidopsis thaliana HOM05D000112 ORTHO05D000564 2.9e-07 59.3 91 39.6
Cc02_g39520 Coffea canephora HOM05D000112 ORTHO05D000564 2.9e-07 59.3 37 67.6
Manes.05G021700 Manihot esculenta HOM05D000112 ORTHO05D000564 2.9e-07 59.3 37 73.0
MSTRG.1798 Avicennia marina HOM05D000112 ORTHO05D000564 3.8e-07 58.9 37 70.3
Cpa.g.sc96.40 Carica papaya HOM05D000112 ORTHO05D000564 3.8e-07 58.9 37 73.0
Cc08_g16330 Coffea canephora HOM05D000112 ORTHO05D000564 3.8e-07 58.9 37 67.6
HanXRQChr13g0414871 Helianthus annuus HOM05D000112 ORTHO05D000564 3.8e-07 58.9 37 67.6
BcaB01g03205 Brassica carinata HOM05D000112 ORTHO05D000564 5.0e-07 58.5 37 64.9
CiPaw.01G077400 Carya illinoinensis HOM05D000112 ORTHO05D000564 5.0e-07 58.5 37 70.3
COL.COLO4_10736 Corchorus olitorius HOM05D000112 ORTHO05D000564 5.0e-07 58.5 37 67.6
CsaV3_4G006770 Cucumis sativus L. HOM05D000112 ORTHO05D000564 5.0e-07 58.5 37 67.6
DCAR_006517 Daucus carota HOM05D000112 ORTHO05D000564 5.0e-07 58.5 37 67.6
FvH4_5g11690 Fragaria vesca HOM05D000112 ORTHO05D000564 5.0e-07 58.5 37 70.3
FAN04G2134 Fragaria x ananassa HOM05D000112 ORTHO05D000564 5.0e-07 58.5 37 70.3
FAN08G2083 Fragaria x ananassa HOM05D000112 ORTHO05D000564 5.0e-07 58.5 37 70.3
FAN13G2682 Fragaria x ananassa HOM05D000112 ORTHO05D000564 5.0e-07 58.5 37 70.3
FAN18G0273 Fragaria x ananassa HOM05D000112 ORTHO05D000564 5.0e-07 58.5 37 70.3
FAN18G2021 Fragaria x ananassa HOM05D000112 ORTHO05D000564 5.0e-07 58.5 37 70.3
Gohir.A02G099200 Gossypium hirsutum HOM05D000112 ORTHO05D000564 5.0e-07 58.5 37 67.6
Gohir.A11G025500 Gossypium hirsutum HOM05D000112 ORTHO05D000564 5.0e-07 58.5 37 67.6
Gohir.D03G084700 Gossypium hirsutum HOM05D000112 ORTHO05D000564 5.0e-07 58.5 37 67.6
Gohir.D11G025200 Gossypium hirsutum HOM05D000112 ORTHO05D000564 5.0e-07 58.5 37 67.6
Gorai.003G078000 Gossypium raimondii HOM05D000112 ORTHO05D000564 5.0e-07 58.5 37 67.6
Gorai.007G026900 Gossypium raimondii HOM05D000112 ORTHO05D000564 5.0e-07 58.5 37 67.6
MD01G1083400 Malus domestica HOM05D000112 ORTHO05D000564 5.0e-07 58.5 37 70.3
Nn3g18963 Nelumbo nucifera HOM05D000112 ORTHO05D000564 5.0e-07 58.5 37 70.3
Prupe.2G190400 Prunus persica HOM05D000112 ORTHO05D000564 5.0e-07 58.5 37 70.3
Cfa003787 Carpinus fangiana HOM05D000112 ORTHO05D000564 6.5e-07 58.2 37 70.3
Haze_15673 Corylus avellana HOM05D000112 ORTHO05D000564 6.5e-07 58.2 37 70.3
MELO3C016272.2 Cucumis melo HOM05D000112 ORTHO05D000564 6.5e-07 58.2 37 67.6
MD07G1152100 Malus domestica HOM05D000112 ORTHO05D000564 6.5e-07 58.2 37 70.3
Medtr7g062540 Medicago truncatula HOM05D000112 ORTHO05D000564 6.5e-07 58.2 37 67.6
Solyc08g082630.3 Solanum lycopersicum HOM05D000112 ORTHO05D000564 6.5e-07 58.2 37 70.3
Sopen08g030870 Solanum pennellii HOM05D000112 ORTHO05D000564 6.5e-07 58.2 37 70.3
TPR.G1711 Trifolium pratense HOM05D000112 ORTHO05D000564 6.5e-07 58.2 37 67.6
