Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18974 Brassica carinata HOM05D006794 ORTHO05D008322 1.3e-98 363.2 202 100.0
BcaC01g03720 Brassica carinata HOM05D006794 ORTHO05D008322 4.0e-92 341.7 207 94.2
C03p49310 Brassica napus HOM05D006794 ORTHO05D008322 1.2e-91 340.1 207 94.7
A03p40470 Brassica napus HOM05D006794 ORTHO05D008322 5.7e-91 337.8 206 92.7
BcaC09g48759 Brassica carinata HOM05D006794 ORTHO05D008322 2.9e-79 298.9 211 78.2
C01p46200 Brassica napus HOM05D006794 ORTHO05D008322 2.9e-79 298.9 211 78.2
BolC1t04582H Brassica oleracea HOM05D006794 ORTHO05D008322 2.9e-79 298.9 211 78.2
Sp3g16080 Schrenkiella parvula HOM05D006794 ORTHO05D008322 7.2e-78 294.3 211 78.2
Thhalv10021515m.g Eutrema salsugineum HOM05D006794 ORTHO05D008322 4.7e-69 265.0 213 79.8
BraA01t03709Z Brassica rapa HOM05D006794 ORTHO05D008322 9.8e-67 257.3 213 77.0
BcaB04g20803 Brassica carinata HOM05D006794 ORTHO05D008322 8.3e-66 254.2 212 77.4
A01p36460 Brassica napus HOM05D006794 ORTHO05D008322 2.7e-64 249.2 216 75.9
Carub.0003s1768 Capsella rubella HOM05D006794 ORTHO05D008322 1.7e-63 246.5 211 77.3
AL3G31120 Arabidopsis lyrata HOM05D006794 ORTHO05D008322 3.4e-59 232.3 215 74.0
CARHR093280 Cardamine hirsuta HOM05D006794 ORTHO05D008322 1.5e-54 216.9 187 74.9
AT3G17950 Arabidopsis thaliana HOM05D006794 ORTHO05D008322 1.8e-44 183.3 182 70.9
THA.LOC104825595 Tarenaya hassleriana HOM05D006794 ORTHO05D008322 1.4e-41 173.7 208 53.8
QL10p030576 Quercus lobata HOM05D006794 ORTHO05D008322 1.6e-37 160.2 208 51.4
CiPaw.15G144200 Carya illinoinensis HOM05D006794 ORTHO05D008322 1.1e-36 157.5 214 51.4
Duzib068G0617 Durio zibethinus HOM05D006794 ORTHO05D008322 2.9e-34 149.4 218 50.5
Thecc.03G058000 Theobroma cacao HOM05D006794 ORTHO05D008322 4.9e-34 148.7 219 51.1
CiPaw.16G095900 Carya illinoinensis HOM05D006794 ORTHO05D008322 6.4e-34 148.3 214 49.1
Cpa.g.sc3.383 Carica papaya HOM05D006794 ORTHO05D008322 8.4e-34 147.9 216 56.0
Dinv08202 Davidia involucrata HOM05D006794 ORTHO05D008322 4.2e-33 145.6 207 56.0
Gorai.008G290400 Gossypium raimondii HOM05D006794 ORTHO05D008322 7.1e-33 144.8 218 48.2
GSVIVG01008463001 Vitis vinifera HOM05D006794 ORTHO05D008322 1.6e-32 143.7 209 50.2
Duzib084G0148 Durio zibethinus HOM05D006794 ORTHO05D008322 2.7e-32 142.9 214 49.5
Cfa021396 Carpinus fangiana HOM05D006794 ORTHO05D008322 4.6e-32 142.1 219 51.6
CSS0048798 Camellia sinensis var. sinensis HOM05D006794 ORTHO05D008322 1.0e-31 141.0 218 54.6
Lalb_Chr22g0353521 Lupinus albus HOM05D006794 ORTHO05D008322 3.9e-31 139.0 209 53.6
Glyma.09G174700 Glycine max HOM05D006794 ORTHO05D008322 1.1e-30 137.5 213 53.1
PGR083G0475 Punica granatum HOM05D006794 ORTHO05D008322 1.5e-30 137.1 216 55.6
TWI81G0550 Tripterygium wilfordii HOM05D006794 ORTHO05D008322 1.5e-30 137.1 219 50.7
Cc04_g06140 Coffea canephora HOM05D006794 ORTHO05D008322 2.5e-30 136.3 217 53.0
FvH4_5g17460 Fragaria vesca HOM05D006794 ORTHO05D008322 3.3e-30 136.0 213 53.5
FAN18G3906 Fragaria x ananassa HOM05D006794 ORTHO05D008322 3.3e-30 136.0 213 53.5
Medtr6g069830 Medicago truncatula HOM05D006794 ORTHO05D008322 3.3e-30 136.0 206 52.9
Phvul.002G330800 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 5.6e-30 135.2 208 54.8
Atru.chr9.1672 Acer truncatum HOM05D006794 ORTHO05D008322 9.6e-30 134.4 222 45.0
Psat4g000080 Pisum sativum HOM05D006794 ORTHO05D008322 1.6e-29 133.7 198 49.5
RcHm_v2.0_Chr7g0178231 Rosa chinensis HOM05D006794 ORTHO05D008322 1.6e-29 133.7 213 53.5
