Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1510.0 804 100.0
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1360.1 836 89.1
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 0.0e+00 1349.0 836 89.0
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 0.0e+00 1346.3 839 88.2
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 0.0e+00 1343.6 852 85.2
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 0.0e+00 1310.4 842 83.0
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 0.0e+00 1309.7 850 83.6
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 0.0e+00 1295.0 843 82.2
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 0.0e+00 1288.5 841 81.6
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 0.0e+00 1278.8 841 81.0
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1268.1 825 86.1
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1251.1 850 80.7
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1224.5 849 80.7
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1224.5 849 81.2
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 0.0e+00 1219.9 849 80.9
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1211.4 833 79.2
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 0.0e+00 1204.5 839 79.5
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 0.0e+00 1187.6 902 71.8
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1162.9 712 88.2
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 5.6e-307 1057.4 850 67.2
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 3.6e-245 852.0 872 55.8
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 8.8e-244 847.4 860 55.8
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 2.2e-242 842.8 867 55.6
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 2.8e-242 842.4 868 55.8
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 4.2e-238 828.6 854 55.0
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 7.2e-238 827.8 826 58.2
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 9.5e-238 827.4 825 58.3
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 1.6e-237 826.6 894 53.8
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 3.0e-236 822.4 867 53.7
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.2e-235 820.5 867 53.6
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 5.7e-235 818.1 827 57.7
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 6.3e-234 814.7 866 53.2
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 1.1e-233 813.9 823 56.7
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 2.4e-233 812.8 867 54.8
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 2.4e-233 812.8 861 54.7
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.0e-232 809.7 857 56.4
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 4.5e-232 808.5 975 49.7
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 4.5e-232 808.5 876 53.3
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 1.0e-231 807.4 858 54.1
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.3e-231 807.0 827 56.7
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 2.9e-231 805.8 827 56.6
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 3.9e-231 805.4 836 56.6
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 5.0e-231 805.1 860 54.7
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 1.5e-230 803.5 871 53.6
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 1.9e-230 803.1 871 53.0
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 2.5e-230 802.7 874 54.6
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 8.0e-229 797.7 865 54.6
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 3.4e-227 792.3 877 54.3
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 6.4e-226 788.1 882 51.4
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 7.0e-225 784.6 858 53.0
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 1.7e-223 780.0 913 52.5
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 3.0e-223 779.2 828 55.3
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 4.7e-221 771.9 827 54.1
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 4.7e-221 771.9 870 54.5
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 4.7e-221 771.9 878 52.1
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 6.2e-221 771.5 843 53.3
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 1.2e-219 767.3 870 52.9
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 1.5e-219 766.9 871 52.1
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 2.0e-219 766.5 864 51.4
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 5.8e-219 765.0 859 52.5
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 2.9e-218 762.7 865 53.2
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 3.7e-218 762.3 825 53.6
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 6.4e-218 761.5 771 56.7
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 7.1e-217 758.1 868 51.0
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 9.2e-217 757.7 864 51.4
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 4.6e-216 755.4 828 51.9
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 1.0e-215 754.2 866 50.6
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 1.7e-215 753.4 866 51.2
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 5.1e-215 751.9 881 51.0
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 6.6e-215 751.5 822 53.3
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 7.3e-214 748.0 815 52.6
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 9.5e-214 747.7 828 52.9
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 4.7e-213 745.3 888 49.5
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 1.4e-212 743.8 754 56.8
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 3.1e-212 742.7 837 53.8
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 2.0e-211 740.0 868 51.7
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 3.4e-211 739.2 851 52.1
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 7.5e-211 738.0 869 50.7
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 2.4e-209 733.0 829 52.0
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 7.8e-208 728.0 800 52.2
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 1.0e-207 727.6 824 52.1
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 3.0e-207 726.1 843 51.7
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 3.0e-207 726.1 761 54.0
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 1.5e-206 723.8 883 49.9
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 2.5e-206 723.0 866 50.5
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 7.3e-206 721.5 834 50.7