CARHR141860 Cardamine hirsuta HOM05D000112 ORTHO05D000564 8.5e-07 57.8 41 58.5
Haze_09097 Corylus avellana HOM05D000112 ORTHO05D000564 8.5e-07 57.8 37 67.6
Dinv32602 Davidia involucrata HOM05D000112 ORTHO05D000564 8.5e-07 57.8 42 61.9
Glyma.03G070500 Glycine max HOM05D000112 ORTHO05D000564 8.5e-07 57.8 37 70.3
Hma1.2p1_2538F.1_g324120 Hydrangea macrophylla HOM05D000112 ORTHO05D000564 8.5e-07 57.8 37 73.0
RcHm_v2.0_Chr1g0360041 Rosa chinensis HOM05D000112 ORTHO05D000564 8.5e-07 57.8 37 70.3
SalBow1G6668 Salvia bowleyana HOM05D000112 ORTHO05D000564 8.5e-07 57.8 37 70.3
SalBow1G7672 Salvia bowleyana HOM05D000112 ORTHO05D000564 8.5e-07 57.8 37 70.3
VMungo0331G0852 Vigna mungo HOM05D000112 ORTHO05D000564 8.5e-07 57.8 37 70.3
GSVIVG01019566001 Vitis vinifera HOM05D000112 ORTHO05D000564 8.5e-07 57.8 37 70.3
BcaC02g12669 Brassica carinata HOM05D000112 ORTHO05D000564 1.1e-06 57.4 89 36.0
Cfa011976 Carpinus fangiana HOM05D000112 ORTHO05D000564 1.1e-06 57.4 37 67.6
COL.COLO4_06270 Corchorus olitorius HOM05D000112 ORTHO05D000564 1.1e-06 57.4 37 67.6
FvH4_7g16840 Fragaria vesca HOM05D000112 ORTHO05D000564 1.1e-06 57.4 37 70.3
FAN01G1553 Fragaria x ananassa HOM05D000112 ORTHO05D000564 1.1e-06 57.4 37 70.3
FAN06G2458 Fragaria x ananassa HOM05D000112 ORTHO05D000564 1.1e-06 57.4 37 70.3
FAN06G2825 Fragaria x ananassa HOM05D000112 ORTHO05D000564 1.1e-06 57.4 37 70.3
Phvul.010G011600 Phaseolus vulgaris HOM05D000112 ORTHO05D000564 1.1e-06 57.4 37 70.3
PGR031G2958 Punica granatum HOM05D000112 ORTHO05D000564 1.1e-06 57.4 37 64.9
Sp4g28570 Schrenkiella parvula HOM05D000112 ORTHO05D000564 1.1e-06 57.4 89 39.3
PGSC0003DMG400005794 Solanum tuberosum HOM05D000112 ORTHO05D000564 1.1e-06 57.4 37 70.3
Duzib138G1864 Durio zibethinus HOM05D000112 ORTHO05D000564 1.4e-06 57.0 37 64.9
HanXRQChr06g0166341 Helianthus annuus HOM05D000112 ORTHO05D000564 1.4e-06 57.0 37 70.3
Psat0s2445g0040 Pisum sativum HOM05D000112 ORTHO05D000564 1.4e-06 57.0 37 64.9
Sc01g0002570 Simmondsia chinensis HOM05D000112 ORTHO05D000564 1.4e-06 57.0 37 67.6
Thecc.01G340700 Theobroma cacao HOM05D000112 ORTHO05D000564 1.4e-06 57.0 37 67.6
Thecc.03G301500 Theobroma cacao HOM05D000112 ORTHO05D000564 1.4e-06 57.0 37 67.6
TWI15G0022 Tripterygium wilfordii HOM05D000112 ORTHO05D000564 1.4e-06 57.0 37 64.9
TAR629G0258 Trochodendron aralioides HOM05D000112 ORTHO05D000564 1.4e-06 57.0 37 70.3
MSTRG.17353 Avicennia marina HOM05D000112 ORTHO05D000564 1.9e-06 56.6 37 67.6
Peaxi162Scf00345g00027 Petunia axillaris HOM05D000112 ORTHO05D000564 1.9e-06 56.6 37 64.9
Potri.002G172800 Populus trichocarpa HOM05D000112 ORTHO05D000564 1.9e-06 56.6 37 70.3
Solyc01g096070.3 Solanum lycopersicum HOM05D000112 ORTHO05D000564 1.9e-06 56.6 37 64.9
Sopen01g039790 Solanum pennellii HOM05D000112 ORTHO05D000564 1.9e-06 56.6 37 64.9