arahy.Tifrunner.gnm1.ann1.AT27RE Arachis hypogaea HOM05D006794 ORTHO05D008322 2.1e-29 133.3 205 54.1
FAN13G2800 Fragaria x ananassa HOM05D006794 ORTHO05D008322 2.1e-29 133.3 213 49.3
Lalb_Chr16g0386961 Lupinus albus HOM05D006794 ORTHO05D008322 2.8e-29 132.9 208 48.1
ClCG04G010570 Citrullus lanatus HOM05D006794 ORTHO05D008322 3.6e-29 132.5 210 50.0
TAR622G0128 Trochodendron aralioides HOM05D006794 ORTHO05D008322 3.6e-29 132.5 200 54.5
Sopen03g037580 Solanum pennellii HOM05D006794 ORTHO05D008322 4.8e-29 132.1 214 53.7
MBI19_g22477_MAGBIO Magnolia biondii HOM05D006794 ORTHO05D008322 6.2e-29 131.7 205 48.8
Nn4g24277 Nelumbo nucifera HOM05D006794 ORTHO05D008322 6.2e-29 131.7 214 53.7
Sabra15G0031400 Salix brachista HOM05D006794 ORTHO05D008322 8.1e-29 131.3 216 49.5
arahy.Tifrunner.gnm1.ann1.PNUX28 Arachis hypogaea HOM05D006794 ORTHO05D008322 1.1e-28 131.0 205 53.7
CANSAT80G2635 Cannabis sativa HOM05D006794 ORTHO05D008322 1.4e-28 130.6 225 50.7
Phvul.004G150000 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 1.4e-28 130.6 214 50.9
Potri.012G045700 Populus trichocarpa HOM05D006794 ORTHO05D008322 1.4e-28 130.6 217 51.6
VMungo0251G1205 Vigna mungo HOM05D006794 ORTHO05D008322 1.4e-28 130.6 207 55.1
Solyc03g118630.3 Solanum lycopersicum HOM05D006794 ORTHO05D008322 2.4e-28 129.8 214 53.3
CANSAT80G0659 Cannabis sativa HOM05D006794 ORTHO05D008322 3.1e-28 129.4 227 51.5
TPR.G8635 Trifolium pratense HOM05D006794 ORTHO05D008322 3.1e-28 129.4 212 52.4
VMungo0464G2014 Vigna mungo HOM05D006794 ORTHO05D008322 4.0e-28 129.0 214 50.5
MD14G1237200 Malus domestica HOM05D006794 ORTHO05D008322 1.2e-27 127.5 222 51.4
Sed0017400 Sechium edule HOM05D000034 ORTHO05D000037 1.2e-27 127.5 203 50.7
Prupe.5G234500 Prunus persica HOM05D006794 ORTHO05D008322 1.5e-27 127.1 208 51.9
Glyma.08G055100 Glycine max HOM05D006794 ORTHO05D008322 2.0e-27 126.7 211 53.6
Lj2g0023485 Lotus japonicus HOM05D006794 ORTHO05D008322 2.0e-27 126.7 204 53.9
MD06G1228000 Malus domestica HOM05D006794 ORTHO05D008322 2.0e-27 126.7 221 50.7
Manes.06G005000 Manihot esculenta HOM05D006794 ORTHO05D008322 3.4e-27 125.9 208 44.2
Eucgr.B00988 Eucalyptus grandis HOM05D006794 ORTHO05D008322 4.5e-27 125.6 220 50.0
Sed0024550 Sechium edule HOM05D006794 ORTHO05D008322 7.6e-27 124.8 209 50.7
Hma1.2p1_0163F.1_g073020 Hydrangea macrophylla HOM05D006794 ORTHO05D008322 9.9e-27 124.4 213 53.1
Oeu046160.1 Olea europaea HOM05D006794 ORTHO05D008322 9.9e-27 124.4 216 45.4
PGSC0003DMG400005675 Solanum tuberosum HOM05D006794 ORTHO05D008322 1.3e-26 124.0 221 53.4
Nitab4.5_0001264g0020 Nicotiana tabacum HOM05D006794 ORTHO05D008322 2.2e-26 123.2 221 50.2
Potri.015G036900 Populus trichocarpa HOM05D006794 ORTHO05D008322 2.2e-26 123.2 219 50.7
FAN08G0189 Fragaria x ananassa HOM05D006794 ORTHO05D008322 2.9e-26 122.9 210 52.4
arahy.Tifrunner.gnm1.ann1.KQ26AL Arachis hypogaea HOM05D006794 ORTHO05D008322 3.8e-26 122.5 194 48.5
arahy.Tifrunner.gnm1.ann1.P2R0G6 Arachis hypogaea HOM05D006794 ORTHO05D008322 3.8e-26 122.5 194 48.5
Aa31LG8G4820 Aethionema arabicum HOM05D006794 ORTHO05D008322 6.4e-26 121.7 197 44.7
FAN04G0930 Fragaria x ananassa HOM05D006794 ORTHO05D008322 8.4e-26 121.3 213 51.6
C05p26280 Brassica napus HOM05D006794 ORTHO05D008322 3.2e-25 119.4 101 69.3
PSO210G4985 Papaver somniferum HOM05D006794 ORTHO05D008322 4.6e-24 115.5 220 39.5
