Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19054 Brassica carinata HOM05D007107 ORTHO05D009198 1.0e-51 206.5 104 100.0
AL3G33050 Arabidopsis lyrata HOM05D007107 ORTHO05D009198 1.5e-26 122.9 94 75.5
Thhalv10021824m.g Eutrema salsugineum HOM05D007107 ORTHO05D009198 1.3e-25 119.8 93 74.2
Carub.0003s1948 Capsella rubella HOM05D007107 ORTHO05D009198 2.1e-25 119.0 94 73.4
BraA03t13287Z Brassica rapa HOM05D007107 ORTHO05D009198 6.2e-25 117.5 95 74.7
AT3G19615 Arabidopsis thaliana HOM05D007107 ORTHO05D009198 8.2e-25 117.1 94 72.3
BcaC09g48926 Brassica carinata HOM05D007107 ORTHO05D009198 1.4e-24 116.3 96 72.9
C01p44500 Brassica napus HOM05D007107 ORTHO05D009198 1.4e-24 116.3 96 72.9
BolC1t04415H Brassica oleracea HOM05D007107 ORTHO05D009198 1.4e-24 116.3 96 72.9
A03p41330 Brassica napus HOM05D007107 ORTHO05D009198 2.4e-24 115.5 95 73.7
CARHR095070 Cardamine hirsuta HOM05D007107 ORTHO05D009198 6.9e-24 114.0 103 65.0
BcaC01g03614 Brassica carinata HOM05D007107 ORTHO05D009198 1.2e-23 113.2 95 71.6
C03p50490 Brassica napus HOM05D007107 ORTHO05D009198 1.2e-23 113.2 95 71.6
A01p35080 Brassica napus HOM05D007107 ORTHO05D009198 4.5e-23 111.3 96 70.8
BraA01t03589Z Brassica rapa HOM05D007107 ORTHO05D009198 4.5e-23 111.3 96 70.8
BcaB04g20690 Brassica carinata HOM05D007107 ORTHO05D009198 2.9e-22 108.6 95 68.4
C05p45210 Brassica napus HOM05D007107 ORTHO05D009198 3.8e-22 108.2 84 73.8
BolC3t17339H Brassica oleracea HOM05D007107 ORTHO05D009198 3.8e-22 108.2 96 70.8
BcaB06g26031 Brassica carinata HOM05D007107 ORTHO05D009198 1.9e-21 105.9 105 61.0
BcaC05g28441 Brassica carinata HOM05D007107 ORTHO05D009198 2.5e-13 79.0 62 72.6
Gohir.A13G046600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 7.9e-12 73.9 84 54.8
Nn5g30571 Nelumbo nucifera HOM05D007107 ORTHO05D009198 1.4e-11 73.2 70 61.4
Gohir.D13G042600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.1e-10 70.1 84 53.6
Gorai.013G050500 Gossypium raimondii HOM05D007107 ORTHO05D009198 1.1e-10 70.1 84 53.6
Gohir.D12G020100 Gossypium hirsutum HOM05D007107 ORTHO05D009198 4.3e-10 68.2 83 54.2
Gohir.A12G019900 Gossypium hirsutum HOM05D007107 ORTHO05D009198 5.7e-10 67.8 83 54.2
Gorai.008G020500 Gossypium raimondii HOM05D007107 ORTHO05D009198 5.7e-10 67.8 78 56.4
Potri.001G294800 Populus trichocarpa HOM05D007107 ORTHO05D009198 5.7e-10 67.8 58 62.1
Thecc.02G116600 Theobroma cacao HOM05D007107 ORTHO05D009198 7.4e-10 67.4 70 57.1
Duzib132G0703 Durio zibethinus HOM05D007107 ORTHO05D009198 1.3e-09 66.6 69 56.5
COL.COLO4_32518 Corchorus olitorius HOM05D007107 ORTHO05D009198 1.7e-09 66.2 75 56.0
CsaV3_4G000330 Cucumis sativus L. HOM05D007107 ORTHO05D009198 1.7e-09 66.2 65 55.4
MELO3C018001.2 Cucumis melo HOM05D007107 ORTHO05D009198 2.2e-09 65.9 76 51.3
CiPaw.05G017500 Carya illinoinensis HOM05D007107 ORTHO05D009198 2.8e-09 65.5 87 51.7
Duzib248G0453 Durio zibethinus HOM05D000446 ORTHO05D000321 4.8e-09 64.7 70 55.7
CSS0046981 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 6.3e-09 64.3 67 56.7
Ciclev10029615m.g Citrus clementina HOM05D007107 ORTHO05D009198 6.3e-09 64.3 58 58.6
Oeu010443.1 Olea europaea HOM05D007107 ORTHO05D009198 6.3e-09 64.3 95 46.3