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 8.1e-205 718.0 735 57.1
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 1.1e-204 717.6 830 53.1
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 3.4e-203 712.6 766 53.7
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 4.4e-203 712.2 874 50.5
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 5.8e-203 711.8 780 52.9
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 2.2e-202 709.9 912 47.0
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 8.4e-202 708.0 832 50.2
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 1.2e-200 704.1 829 49.9
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 2.7e-200 703.0 847 50.4
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 4.6e-200 702.2 869 49.3
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 2.3e-199 699.9 798 51.1
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 2.5e-198 696.4 697 56.4
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 7.3e-198 694.9 768 54.2
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 2.8e-197 693.0 825 49.9
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.5e-195 687.2 845 49.8
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 5.8e-195 685.3 851 47.9
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 9.9e-195 684.5 551 67.9
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 3.8e-194 682.6 847 49.2
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 3.3e-190 669.5 833 48.3
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 1.3e-189 667.5 764 52.0
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 1.6e-189 667.2 901 46.6
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 5.3e-188 662.1 711 53.4
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 1.2e-187 661.0 776 51.7
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 3.8e-178 629.4 880 43.1
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 1.1e-177 627.9 839 44.9
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 2.5e-177 626.7 762 49.3
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 3.2e-177 626.3 715 52.2
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 1.3e-173 614.4 722 51.2
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 9.3e-169 598.2 856 45.4
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 3.0e-167 593.2 611 54.3
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 2.4e-164 583.6 800 46.0
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 3.1e-164 583.2 859 43.8
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 7.7e-163 578.6 549 57.6
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 5.7e-150 535.8 456 65.6
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 4.8e-149 532.7 804 44.0
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 5.9e-147 525.8 859 41.3
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 1.7e-146 524.2 880 40.7
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 2.3e-143 513.8 775 42.1
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 3.3e-142 510.0 786 42.1
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 2.3e-135 487.3 824 42.1
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 2.6e-134 483.8 918 38.5
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 8.3e-133 478.8 728 42.3
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 4.5e-131 473.0 705 40.6
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 1.0e-122 445.3 862 36.7
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 1.0e-119 435.3 584 46.7
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.7e-117 427.9 571 47.3
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 2.2e-109 401.0 607 43.0
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 8.1e-104 382.5 547 44.2
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 9.2e-100 369.0 800 34.2
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 6.4e-93 346.3 628 35.4
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 1.3e-90 338.6 405 51.4
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 4.0e-87 327.0 406 51.5
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 4.0e-87 327.0 406 51.5
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 2.9e-85 320.9 664 33.4
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 9.3e-84 315.8 422 47.6
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 2.5e-60 238.0 234 57.7
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 3.2e-60 237.7 212 62.3
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 5.5e-60 236.9 368 43.2
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 2.7e-59 234.6 278 51.1
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 4.6e-59 233.8 302 48.7
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.1e-56 224.9 247 56.7
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.3e-45 189.1 195 55.9
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 1.2e-43 182.6 265 45.7
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 4.1e-39 167.5 214 46.7
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 4.5e-38 164.1 178 56.2
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 1.9e-36 158.7 147 60.5
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 3.2e-36 157.9 125 69.6
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 4.7e-35 154.1 170 53.5
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 7.4e-33 146.7 140 55.0
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 8.0e-27 126.7 73 89.0
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 5.2e-26 124.0 213 42.3
BolC2t11814H Brassica oleracea HOM05D004054 ORTHO05D004945 1.1e-25 122.9 123 59.3
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 5.2e-18 97.4 191 36.1
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 9.1e-15 86.7 60 75.0
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 5.0e-13 80.9 116 39.7
BolC3t17207H Brassica oleracea HOM05D004054 ORTHO05D004945 6.5e-13 80.5 64 64.1
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 8.0e-11 73.6 48 79.2
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 8.0e-11 73.6 64 54.7
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 8.0e-11 73.6 59 57.6
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 2.3e-10 72.0 101 41.6
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 2.0e-09 68.9 219 24.2
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-08 65.1 47 63.8
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 5.4e-07 60.8 146 34.9
BolC1t01529H Brassica oleracea HOM05D016765 ORTHO05D042371 4.5e-06 57.8 65 49.2
Aqoxy4G02344 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 5.9e-06 57.4 69 47.8


User provided reference genes

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