Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18919 Brassica carinata HOM05D007600 ORTHO05D009132 7.1e-74 280.4 133 100.0
BraA03t13149Z Brassica rapa HOM05D007600 ORTHO05D009132 9.3e-66 253.4 131 90.8
BcaC01g03796 Brassica carinata HOM05D007600 ORTHO05D009132 1.2e-65 253.1 128 92.2
BolC3t17132H Brassica oleracea HOM05D007600 ORTHO05D009132 1.2e-65 253.1 128 92.2
C03p48540 Brassica napus HOM05D007600 ORTHO05D009132 3.0e-64 248.4 128 90.6
A03p40010 Brassica napus HOM05D007600 ORTHO05D009132 3.9e-64 248.1 128 90.6
BcaB06g25788 Brassica carinata HOM05D007600 ORTHO05D009132 2.5e-63 245.4 128 90.6
A03p40020 Brassica napus HOM05D007600 ORTHO05D009132 6.5e-59 230.7 133 82.7
BolC3t17133H Brassica oleracea HOM05D007600 ORTHO05D009132 6.5e-59 230.7 133 82.7
BcaB06g25789 Brassica carinata HOM05D007600 ORTHO05D009132 1.4e-58 229.6 133 82.0
BcaC01g03795 Brassica carinata HOM05D007600 ORTHO05D009132 1.4e-58 229.6 133 82.0
BraA03t13150Z Brassica rapa HOM05D007600 ORTHO05D009132 2.5e-58 228.8 133 82.0
C03p48550 Brassica napus HOM05D007600 ORTHO05D009132 7.2e-58 227.3 131 82.4
BcaB04g18922 Brassica carinata HOM05D007600 ORTHO05D009132 2.3e-56 222.2 130 81.5
Sp3g15230 Schrenkiella parvula HOM05D007600 ORTHO05D009132 4.3e-55 218.0 131 77.1
BcaB04g18921 Brassica carinata HOM05D007600 ORTHO05D009132 1.1e-53 213.4 120 81.7
BcaB06g25793 Brassica carinata HOM05D007600 ORTHO05D009132 3.4e-52 208.4 131 74.8
A05p32720 Brassica napus HOM05D007600 ORTHO05D009132 1.9e-50 202.6 131 73.3
BolC5t33688H Brassica oleracea HOM05D007600 ORTHO05D009132 3.2e-50 201.8 131 74.8
BraA05t22094Z Brassica rapa HOM05D007600 ORTHO05D009132 7.2e-50 200.7 131 72.5
Thhalv10022138m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 7.2e-50 200.7 125 72.8
C05p49420 Brassica napus HOM05D007600 ORTHO05D009132 2.7e-49 198.7 131 74.0
Thhalv10015617m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 1.1e-47 193.4 124 72.6
Sp1g09320 Schrenkiella parvula HOM05D007600 ORTHO05D009132 1.7e-46 189.5 121 70.2
BraA04t18175Z Brassica rapa HOM05D007600 ORTHO05D009132 2.0e-44 182.6 132 66.7
BcaC07g38580 Brassica carinata HOM05D007600 ORTHO05D009132 1.4e-42 176.4 126 64.3
BcaC02g07741 Brassica carinata HOM05D007600 ORTHO05D009132 1.9e-42 176.0 129 66.7
BolC8t49021H Brassica oleracea HOM05D007600 ORTHO05D009132 2.5e-42 175.6 126 64.3
C08p13860 Brassica napus HOM05D007600 ORTHO05D009132 7.2e-42 174.1 125 64.0
BcaC07g38617 Brassica carinata HOM05D007600 ORTHO05D009132 2.7e-41 172.2 126 61.9
A08p33850 Brassica napus HOM05D007600 ORTHO05D009132 3.6e-41 171.8 123 64.2
BraA08t35300Z Brassica rapa HOM05D007600 ORTHO05D009132 3.6e-41 171.8 123 64.2
CARHR092260 Cardamine hirsuta HOM05D007600 ORTHO05D009132 6.1e-41 171.0 116 63.8
AL3G29990 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 5.7e-39 164.5 118 61.0
