Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18920 Brassica carinata HOM05D006322 ORTHO05D007716 1.9e-40 168.7 85 100.0
BcaB04g18915 Brassica carinata HOM05D001503 ORTHO05D003820 2.4e-30 135.2 144 56.9
BcaB04g18918 Brassica carinata HOM05D006322 ORTHO05D007716 2.4e-30 135.2 144 56.9
BcaB04g18916 Brassica carinata HOM05D006322 ORTHO05D007716 9.9e-29 129.8 158 51.9
BcaC01g03797 Brassica carinata HOM05D006322 ORTHO05D007716 9.9e-29 129.8 158 51.9
BolC3t17131H Brassica oleracea HOM05D006322 ORTHO05D007716 9.9e-29 129.8 158 51.9
C03p48530 Brassica napus HOM05D006322 ORTHO05D007716 2.4e-27 125.2 158 50.0
A03p40000 Brassica napus HOM05D006322 ORTHO05D007716 7.1e-27 123.6 155 50.3
BraA03t13148Z Brassica rapa HOM05D006322 ORTHO05D007716 1.6e-26 122.5 155 49.7
Sp3g15210 Schrenkiella parvula HOM05D006322 ORTHO05D007716 6.7e-25 117.1 158 47.5
Carub.0003s1674 Capsella rubella HOM05D006322 ORTHO05D007716 5.6e-24 114.0 156 46.2
Thhalv10021446m.g Eutrema salsugineum HOM05D006322 ORTHO05D007716 1.6e-23 112.5 156 46.2
AL3G29970 Arabidopsis lyrata HOM05D006322 ORTHO05D007716 3.7e-23 111.3 161 44.7
CARHR092240 Cardamine hirsuta HOM05D006322 ORTHO05D007716 8.2e-23 110.2 158 45.6
AT3G16990 Arabidopsis thaliana HOM05D006322 ORTHO05D007716 2.6e-21 105.1 158 44.3
Aa31LG8G4030 Aethionema arabicum HOM05D006322 ORTHO05D007716 7.6e-21 103.6 158 43.0
THA.LOC104802603 Tarenaya hassleriana HOM05D006322 ORTHO05D007716 5.5e-19 97.4 155 39.4
GSVIVG01035010001 Vitis vinifera HOM05D006322 ORTHO05D007716 6.9e-14 80.5 79 54.4
Manes.03G203000 Manihot esculenta HOM05D006322 ORTHO05D007716 2.0e-13 79.0 159 33.3
Dinv44297 Davidia involucrata HOM05D006322 ORTHO05D007716 3.4e-13 78.2 79 54.4
Solyc11g007570.2 Solanum lycopersicum HOM05D006322 ORTHO05D007716 4.5e-13 77.8 80 55.0
Duzib151G0960 Durio zibethinus HOM05D006322 ORTHO05D007716 7.7e-13 77.0 80 55.0
TAR636G2967 Trochodendron aralioides HOM05D006322 ORTHO05D007716 1.0e-12 76.6 79 50.6
QL06p011774 Quercus lobata HOM05D006322 ORTHO05D007716 1.3e-12 76.3 79 53.2
COL.COLO4_34636 Corchorus olitorius HOM05D006322 ORTHO05D007716 1.7e-12 75.9 81 50.6
PGR031G3552 Punica granatum HOM05D006322 ORTHO05D007716 1.7e-12 75.9 79 51.9
Aqoxy2G02768 Aquilegia oxysepala HOM05D006322 ORTHO05D007716 2.2e-12 75.5 79 51.9
Cfa015332 Carpinus fangiana HOM05D006322 ORTHO05D007716 2.9e-12 75.1 56 60.7
Haze_01283 Corylus avellana HOM05D006322 ORTHO05D007716 3.8e-12 74.7 79 50.6
Hma1.2p1_0078F.1_g040000 Hydrangea macrophylla HOM05D006322 ORTHO05D007716 3.8e-12 74.7 54 63.0
Lj4g0019910 Lotus japonicus HOM05D006322 ORTHO05D007716 3.8e-12 74.7 79 49.4
Nitab4.5_0002259g0050 Nicotiana tabacum HOM05D006322 ORTHO05D007716 6.5e-12 73.9 79 51.9
Peaxi162Scf00244g00413 Petunia axillaris HOM05D006322 ORTHO05D007716 6.5e-12 73.9 79 53.2
Atru.chr4.3025 Acer truncatum HOM05D006322 ORTHO05D007716 8.5e-12 73.6 80 51.2
PGSC0003DMG400027315 Solanum tuberosum HOM05D006322 ORTHO05D007716 1.1e-11 73.2 80 51.2