PGSC0003DMG400000118 Solanum tuberosum HOM05D000112 ORTHO05D000564 1.9e-06 56.6 37 64.9
THA.LOC104802080 Tarenaya hassleriana HOM05D000112 ORTHO05D000564 1.9e-06 56.6 37 67.6
TWI60G0313 Tripterygium wilfordii HOM05D000112 ORTHO05D000564 1.9e-06 56.6 37 64.9
arahy.Tifrunner.gnm1.ann1.WDRD4S Arachis hypogaea HOM05D000112 ORTHO05D000564 2.5e-06 56.2 37 67.6
arahy.Tifrunner.gnm1.ann1.YET430 Arachis hypogaea HOM05D000112 ORTHO05D000564 2.5e-06 56.2 37 67.6
MSTRG.13892 Avicennia marina HOM05D000112 ORTHO05D000564 2.5e-06 56.2 37 64.9
EL10Ac1g00250 Beta vulgaris HOM05D000112 ORTHO05D000564 2.5e-06 56.2 37 67.6
BcaC02g12681 Brassica carinata HOM05D000112 ORTHO05D000564 2.5e-06 56.2 89 34.8
A05p01250 Brassica napus HOM05D000112 ORTHO05D011241 2.5e-06 56.2 37 64.9
C04p01400 Brassica napus HOM05D000112 ORTHO05D000564 2.5e-06 56.2 89 34.8
BolC4t21793H Brassica oleracea HOM05D000112 ORTHO05D000564 2.5e-06 56.2 89 34.8
Carub.0004s2924 Capsella rubella HOM05D000112 ORTHO05D000564 2.5e-06 56.2 37 67.6
ClCG07G011440 Citrullus lanatus HOM05D000112 ORTHO05D000564 2.5e-06 56.2 37 64.9
HanXRQChr17g0535011 Helianthus annuus HOM05D000112 ORTHO05D000564 2.5e-06 56.2 37 62.2
MD14G1131900 Malus domestica HOM05D000112 ORTHO05D000564 2.5e-06 56.2 37 67.6
Manes.01G245000 Manihot esculenta HOM05D000112 ORTHO05D000564 2.5e-06 56.2 37 70.3
Oeu008707.1 Olea europaea HOM05D000112 ORTHO05D000564 2.5e-06 56.2 37 67.6
Phvul.008G118400 Phaseolus vulgaris HOM05D000112 ORTHO05D000564 2.5e-06 56.2 37 67.6
Sopen08g004260 Solanum pennellii HOM05D000112 ORTHO05D000564 2.5e-06 56.2 37 67.6
VMungo1383G3010 Vigna mungo HOM05D000112 ORTHO05D000564 2.5e-06 56.2 37 67.6
CiPaw.11G118400 Carya illinoinensis HOM05D000112 ORTHO05D000564 3.2e-06 55.8 37 64.9
Eucgr.E00888 Eucalyptus grandis HOM05D000112 ORTHO05D000564 3.2e-06 55.8 37 64.9
Glyma.01G103500 Glycine max HOM05D000112 ORTHO05D000564 3.2e-06 55.8 37 67.6
Glyma.18G184500 Glycine max HOM05D000112 ORTHO05D000564 3.2e-06 55.8 37 67.6
AUR62023447 Chenopodium quinoa HOM05D000112 ORTHO05D000564 4.2e-06 55.5 34 70.6
Gohir.A07G136900 Gossypium hirsutum HOM05D000112 ORTHO05D000564 4.2e-06 55.5 37 64.9
Gohir.D07G142100 Gossypium hirsutum HOM05D000112 ORTHO05D000564 4.2e-06 55.5 37 64.9
Gorai.001G153900 Gossypium raimondii HOM05D000112 ORTHO05D000564 4.2e-06 55.5 37 64.9
Lalb_Chr01g0022611 Lupinus albus HOM05D000112 ORTHO05D000564 4.2e-06 55.5 37 67.6
MD06G1111100 Malus domestica HOM05D000112 ORTHO05D000564 4.2e-06 55.5 37 67.6
Nitab4.5_0001763g0030 Nicotiana tabacum HOM05D000112 ORTHO05D000564 4.2e-06 55.5 34 67.6
PSO170G3759 Papaver somniferum HOM05D000112 ORTHO05D000564 4.2e-06 55.5 37 64.9
PGSC0003DMG400012261 Solanum tuberosum HOM05D000112 ORTHO05D000564 4.2e-06 55.5 37 67.6
Aa31LG6G7200 Aethionema arabicum HOM05D000112 ORTHO05D000564 5.5e-06 55.1 37 62.2