Migut.D01320 Erythranthe guttata HOM05D006794 ORTHO05D008322 1.0e-23 114.4 204 46.1
HanXRQChr01g0012541 Helianthus annuus HOM05D006794 ORTHO05D008322 1.8e-23 113.6 209 46.9
Lj4g0014763 Lotus japonicus HOM05D006794 ORTHO05D008322 2.3e-23 113.2 196 45.4
Lsat_1_v5_gn_5_175480 Lactuca sativa HOM05D006794 ORTHO05D008322 1.9e-22 110.2 199 42.2
PSO832G1236 Papaver somniferum HOM05D006794 ORTHO05D008322 3.3e-22 109.4 220 37.7
MD01G1007300 Malus domestica HOM05D006794 ORTHO05D008322 1.4e-20 104.0 223 40.8
DCAR_013026 Daucus carota HOM05D006794 ORTHO05D008322 1.8e-20 103.6 207 46.9
Rhsim12G0138200 Rhododendron simsii HOM05D006919 ORTHO05D008705 5.3e-20 102.1 186 52.7
ECA248G0187 Erigeron canadensis HOM05D006794 ORTHO05D008322 4.5e-19 99.0 205 46.8
vmacro16409 Vaccinium macrocarpon HOM05D006794 ORTHO05D008322 1.6e-16 90.5 184 47.8
Ca_17183_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 1.8e-15 87.0 107 52.3
Gohir.A12G269600 Gossypium hirsutum HOM05D006794 ORTHO05D008322 2.3e-15 86.7 174 41.4
Haze_18880 Corylus avellana HOM05D006794 ORTHO05D008322 3.0e-15 86.3 174 44.3
MELO3C002138.2 Cucumis melo HOM05D006794 ORTHO05D008322 3.0e-15 86.3 106 52.8
COL.COLO4_04996 Corchorus olitorius HOM05D006794 ORTHO05D008322 5.1e-15 85.5 176 48.3
Gohir.D12G270100 Gossypium hirsutum HOM05D006794 ORTHO05D008322 1.1e-14 84.3 174 39.7
HPP92_008000 Vanilla planifolia HOM05D006794 ORTHO05D008322 1.9e-14 83.6 207 40.1
Glyma.07G103100 Glycine max HOM05D006794 ORTHO05D008322 5.7e-14 82.0 86 57.0
Ca_25344_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 7.4e-14 81.6 86 57.0
SalBow1G0629 Salvia bowleyana HOM05D006794 ORTHO05D008322 3.7e-13 79.3 191 48.2
Sabra12G0031800 Salix brachista HOM05D006794 ORTHO05D008322 6.2e-13 78.6 91 52.7
Psat1g031080 Pisum sativum HOM05D006794 ORTHO05D008322 1.1e-12 77.8 170 48.2
Nitab4.5_0010223g0030 Nicotiana tabacum HOM05D006794 ORTHO05D008322 5.3e-12 75.5 220 43.2
SEGI_38129 Sequoiadendron giganteum HOM05D003527 ORTHO05D004099 6.9e-12 75.1 175 35.4
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 4.5e-11 72.4 201 33.8
Peaxi162Scf00314g00315 Petunia axillaris HOM05D006794 ORTHO05D008322 7.6e-11 71.6 113 47.8
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 2.2e-10 70.1 169 33.1
Ciclev10009814m.g Citrus clementina HOM05D006794 ORTHO05D008322 5.0e-10 68.9 87 48.3
ECA247G3528 Erigeron canadensis HOM05D003527 ORTHO05D004099 5.0e-10 68.9 183 32.8
CANSAT64G0030 Cannabis sativa HOM05D006794 ORTHO05D008322 6.5e-10 68.6 184 39.1
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 8.4e-10 68.2 175 35.4
Lsat_1_v5_gn_8_75920 Lactuca sativa HOM05D003527 ORTHO05D004099 2.5e-09 66.6 174 33.9
ECA236G2982 Erigeron canadensis HOM05D003527 ORTHO05D004099 5.5e-09 65.5 171 32.7
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 5.5e-09 65.5 191 34.6
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 1.2e-08 64.3 172 33.7
HanXRQChr08g0234711 Helianthus annuus HOM05D003527 ORTHO05D004099 2.1e-08 63.5 167 41.3
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 3.5e-08 62.8 173 32.9
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 4.6e-08 62.4 176 34.1
CDE05G2986 Ceratophyllum demersum HOM05D006794 ORTHO05D008322 6.1e-08 62.0 176 34.1
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 6.1e-08 62.0 178 33.1
Lsat_1_v5_gn_9_23221 Lactuca sativa HOM05D003527 ORTHO05D004099 7.9e-08 61.6 167 34.1
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 1.0e-07 61.2 169 33.7