AL3G52300 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 2.8e-38 162.2 127 56.7
BolC4t27889H Brassica oleracea HOM05D007600 ORTHO05D009132 4.8e-38 161.4 110 70.0
AT3G17010 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 1.1e-37 160.2 115 60.9
AL6G29290 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 4.1e-37 158.3 128 51.6
AT2G35310 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 7.0e-37 157.5 117 59.0
Carub.0003s2950 Capsella rubella HOM05D007600 ORTHO05D009132 7.0e-37 157.5 127 55.9
AL457U10020 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 1.6e-36 156.4 121 57.9
Sp6g26220 Schrenkiella parvula HOM05D007600 ORTHO05D009132 1.6e-36 156.4 121 56.2
AT2G16210 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 3.5e-36 155.2 127 55.9
Carub.0006s0819 Capsella rubella HOM05D007600 ORTHO05D009132 3.5e-36 155.2 127 58.3
Sp6g26290 Schrenkiella parvula HOM05D007600 ORTHO05D009132 2.2e-35 152.5 128 52.3
AT5G09780 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 3.8e-35 151.8 132 56.8
AL6G20180 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 5.0e-35 151.4 127 57.5
AT5G18090 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 1.1e-34 150.2 128 48.4
A04p26690 Brassica napus HOM05D007600 ORTHO05D009132 1.1e-34 150.2 95 70.5
Thhalv10014143m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 1.5e-34 149.8 131 51.1
BcaC05g28837 Brassica carinata HOM05D007600 ORTHO05D009132 5.5e-34 147.9 91 75.8
Thhalv10015705m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 7.2e-34 147.5 128 50.8
C04p64110 Brassica napus HOM05D007600 ORTHO05D009132 1.2e-33 146.7 95 67.4
CARHR194980 Cardamine hirsuta HOM05D007600 ORTHO05D009132 2.1e-33 146.0 125 51.2
BolC2t06864H Brassica oleracea HOM05D007600 ORTHO05D009132 4.7e-33 144.8 128 50.8
BraA02t05424Z Brassica rapa HOM05D007600 ORTHO05D009132 6.1e-33 144.4 128 50.8
Carub.0006s1638 Capsella rubella HOM05D007600 ORTHO05D009132 6.1e-33 144.4 116 52.6
Carub.0006s1619 Capsella rubella HOM05D007600 ORTHO05D009132 8.0e-33 144.1 128 50.0
CARHR291980 Cardamine hirsuta HOM05D007600 ORTHO05D009132 8.0e-33 144.1 119 53.8
Aa31LG8G13300 Aethionema arabicum HOM05D007600 ORTHO05D009132 1.0e-32 143.7 119 55.5
A02p04630 Brassica napus HOM05D007600 ORTHO05D009132 1.0e-32 143.7 128 50.8
CARHR195070 Cardamine hirsuta HOM05D007600 ORTHO05D009132 1.4e-32 143.3 118 54.2
AL6G29100 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 1.8e-32 142.9 128 50.8
BcaC03g13563 Brassica carinata HOM05D007600 ORTHO05D009132 5.2e-32 141.4 128 50.0
C02p09570 Brassica napus HOM05D007600 ORTHO05D009132 5.2e-32 141.4 128 50.0
BcaB08g36708 Brassica carinata HOM05D007600 ORTHO05D009132 8.8e-32 140.6 121 51.2
AT5G18000 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 1.2e-31 140.2 118 51.7
Thhalv10023054m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 9.7e-31 137.1 96 59.4