CANSAT56G3185 Cannabis sativa HOM05D000112 ORTHO05D000564 5.5e-06 55.1 37 67.6
CiPaw.12G081000 Carya illinoinensis HOM05D000112 ORTHO05D000564 5.5e-06 55.1 37 64.9
AUR62010868 Chenopodium quinoa HOM05D000112 ORTHO05D000564 5.5e-06 55.1 37 64.9
Duzib068G0078 Durio zibethinus HOM05D000112 ORTHO05D000564 5.5e-06 55.1 37 62.2
Glyma.07G134800 Glycine max HOM05D000112 ORTHO05D000564 5.5e-06 55.1 37 67.6
Lj9C600T2 Lonicera japonica HOM05D000112 ORTHO05D000564 5.5e-06 55.1 37 67.6
Oeu004957.1 Olea europaea HOM05D000112 ORTHO05D000564 5.5e-06 55.1 39 59.0
Potri.001G088600 Populus trichocarpa HOM05D000112 ORTHO05D000564 5.5e-06 55.1 37 62.2
Potri.003G142100 Populus trichocarpa HOM05D000112 ORTHO05D000564 5.5e-06 55.1 37 62.2
Sabra01G0064800 Salix brachista HOM05D000112 ORTHO05D000564 5.5e-06 55.1 37 62.2
Sabra02G0140400 Salix brachista HOM05D000112 ORTHO05D000564 5.5e-06 55.1 37 67.6
Sabra03G0102900 Salix brachista HOM05D000112 ORTHO05D000564 5.5e-06 55.1 37 62.2
Solyc08g008380.4 Solanum lycopersicum HOM05D000112 ORTHO05D000564 5.5e-06 55.1 37 64.9
TWI59G1370 Tripterygium wilfordii HOM05D000112 ORTHO05D000564 5.5e-06 55.1 37 67.6
Atru.chr9.1935 Acer truncatum HOM05D000112 ORTHO05D000564 7.2e-06 54.7 37 64.9
Ca_07330_v3 Cicer arietinum L. HOM05D000112 ORTHO05D000564 7.2e-06 54.7 37 64.9
Duzib205G0386 Durio zibethinus HOM05D000112 ORTHO05D000564 7.2e-06 54.7 37 62.2
Migut.B01886 Erythranthe guttata HOM05D000112 ORTHO05D000564 7.2e-06 54.7 37 64.9
FAN10G0596 Fragaria x ananassa HOM05D000112 ORTHO05D000564 7.2e-06 54.7 37 67.6
FAN10G2537 Fragaria x ananassa HOM05D000112 ORTHO05D000564 7.2e-06 54.7 37 67.6
Oeu049019.1 Olea europaea HOM05D000112 ORTHO05D000564 7.2e-06 54.7 37 62.2
Hund14205 Selenicereus undatus HOM05D000112 ORTHO05D000564 7.2e-06 54.7 41 56.1
SGA_v2.0_scaffold22G09974 Striga asiatica HOM05D000112 ORTHO05D000564 7.2e-06 54.7 37 64.9
THA.LOC104817369 Tarenaya hassleriana HOM05D000112 ORTHO05D000564 7.2e-06 54.7 114 33.3
Actinidia28113 Actinidia chinensis HOM05D000112 ORTHO05D000564 9.4e-06 54.3 37 67.6
Aa31LG1G27880 Aethionema arabicum HOM05D000112 ORTHO05D000564 9.4e-06 54.3 37 67.6
Ah.05g179420 Amaranthus hybridus HOM05D000112 ORTHO05D000564 9.4e-06 54.3 37 64.9
FAN03G3002 Fragaria x ananassa HOM05D000112 ORTHO05D000564 9.4e-06 54.3 37 67.6
Lj3g0028075 Lotus japonicus HOM05D000112 ORTHO05D000564 9.4e-06 54.3 37 62.2
Psat7g239640 Pisum sativum HOM05D000112 ORTHO05D000564 9.4e-06 54.3 37 64.9
Sed0018314 Sechium edule HOM05D000112 ORTHO05D000564 9.4e-06 54.3 37 62.2
Sed0020044 Sechium edule HOM05D000112 ORTHO05D000564 9.4e-06 54.3 37 62.2
Sc22g0004870 Simmondsia chinensis HOM05D000112 ORTHO05D000564 9.4e-06 54.3 37 59.5


User provided reference genes

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