Haze_10225 Corylus avellana HOM05D007107 ORTHO05D009198 8.2e-09 63.9 95 46.3
Duzib248G0083 Durio zibethinus HOM05D007107 ORTHO05D009198 8.2e-09 63.9 70 55.7
THA.LOC104826494 Tarenaya hassleriana HOM05D007107 ORTHO05D009198 8.2e-09 63.9 92 48.9
Atru.chr5.2359 Acer truncatum HOM05D007107 ORTHO05D009198 1.8e-08 62.8 95 43.2
Cfa004630 Carpinus fangiana HOM05D007107 ORTHO05D009198 1.8e-08 62.8 97 48.5
TAR628G1630 Trochodendron aralioides HOM05D007107 ORTHO05D009198 1.8e-08 62.8 79 53.2
MD10G1105100 Malus domestica HOM05D007107 ORTHO05D009198 6.9e-08 60.8 62 56.5
Aa31LG8G6390 Aethionema arabicum HOM05D007107 ORTHO05D009198 9.1e-08 60.5 60 58.3
Manes.07G058800 Manihot esculenta HOM05D007107 ORTHO05D009198 9.1e-08 60.5 96 43.8
Prupe.8G144000 Prunus persica HOM05D007107 ORTHO05D009198 9.1e-08 60.5 59 62.7
FAN15G2005 Fragaria x ananassa HOM05D007107 ORTHO05D025431 1.2e-07 60.1 70 52.9
Peaxi162Scf00016g02820 Petunia axillaris HOM05D007107 ORTHO05D009198 1.2e-07 60.1 67 53.7
RcHm_v2.0_Chr6g0253681 Rosa chinensis HOM05D007107 ORTHO05D009198 1.2e-07 60.1 70 54.3
ClCG10G010430 Citrullus lanatus HOM05D007107 ORTHO05D009198 2.0e-07 59.3 65 50.8
Lsat_1_v5_gn_5_114201 Lactuca sativa HOM05D007107 ORTHO05D009198 2.6e-07 58.9 86 47.7
TAR376G0510 Trochodendron aralioides HOM05D007107 ORTHO05D009198 2.6e-07 58.9 81 50.6
Nitab4.5_0001105g0070 Nicotiana tabacum HOM05D007107 ORTHO05D009198 3.4e-07 58.5 64 50.0
Lsat_1_v5_gn_9_111721 Lactuca sativa HOM05D007107 ORTHO05D009198 4.5e-07 58.2 85 48.2
Nitab4.5_0008075g0020 Nicotiana tabacum HOM05D007107 ORTHO05D009198 4.5e-07 58.2 64 50.0
Oeu009671.1 Olea europaea HOM05D007107 ORTHO05D009198 4.5e-07 58.2 80 50.0
PGR042G2158 Punica granatum HOM05D007107 ORTHO05D009198 5.9e-07 57.8 92 42.4
Solyc01g107100.3 Solanum lycopersicum HOM05D007107 ORTHO05D009198 5.9e-07 57.8 101 44.6
Ah.09g231830 Amaranthus hybridus HOM05D007107 ORTHO05D009198 7.7e-07 57.4 63 55.6
FvH4_2g04290 Fragaria vesca HOM05D007107 ORTHO05D009198 1.3e-06 56.6 70 51.4
FAN24G0068 Fragaria x ananassa HOM05D007107 ORTHO05D009198 1.3e-06 56.6 70 51.4
Glyma.10G257200 Glycine max HOM05D007107 ORTHO05D009198 1.3e-06 56.6 59 57.6
Glyma.20G134000 Glycine max HOM05D007107 ORTHO05D009198 1.3e-06 56.6 59 57.6
Phvul.007G045200 Phaseolus vulgaris HOM05D007107 ORTHO05D009198 1.3e-06 56.6 60 56.7
Solyc01g107090.2 Solanum lycopersicum HOM05D007107 ORTHO05D009198 1.7e-06 56.2 57 54.4
Sopen01g049360 Solanum pennellii HOM05D007107 ORTHO05D009198 1.7e-06 56.2 57 54.4
ECA234G2040 Erigeron canadensis HOM05D007107 ORTHO05D009198 2.2e-06 55.8 87 47.1
Lalb_Chr06g0165131 Lupinus albus HOM05D007107 ORTHO05D009198 2.2e-06 55.8 69 52.2
FAN20G1224 Fragaria x ananassa HOM05D007107 ORTHO05D009198 3.8e-06 55.1 70 50.0
Sopen01g049370 Solanum pennellii HOM05D007107 ORTHO05D009198 3.8e-06 55.1 101 43.6
Aqoxy5G00877 Aquilegia oxysepala HOM05D007107 ORTHO05D009198 5.0e-06 54.7 97 42.3
RcHm_v2.0_Chr6g0253721 Rosa chinensis HOM05D007107 ORTHO05D009198 6.5e-06 54.3 71 50.7
Cpa.g.sc106.53 Carica papaya HOM05D007107 ORTHO05D009198 8.5e-06 53.9 73 50.7
Sc08g0004510 Simmondsia chinensis HOM05D007107 ORTHO05D009198 8.5e-06 53.9 71 49.3


User provided reference genes

Program Settings