BcaB05g23317 Brassica carinata HOM05D007600 ORTHO05D009132 2.2e-30 136.0 128 49.2
A10p21410 Brassica napus HOM05D007600 ORTHO05D009132 2.2e-30 136.0 132 46.2
C09p58890 Brassica napus HOM05D007600 ORTHO05D009132 3.7e-30 135.2 132 46.2
Carub.0003s1676 Capsella rubella HOM05D007600 ORTHO05D009132 1.4e-29 133.3 94 59.6
BcaC04g18726 Brassica carinata HOM05D007600 ORTHO05D009132 1.2e-28 130.2 133 45.9
BolC9t58734H Brassica oleracea HOM05D007600 ORTHO05D009132 1.2e-28 130.2 133 45.9
BraA10t44204Z Brassica rapa HOM05D007600 ORTHO05D009132 6.5e-27 124.4 141 42.6
CARHR106010 Cardamine hirsuta HOM05D007600 ORTHO05D009132 8.5e-27 124.0 105 53.3
Thhalv10001785m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 1.9e-26 122.9 121 46.3
THA.LOC104819596 Tarenaya hassleriana HOM05D007600 ORTHO05D009132 1.8e-24 116.3 118 42.4
A04p33230 Brassica napus HOM05D007600 ORTHO05D009132 1.5e-23 113.2 125 42.4
Thhalv10022780m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 1.5e-23 113.2 157 40.8
BraA04t18782Z Brassica rapa HOM05D007600 ORTHO05D009132 7.5e-23 110.9 125 42.4
C04p70920 Brassica napus HOM05D007600 ORTHO05D009132 2.8e-22 109.0 125 41.6
BolC4t28592H Brassica oleracea HOM05D007600 ORTHO05D009132 2.8e-22 109.0 125 41.6
Aa31LG11G11510 Aethionema arabicum HOM05D007600 ORTHO05D009132 1.0e-19 100.5 94 47.9
BcaB06g29362 Brassica carinata HOM05D007600 ORTHO05D009132 1.4e-16 90.1 122 39.3
Sp3g16060 Schrenkiella parvula HOM05D008662 ORTHO05D010843 8.9e-16 87.4 106 38.7
Aqoxy1G00852 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 1.7e-14 83.2 101 43.6
Aa31LG11G4850 Aethionema arabicum HOM05D005914 ORTHO05D007361 4.9e-14 81.6 124 34.7
C03p49300 Brassica napus HOM05D008662 ORTHO05D010843 4.9e-14 81.6 112 35.7
BcaC05g28732 Brassica carinata HOM05D008662 ORTHO05D010843 6.3e-14 81.3 108 36.1
A03p40460 Brassica napus HOM05D008662 ORTHO05D010843 6.3e-14 81.3 112 35.7
A05p31860 Brassica napus HOM05D008662 ORTHO05D010843 6.3e-14 81.3 108 37.0
BraA03t13204Z Brassica rapa HOM05D008662 ORTHO05D010843 6.3e-14 81.3 112 35.7
BraA05t22018Z Brassica rapa HOM05D008662 ORTHO05D010843 6.3e-14 81.3 108 37.0
BcaB04g18973 Brassica carinata HOM05D008662 ORTHO05D010843 8.3e-14 80.9 111 35.1
BcaC01g03721 Brassica carinata HOM05D008662 ORTHO05D010843 8.3e-14 80.9 112 35.7
BolC3t17219H Brassica oleracea HOM05D008662 ORTHO05D010843 1.1e-13 80.5 112 35.7
C05p48350 Brassica napus HOM05D008662 ORTHO05D010843 1.4e-13 80.1 108 36.1
TAR376G0237 Trochodendron aralioides HOM05D000823 ORTHO05D000088 3.2e-13 79.0 101 42.6
BcaB06g25856 Brassica carinata HOM05D008662 ORTHO05D010843 5.4e-13 78.2 106 35.8
Thhalv10021356m.g Eutrema salsugineum HOM05D008662 ORTHO05D010843 9.2e-13 77.4 108 35.2
AT5G46915 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 2.7e-12 75.9 102 40.2