MSTRG.24817 Avicennia marina HOM05D006322 ORTHO05D007716 1.4e-11 72.8 79 48.1
CAN.G135.71 Capsicum annuum HOM05D006322 ORTHO05D007716 1.4e-11 72.8 79 49.4
Nitab4.5_0001807g0060 Nicotiana tabacum HOM05D006322 ORTHO05D007716 1.4e-11 72.8 74 54.1
VMungo1215G3118 Vigna mungo HOM05D006322 ORTHO05D007716 1.4e-11 72.8 54 61.1
Sopen11g003410 Solanum pennellii HOM05D006322 ORTHO05D007716 1.9e-11 72.4 80 51.2
Gohir.D09G235800 Gossypium hirsutum HOM05D006322 ORTHO05D007716 2.5e-11 72.0 80 51.2
EL10Ac3g05469 Beta vulgaris HOM05D006322 ORTHO05D007716 3.2e-11 71.6 79 50.6
Cpa.g.sc9.74 Carica papaya HOM05D006322 ORTHO05D007716 3.2e-11 71.6 79 48.1
Duzib052G0456 Durio zibethinus HOM05D006322 ORTHO05D007716 3.2e-11 71.6 73 52.1
Phvul.003G113400 Phaseolus vulgaris HOM05D006322 ORTHO05D007716 3.2e-11 71.6 54 59.3
Gohir.A09G235000 Gossypium hirsutum HOM05D006322 ORTHO05D007716 4.2e-11 71.2 80 51.2
Medtr4g121940 Medicago truncatula HOM05D006322 ORTHO05D007716 5.5e-11 70.9 80 50.0
EL10Ac7g16563 Beta vulgaris HOM05D006322 ORTHO05D007716 7.2e-11 70.5 76 51.3
Gorai.006G258900 Gossypium raimondii HOM05D006322 ORTHO05D007716 7.2e-11 70.5 80 50.0
Potri.008G106600 Populus trichocarpa HOM05D006322 ORTHO05D007716 7.2e-11 70.5 76 47.4
CiPaw.01G139400 Carya illinoinensis HOM05D006322 ORTHO05D007716 9.4e-11 70.1 57 59.6
AUR62041396 Chenopodium quinoa HOM05D006322 ORTHO05D007716 1.2e-10 69.7 79 48.1
Nn3g21692 Nelumbo nucifera HOM05D006322 ORTHO05D007716 1.2e-10 69.7 65 56.9
TWI09G0431 Tripterygium wilfordii HOM05D006322 ORTHO05D007716 1.2e-10 69.7 77 50.6
Thecc.04G298700 Theobroma cacao HOM05D006322 ORTHO05D007716 1.6e-10 69.3 80 51.2
Ah.13g071980 Amaranthus hybridus HOM05D006322 ORTHO05D007716 2.1e-10 68.9 54 55.6
ATR0796G257 Amborella trichopoda HOM05D006322 ORTHO05D007716 2.1e-10 68.9 60 53.3
arahy.Tifrunner.gnm1.ann1.57P81C Arachis hypogaea HOM05D006322 ORTHO05D007716 2.1e-10 68.9 54 55.6
arahy.Tifrunner.gnm1.ann1.WPA2XH Arachis hypogaea HOM05D006322 ORTHO05D007716 2.1e-10 68.9 54 55.6
CANSAT78G1173 Cannabis sativa HOM05D006322 ORTHO05D007716 2.1e-10 68.9 66 54.5
AUR62016124 Chenopodium quinoa HOM05D006322 ORTHO05D007716 2.7e-10 68.6 79 48.1
Eucgr.A00353 Eucalyptus grandis HOM05D006322 ORTHO05D007716 2.7e-10 68.6 56 57.1
Glyma.17G032700 Glycine max HOM05D006322 ORTHO05D007716 2.7e-10 68.6 54 57.4
Sc25g0003310 Simmondsia chinensis HOM05D006322 ORTHO05D007716 2.7e-10 68.6 65 52.3
TPR.G20694 Trifolium pratense HOM05D006322 ORTHO05D007716 3.6e-10 68.2 75 48.0
Lsat_1_v5_gn_6_16821 Lactuca sativa HOM05D006322 ORTHO05D007716 4.6e-10 67.8 82 48.8
Sabra08G0080400 Salix brachista HOM05D006322 ORTHO05D007716 4.6e-10 67.8 80 45.0
Atru.chr4.3023 Acer truncatum HOM05D006322 ORTHO05D007716 6.1e-10 67.4 66 53.0
Actinidia27045 Actinidia chinensis HOM05D006322 ORTHO05D007716 7.9e-10 67.0 74 51.4
Actinidia40367 Actinidia chinensis HOM05D006322 ORTHO05D007716 7.9e-10 67.0 74 51.4
Cc03_g00960 Coffea canephora HOM05D006322 ORTHO05D007716 7.9e-10 67.0 79 45.6