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 1.3e-07 60.8 174 34.5
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 1.3e-07 60.8 166 33.7
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 1.3e-07 60.8 166 32.5
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 1.8e-07 60.5 166 31.9
DCAR_005975 Daucus carota HOM05D003527 ORTHO05D004099 1.8e-07 60.5 171 34.5
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 2.3e-07 60.1 178 33.1
Zm00001eb190230 Zea mays HOM05D006794 ORTHO05D008322 2.3e-07 60.1 193 33.7
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 3.0e-07 59.7 164 35.4
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 3.0e-07 59.7 169 34.9
CDE07G1050 Ceratophyllum demersum HOM05D006794 ORTHO05D008322 3.0e-07 59.7 72 51.4
AUR62001798 Chenopodium quinoa HOM05D003527 ORTHO05D004099 3.0e-07 59.7 178 33.7
ATR0559G115 Amborella trichopoda HOM05D003527 ORTHO05D004099 3.9e-07 59.3 161 32.9
AUR62009585 Chenopodium quinoa HOM05D003527 ORTHO05D004099 3.9e-07 59.3 167 34.7
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 3.9e-07 59.3 164 32.9
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 3.9e-07 59.3 164 32.9
Dinv16990 Davidia involucrata HOM05D003527 ORTHO05D004099 5.1e-07 58.9 168 31.5
Dinv42939 Davidia involucrata HOM05D003527 ORTHO05D004099 5.1e-07 58.9 168 31.5
Dinv43161 Davidia involucrata HOM05D003527 ORTHO05D004099 5.1e-07 58.9 168 31.5
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 5.1e-07 58.9 178 33.1
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 5.1e-07 58.9 35 85.7
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 6.7e-07 58.5 175 33.7
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 6.7e-07 58.5 41 70.7
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 6.7e-07 58.5 180 33.3
Oeu004474.1 Olea europaea HOM05D006794 ORTHO05D008322 8.7e-07 58.2 105 42.9
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 1.1e-06 57.8 170 31.2
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 1.5e-06 57.4 169 33.1
Nn2g15270 Nelumbo nucifera HOM05D006794 ORTHO05D008322 1.5e-06 57.4 134 38.8
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 1.5e-06 57.4 35 82.9
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 1.9e-06 57.0 36 75.0
CiPaw.13G095400 Carya illinoinensis HOM05D003527 ORTHO05D004099 2.5e-06 56.6 168 33.3
Sabra16G0144000 Salix brachista HOM05D003527 ORTHO05D004099 3.3e-06 56.2 174 33.9
Cpa.g.sc81.162 Carica papaya HOM05D003527 ORTHO05D004099 4.3e-06 55.8 35 80.0
Migut.J00336 Erythranthe guttata HOM05D003527 ORTHO05D004099 5.7e-06 55.5 35 80.0
PSO339G4025 Papaver somniferum HOM05D003527 ORTHO05D004099 5.7e-06 55.5 38 71.1
RcHm_v2.0_Chr5g0064221 Rosa chinensis HOM05D003527 ORTHO05D004099 5.7e-06 55.5 170 35.3
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 5.7e-06 55.5 170 31.8
Thecc.05G040900 Theobroma cacao HOM05D003527 ORTHO05D004099 5.7e-06 55.5 123 38.2
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 7.4e-06 55.1 36 75.0
Sabra09G0021000 Salix brachista HOM05D003527 ORTHO05D004099 7.4e-06 55.1 177 33.3
Gohir.D11G345500 Gossypium hirsutum HOM05D003527 ORTHO05D004099 9.7e-06 54.7 36 80.6
Lj2A96T67 Lonicera japonica HOM05D003527 ORTHO05D004099 9.7e-06 54.7 35 77.1
TWI79G0031 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 9.7e-06 54.7 172 31.4


User provided reference genes

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