Sp2g22060 Schrenkiella parvula HOM05D008662 ORTHO05D010843 3.5e-12 75.5 85 37.6
BolC5t33569H Brassica oleracea HOM05D008662 ORTHO05D010843 4.5e-12 75.1 86 36.0
Actinidia27929 Actinidia chinensis HOM05D000823 ORTHO05D009132 5.9e-12 74.7 105 38.1
BraA01t03711Z Brassica rapa HOM05D008662 ORTHO05D010843 7.8e-12 74.3 109 33.9
AT5G25470 Arabidopsis thaliana HOM05D008662 ORTHO05D010843 2.3e-11 72.8 90 35.6
A06p36170 Brassica napus HOM05D008662 ORTHO05D010843 3.9e-11 72.0 86 34.9
A01p36470 Brassica napus HOM05D008662 ORTHO05D010843 5.0e-11 71.6 109 32.1
A02p39720 Brassica napus HOM05D008662 ORTHO05D010843 8.6e-11 70.9 84 36.9
C01p46230 Brassica napus HOM05D008662 ORTHO05D010843 8.6e-11 70.9 109 32.1
C02p59500 Brassica napus HOM05D008662 ORTHO05D010843 8.6e-11 70.9 114 34.2
BolC1t04584H Brassica oleracea HOM05D008662 ORTHO05D010843 8.6e-11 70.9 109 32.1
BolC2t12013H Brassica oleracea HOM05D008662 ORTHO05D010843 8.6e-11 70.9 114 34.2
BraA02t08937Z Brassica rapa HOM05D008662 ORTHO05D010843 8.6e-11 70.9 84 36.9
BcaC09g48756 Brassica carinata HOM05D008662 ORTHO05D010843 1.5e-10 70.1 108 32.4
Actinidia12970 Actinidia chinensis HOM05D000823 ORTHO05D000088 2.5e-10 69.3 99 40.4
AL6G37260 Arabidopsis lyrata HOM05D008662 ORTHO05D010843 2.5e-10 69.3 112 29.5
Thhalv10004752m.g Eutrema salsugineum HOM05D008662 ORTHO05D010843 2.5e-10 69.3 95 34.7
AT5G25475 Arabidopsis thaliana HOM05D008662 ORTHO05D010843 4.3e-10 68.6 90 34.4
Carub.0006s2333 Capsella rubella HOM05D008662 ORTHO05D010843 4.3e-10 68.6 90 35.6
Ciclev10029372m.g Citrus clementina HOM05D000823 ORTHO05D009132 5.6e-10 68.2 86 40.7
BcaB04g20805 Brassica carinata HOM05D008662 ORTHO05D010843 7.3e-10 67.8 86 33.7
BraA06t26539Z Brassica rapa HOM05D008662 ORTHO05D010843 1.2e-09 67.0 81 33.3
QL11p039132 Quercus lobata HOM05D000823 ORTHO05D000088 1.2e-09 67.0 102 39.2
RcHm_v2.0_Chr6g0259811 Rosa chinensis HOM05D000823 ORTHO05D009132 1.2e-09 67.0 107 35.5
AL6G37270 Arabidopsis lyrata HOM05D008662 ORTHO05D010843 1.6e-09 66.6 90 33.3
TWI79G1075 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 1.6e-09 66.6 84 39.3
C07p42350 Brassica napus HOM05D008662 ORTHO05D010843 2.1e-09 66.2 97 33.0
BolC7t44763H Brassica oleracea HOM05D005914 ORTHO05D007361 2.1e-09 66.2 97 33.0
BraA09t36259Z Brassica rapa HOM05D008662 ORTHO05D010843 2.8e-09 65.9 91 37.4
Carub.0006s2332 Capsella rubella HOM05D008662 ORTHO05D010843 3.6e-09 65.5 90 35.6
VMungo0647G0793 Vigna mungo HOM05D001541 ORTHO05D000088 4.7e-09 65.1 99 30.3
Migut.B01167 Erythranthe guttata HOM05D000823 ORTHO05D000088 6.1e-09 64.7 106 33.0
VMungo1127G1459 Vigna mungo HOM05D000823 ORTHO05D000088 6.1e-09 64.7 90 35.6
Phvul.011G050800 Phaseolus vulgaris HOM05D000823 ORTHO05D000088 1.0e-08 63.9 90 34.4
FAN07G2326 Fragaria x ananassa HOM05D000823 ORTHO05D009132 1.4e-08 63.5 113 36.3
Sp4g26250 Schrenkiella parvula HOM05D007600 ORTHO05D009132 1.4e-08 63.5 52 48.1
