Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19094 Brassica carinata HOM05D007725 ORTHO05D009774 1.5e-177 626.7 477 100.0
A03p41610 Brassica napus HOM05D007725 ORTHO05D009774 7.8e-155 551.2 478 91.4
BraA03t13314Z Brassica rapa HOM05D007725 ORTHO05D009774 7.8e-155 551.2 478 91.4
BolC3t17381H Brassica oleracea HOM05D007725 ORTHO05D009774 7.3e-153 544.7 478 90.0
C03p50970 Brassica napus HOM05D007725 ORTHO05D009774 1.6e-152 543.5 478 90.0
Carub.0003s2010 Capsella rubella HOM05D007725 ORTHO05D009774 3.7e-141 505.8 477 86.8
AT3G20170 Arabidopsis thaliana HOM05D007725 ORTHO05D009774 1.1e-140 504.2 475 86.7
AL3G33870 Arabidopsis lyrata HOM05D007725 ORTHO05D009774 1.9e-140 503.4 475 85.1
Sp3g18200 Schrenkiella parvula HOM05D007725 ORTHO05D009774 1.6e-139 500.4 477 85.7
CARHR095760 Cardamine hirsuta HOM05D007725 ORTHO05D009774 4.6e-139 498.8 478 85.1
BolC5t33143H Brassica oleracea HOM05D007725 ORTHO05D009774 1.2e-136 490.7 460 87.6
A05p28800 Brassica napus HOM05D007725 ORTHO05D009774 3.6e-136 489.2 460 87.2
C05p44210 Brassica napus HOM05D007725 ORTHO05D009774 1.8e-135 486.9 460 87.4
Thhalv10020642m.g Eutrema salsugineum HOM05D007725 ORTHO05D009774 1.2e-134 484.2 478 84.7
Aa31LG8G7000 Aethionema arabicum HOM05D007725 ORTHO05D009774 9.6e-129 464.5 478 83.3
BraA05t21757Z Brassica rapa HOM05D007725 ORTHO05D009774 9.0e-95 351.7 210 88.6
BcaC01g03576 Brassica carinata HOM05D007725 ORTHO05D009774 2.7e-75 287.0 478 48.3
Duzib170G0716 Durio zibethinus HOM05D007725 ORTHO05D009774 5.3e-63 246.1 460 55.0
COL.COLO4_09791 Corchorus olitorius HOM05D007725 ORTHO05D009774 1.2e-59 235.0 464 59.3
Gorai.007G311000 Gossypium raimondii HOM05D007725 ORTHO05D009774 2.2e-56 224.2 464 44.8
Peaxi162Scf00955g00014 Petunia axillaris HOM05D007725 ORTHO05D009774 2.2e-56 224.2 461 54.9
Gohir.A11G277300 Gossypium hirsutum HOM05D007725 ORTHO05D009774 2.8e-56 223.8 464 48.1
VMungo0540G1375 Vigna mungo HOM05D007725 ORTHO05D009774 2.8e-56 223.8 465 56.6
Glyma.08G326100 Glycine max HOM05D007725 ORTHO05D009774 6.3e-56 222.6 466 57.3
ClCG09G021110 Citrullus lanatus HOM05D007725 ORTHO05D009774 1.4e-55 221.5 463 59.2
Sopen12g007550 Solanum pennellii HOM05D007725 ORTHO05D009774 2.4e-55 220.7 458 56.1
Lj1P886T16 Lonicera japonica HOM05D007725 ORTHO05D009774 2.7e-54 217.2 461 60.7
Nitab4.5_0002517g0030 Nicotiana tabacum HOM05D007725 ORTHO05D009774 2.7e-54 217.2 479 52.4
CSS0027076 Camellia sinensis var. sinensis HOM05D007725 ORTHO05D009774 4.5e-54 216.5 463 53.1
PGSC0003DMG402029798 Solanum tuberosum HOM05D007725 ORTHO05D009774 7.7e-54 215.7 458 55.9
Solyc12g015650.3 Solanum lycopersicum HOM05D007725 ORTHO05D009774 1.5e-52 211.5 458 55.2
GSVIVG01037783001 Vitis vinifera HOM05D007725 ORTHO05D009774 4.2e-52 209.9 458 54.4
MELO3C024908.2 Cucumis melo HOM05D007725 ORTHO05D009774 2.1e-51 207.6 447 57.5
Psat5g175640 Pisum sativum HOM05D007725 ORTHO05D009774 4.7e-51 206.5 466 60.3
Ciclev10008214m.g Citrus clementina HOM05D007725 ORTHO05D009774 1.8e-50 204.5 468 56.0
GSVIVG01037784001 Vitis vinifera HOM05D007725 ORTHO05D009774 5.2e-50 203.0 466 56.0
Medtr3g056580 Medicago truncatula HOM05D007725 ORTHO05D009774 6.8e-50 202.6 459 43.8
CsaV3_7G018510 Cucumis sativus L. HOM05D007725 ORTHO05D009774 2.0e-49 201.1 471 58.2
Cfa020227 Carpinus fangiana HOM05D007725 ORTHO05D009774 4.4e-49 199.9 479 55.7
Cpa.g.sc12.189 Carica papaya HOM05D007725 ORTHO05D009774 5.7e-49 199.5 480 55.2
Haze_09790 Corylus avellana HOM05D007725 ORTHO05D009774 7.5e-49 199.1 475 58.9
Nitab4.5_0000163g0300 Nicotiana tabacum HOM05D007725 ORTHO05D009774 7.5e-49 199.1 479 56.4