HanXRQChr13g0395571 Helianthus annuus HOM05D006322 ORTHO05D007716 7.9e-10 67.0 77 49.4
RcHm_v2.0_Chr4g0424801 Rosa chinensis HOM05D006322 ORTHO05D007716 7.9e-10 67.0 57 56.1
Glyma.07G240701 Glycine max HOM05D006322 ORTHO05D007716 1.0e-09 66.6 74 47.3
Ciclev10005751m.g Citrus clementina HOM05D006322 ORTHO05D007716 1.4e-09 66.2 66 54.5
Migut.N00046 Erythranthe guttata HOM05D006322 ORTHO05D007716 1.4e-09 66.2 79 44.3
MD16G1155500 Malus domestica HOM05D006322 ORTHO05D007716 1.4e-09 66.2 71 47.9
Rhsim04G0234900 Rhododendron simsii HOM05D006322 ORTHO05D007716 1.4e-09 66.2 79 45.6
Lalb_Chr13g0298441 Lupinus albus HOM05D006322 ORTHO05D007716 1.8e-09 65.9 82 45.1
Psat4g024200 Pisum sativum HOM05D006322 ORTHO05D007716 1.8e-09 65.9 80 46.2
Prupe.1G119400 Prunus persica HOM05D006322 ORTHO05D007716 1.8e-09 65.9 78 52.6
Lju470A16T21 Lonicera japonica HOM05D006322 ORTHO05D007716 2.3e-09 65.5 80 47.5
MBI19_g07237_MAGBIO Magnolia biondii HOM05D006322 ORTHO05D007716 2.3e-09 65.5 56 51.8
ECA233G0552 Erigeron canadensis HOM05D006322 ORTHO05D007716 3.0e-09 65.1 76 50.0
SalBow5G5236 Salvia bowleyana HOM05D006322 ORTHO05D007716 3.0e-09 65.1 79 43.0
DCAR_027007 Daucus carota HOM05D006322 ORTHO05D007716 3.9e-09 64.7 56 53.6
Psat4g024280 Pisum sativum HOM05D006322 ORTHO05D007716 3.9e-09 64.7 80 45.0
Actinidia15599 Actinidia chinensis HOM05D006322 ORTHO05D007716 5.1e-09 64.3 81 44.4
Oeu019970.1 Olea europaea HOM05D006322 ORTHO05D007716 5.1e-09 64.3 56 51.8
Zm00001eb396140 Zea mays HOM05D006322 ORTHO05D007716 5.1e-09 64.3 47 57.4
vmacro08057 Vaccinium macrocarpon HOM05D006322 ORTHO05D007716 6.7e-09 63.9 54 53.7
SGA_v2.0_scaffold119G32659 Striga asiatica HOM05D006322 ORTHO05D007716 1.1e-08 63.2 56 46.4
CSS0012053 Camellia sinensis var. sinensis HOM05D006322 ORTHO05D007716 1.5e-08 62.8 82 43.9
PSO170G6693 Papaver somniferum HOM05D006322 ORTHO05D007716 1.9e-08 62.4 68 50.0
Hund11963 Selenicereus undatus HOM05D006322 ORTHO05D007716 1.9e-08 62.4 79 41.8
PSO357G0527 Papaver somniferum HOM05D006322 ORTHO05D007716 2.5e-08 62.0 68 51.5
FvH4_4g19550 Fragaria vesca HOM05D006322 ORTHO05D007716 5.7e-08 60.8 44 59.1
FAN07G2163 Fragaria x ananassa HOM05D006322 ORTHO05D007716 5.7e-08 60.8 44 59.1
Os03g0306900 Oryza sativa ssp. japonica HOM05D006322 ORTHO05D007716 5.7e-08 60.8 45 57.8
HPP92_001241 Vanilla planifolia HOM05D006322 ORTHO05D007716 1.3e-07 59.7 56 53.6
Ca_21447_v3 Cicer arietinum L. HOM05D006322 ORTHO05D007716 2.8e-07 58.5 74 45.9
FAN12G2263 Fragaria x ananassa HOM05D006322 ORTHO05D007716 2.8e-07 58.5 44 56.8
SEGI_24166 Sequoiadendron giganteum HOM05D006322 ORTHO05D007716 2.8e-07 58.5 69 43.5
MELO3C021273.2 Cucumis melo HOM05D006322 ORTHO05D007716 6.3e-07 57.4 65 47.7
CANSAT54G0480 Cannabis sativa HOM05D006322 ORTHO05D007716 8.2e-07 57.0 54 53.7
ClCG06G004620 Citrullus lanatus HOM05D006322 ORTHO05D007716 8.2e-07 57.0 65 46.2
Sed0017771 Sechium edule HOM05D006322 ORTHO05D007716 4.1e-06 54.7 65 46.2


User provided reference genes

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