FAN12G2331 Fragaria x ananassa HOM05D000823 ORTHO05D000088 2.3e-08 62.8 113 36.3
Migut.M00219 Erythranthe guttata HOM05D000823 ORTHO05D000088 3.1e-08 62.4 106 32.1
FvH4_4g19990 Fragaria vesca HOM05D000823 ORTHO05D009132 3.1e-08 62.4 113 36.3
Glyma.11G124300 Glycine max HOM05D000823 ORTHO05D000088 3.1e-08 62.4 112 33.9
Hma1.2p1_1527F.1_g289040 Hydrangea macrophylla HOM05D000823 ORTHO05D000088 3.1e-08 62.4 86 37.2
COL.COLO4_11739 Corchorus olitorius HOM05D000222 ORTHO05D000329 4.0e-08 62.0 101 33.7
Duzib248G0282 Durio zibethinus HOM05D000823 ORTHO05D009132 5.2e-08 61.6 99 35.4
Glyma.11G124200 Glycine max HOM05D000823 ORTHO05D000088 6.8e-08 61.2 82 36.6
Medtr4g068310 Medicago truncatula HOM05D007600 ORTHO05D009132 6.8e-08 61.2 107 32.7
GSVIVG01031850001 Vitis vinifera HOM05D000823 ORTHO05D009132 1.2e-07 60.5 95 32.6
Cfa004943 Carpinus fangiana HOM05D001372 ORTHO05D002010 2.6e-07 59.3 103 35.0
Lj5A204G92 Lonicera japonica HOM05D000823 ORTHO05D000088 2.6e-07 59.3 100 33.0
Aqoxy1G00851 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 4.4e-07 58.5 98 33.7
SalBow1G2043 Salvia bowleyana HOM05D010976 ORTHO05D000088 4.4e-07 58.5 110 33.6
MD05G1072700 Malus domestica HOM05D000823 ORTHO05D000088 5.8e-07 58.2 104 28.8
Thecc.02G093100 Theobroma cacao HOM05D000823 ORTHO05D000088 5.8e-07 58.2 106 34.9
Cc00_g07580 Coffea canephora HOM05D000823 ORTHO05D000088 7.5e-07 57.8 101 32.7
COL.COLO4_22199 Corchorus olitorius HOM05D000395 ORTHO05D000088 7.5e-07 57.8 111 31.5
MD00G1162200 Malus domestica HOM05D000888 ORTHO05D000740 7.5e-07 57.8 87 33.3
RcHm_v2.0_Chr6g0259781 Rosa chinensis HOM05D000823 ORTHO05D000088 7.5e-07 57.8 104 33.7
FAN19G0591 Fragaria x ananassa HOM05D000823 ORTHO05D009132 9.8e-07 57.4 98 35.7
RcHm_v2.0_Chr4g0425711 Rosa chinensis HOM05D000823 ORTHO05D000088 9.8e-07 57.4 109 33.9
RcHm_v2.0_Chr6g0259791 Rosa chinensis HOM05D000823 ORTHO05D000088 9.8e-07 57.4 106 33.0
FAN15G0739 Fragaria x ananassa HOM05D000823 ORTHO05D000088 1.3e-06 57.0 106 33.0
FAN24G0699 Fragaria x ananassa HOM05D000823 ORTHO05D000088 1.3e-06 57.0 95 35.8
Aa31LG7G14390 Aethionema arabicum HOM05D006628 ORTHO05D000088 1.7e-06 56.6 97 37.1
Sed0013876 Sechium edule HOM05D000395 ORTHO05D000088 2.9e-06 55.8 105 31.4
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 2.9e-06 55.8 118 32.2
FvH4_2g07230 Fragaria vesca HOM05D000823 ORTHO05D000088 3.7e-06 55.5 60 41.7
FAN23G1978 Fragaria x ananassa HOM05D000823 ORTHO05D009132 3.7e-06 55.5 126 31.7
SalBow1G6354 Salvia bowleyana HOM05D010976 ORTHO05D000088 4.9e-06 55.1 119 31.9
Aqoxy214s002 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 6.4e-06 54.7 64 37.5
TWI56G0742 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 8.3e-06 54.3 101 31.7


User provided reference genes

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