Cc05_g14730 Coffea canephora HOM05D007725 ORTHO05D009774 1.7e-48 198.0 460 58.9
Gohir.D11G287700 Gossypium hirsutum HOM05D007725 ORTHO05D009774 3.1e-47 193.7 464 40.1
arahy.Tifrunner.gnm1.ann1.TWJV4J Arachis hypogaea HOM05D007725 ORTHO05D009774 1.7e-45 188.0 443 56.2
arahy.Tifrunner.gnm1.ann1.LCTM2T Arachis hypogaea HOM05D007725 ORTHO05D009774 5.0e-45 186.4 443 56.9
Nn1g03245 Nelumbo nucifera HOM05D007725 ORTHO05D009774 6.6e-45 186.0 465 52.3
PSO478G1598 Papaver somniferum HOM05D007725 ORTHO05D009774 2.5e-44 184.1 470 54.9
Hma1.2p1_2796F.1_g328670 Hydrangea macrophylla HOM05D007725 ORTHO05D009774 3.3e-44 183.7 462 58.0
Sed0002917 Sechium edule HOM05D007725 ORTHO05D009774 9.5e-44 182.2 463 56.4
Ca_26464_v3 Cicer arietinum L. HOM05D007725 ORTHO05D009774 1.2e-43 181.8 460 48.3
arahy.Tifrunner.gnm1.ann1.Q8DMES Arachis hypogaea HOM05D007725 ORTHO05D009774 4.7e-43 179.9 443 58.9
Manes.03G138100 Manihot esculenta HOM05D007725 ORTHO05D009774 6.1e-43 179.5 457 58.4
HanXRQChr11g0333971 Helianthus annuus HOM05D007725 ORTHO05D009774 8.0e-43 179.1 459 45.1
TAR624G0507 Trochodendron aralioides HOM05D007725 ORTHO05D009774 1.8e-42 177.9 481 55.9
Nn1g07446 Nelumbo nucifera HOM05D007725 ORTHO05D009774 8.9e-42 175.6 480 45.6
Dinv10315 Davidia involucrata HOM05D007725 ORTHO05D009774 4.4e-41 173.3 351 55.3
Nn1g03425 Nelumbo nucifera HOM05D007725 ORTHO05D009774 1.7e-40 171.4 444 58.3
Phvul.006G053700 Phaseolus vulgaris HOM05D007725 ORTHO05D009774 4.1e-39 166.8 358 62.3
EL10Ac4g07611 Beta vulgaris HOM05D007725 ORTHO05D009774 1.6e-38 164.9 350 52.6
TPR.G1953 Trifolium pratense HOM05D007725 ORTHO05D009774 1.7e-37 161.4 468 29.7
QL08p005480 Quercus lobata HOM05D007725 ORTHO05D009774 5.0e-37 159.8 478 49.6
MSTRG.15782 Avicennia marina HOM05D007725 ORTHO05D009774 3.3e-36 157.1 466 56.0
Lj6g0016094 Lotus japonicus HOM05D007725 ORTHO05D009774 1.6e-35 154.8 456 54.2
DCAR_022605 Daucus carota HOM05D007725 ORTHO05D009774 1.1e-34 152.1 451 43.9
SEGI_22467 Sequoiadendron giganteum HOM05D007725 ORTHO05D009774 1.5e-33 148.3 323 54.8
Migut.M01753 Erythranthe guttata HOM05D007725 ORTHO05D009774 3.4e-33 147.1 456 56.8
PGR031G2940 Punica granatum HOM05D007725 ORTHO05D009774 3.4e-33 147.1 448 44.4
Lj6g0024671 Lotus japonicus HOM05D007725 ORTHO05D009774 5.8e-33 146.4 454 53.3
AUR62017062 Chenopodium quinoa HOM05D007725 ORTHO05D009774 6.4e-32 142.9 345 48.7
Lj2g0017250 Lotus japonicus HOM05D007725 ORTHO05D009774 8.3e-32 142.5 454 38.1
AUR62040655 Chenopodium quinoa HOM05D007725 ORTHO05D009774 7.0e-31 139.4 360 48.1
SGA_v2.0_scaffold168G38532 Striga asiatica HOM05D007725 ORTHO05D009774 2.0e-30 137.9 360 31.9
Lj6g0003901 Lotus japonicus HOM05D007725 ORTHO05D009774 3.5e-30 137.1 349 50.1
ATR1149G149 Amborella trichopoda HOM05D007725 ORTHO05D009774 4.6e-30 136.7 456 53.7
Oeu005490.1 Olea europaea HOM05D007725 ORTHO05D009774 5.0e-29 133.3 214 40.2
SalBow8G2031 Salvia bowleyana HOM05D007725 ORTHO05D009774 2.3e-26 124.4 424 58.0
COL.COLO4_09793 Corchorus olitorius HOM05D007725 ORTHO05D009774 5.2e-26 123.2 188 41.0
C04p21250 Brassica napus HOM05D007725 ORTHO05D009774 4.9e-24 116.7 104 61.5
BcaC02g11621 Brassica carinata HOM05D007725 ORTHO05D009774 3.1e-18 97.4 66 77.3
Thecc.07G022000 Theobroma cacao HOM05D007725 ORTHO05D009774 1.5e-17 95.1 176 37.5
HPP92_006089 Vanilla planifolia HOM05D007725 ORTHO05D009774 5.8e-17 93.2 184 48.9
BcaC02g11617 Brassica carinata HOM05D007725 ORTHO05D009774 4.1e-15 87.0 50 88.0
TPR.G1910 Trifolium pratense HOM05D007725 ORTHO05D009774 6.0e-14 83.2 69 62.3
BcaB06g26090 Brassica carinata HOM05D007725 ORTHO05D009774 1.4e-07 62.0 37 86.5


User provided reference genes

Program Settings