Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18917 Brassica carinata HOM05D001503 ORTHO05D003820 2.0e-43 178.7 92 100.0
BcaB04g18914 Brassica carinata HOM05D001503 ORTHO05D003820 1.4e-39 166.0 85 98.8
BcaB04g18915 Brassica carinata HOM05D001503 ORTHO05D003820 1.4e-39 166.0 85 98.8
BcaC01g03798 Brassica carinata HOM05D001503 ORTHO05D003820 1.4e-39 166.0 85 98.8
C03p48520 Brassica napus HOM05D001503 ORTHO05D003820 1.4e-39 166.0 85 98.8
BolC3t17130H Brassica oleracea HOM05D001503 ORTHO05D003820 1.4e-39 166.0 85 98.8
A03p39990 Brassica napus HOM05D001503 ORTHO05D003820 1.5e-33 146.0 86 87.2
BraA03t13147Z Brassica rapa HOM05D001503 ORTHO05D003820 1.5e-33 146.0 86 87.2
CARHR092220 Cardamine hirsuta HOM05D001503 ORTHO05D003820 2.9e-26 121.7 90 70.0
BcaB06g25787 Brassica carinata HOM05D001503 ORTHO05D003820 2.5e-25 118.6 82 74.4
Sp3g15190 Schrenkiella parvula HOM05D001503 ORTHO05D003820 4.2e-25 117.9 89 69.7
Thhalv10020389m.g Eutrema salsugineum HOM05D001503 ORTHO05D003820 5.5e-25 117.5 88 70.5
AL3G29930 Arabidopsis lyrata HOM05D001503 ORTHO05D003820 4.4e-22 107.8 88 68.2
AT3G16950 Arabidopsis thaliana HOM05D001503 ORTHO05D003820 2.2e-21 105.5 88 65.9
Carub.0003s1670 Capsella rubella HOM05D001503 ORTHO05D003820 5.4e-20 100.9 70 74.3
THA.LOC104821792 Tarenaya hassleriana HOM05D001503 ORTHO05D003820 2.5e-17 92.0 85 58.8
AT4G16155 Arabidopsis thaliana HOM05D001503 ORTHO05D003820 7.2e-17 90.5 88 59.1
Aa31LG8G4010 Aethionema arabicum HOM05D001503 ORTHO05D003820 6.1e-16 87.4 88 58.0
Aa31LG10G5970 Aethionema arabicum HOM05D001503 ORTHO05D003820 1.0e-15 86.7 88 58.0
Thhalv10024608m.g Eutrema salsugineum HOM05D001503 ORTHO05D003820 5.2e-15 84.3 89 58.4
Carub.0007s2540 Capsella rubella HOM05D001503 ORTHO05D003820 2.6e-14 82.0 86 59.3
AL7G38960 Arabidopsis lyrata HOM05D001503 ORTHO05D003820 4.4e-14 81.3 89 58.4
BcaNung00219 Brassica carinata HOM05D001503 ORTHO05D003820 4.4e-14 81.3 86 59.3
BolC1t02616H Brassica oleracea HOM05D001503 ORTHO05D003820 9.8e-14 80.1 86 58.1
Sp7g14660 Schrenkiella parvula HOM05D001503 ORTHO05D003820 1.8e-12 75.9 90 53.3
BraA01t02046Z Brassica rapa HOM05D001503 ORTHO05D003820 3.1e-12 75.1 86 54.7
THA.LOC104820298 Tarenaya hassleriana HOM05D001503 ORTHO05D003820 3.1e-12 75.1 88 54.5
A01p21410 Brassica napus HOM05D001503 ORTHO05D003820 7.0e-12 73.9 86 54.7
CARHR222520 Cardamine hirsuta HOM05D001503 ORTHO05D003820 5.9e-11 70.9 85 54.1
Cpa.g.sc929.4 Carica papaya HOM05D001503 ORTHO05D003820 1.5e-09 66.2 89 47.2
Prupe.1G122400 Prunus persica HOM05D001503 ORTHO05D003820 4.3e-09 64.7 91 45.1
BcaC09g50312 Brassica carinata HOM05D001503 ORTHO05D003820 7.3e-09 63.9 86 53.5
C01p26750 Brassica napus HOM05D001503 ORTHO05D003820 7.3e-09 63.9 86 53.5
RcHm_v2.0_Chr4g0424491 Rosa chinensis HOM05D001503 ORTHO05D003820 1.2e-08 63.2 88 43.2
TWI09G0712 Tripterygium wilfordii HOM05D001503 ORTHO05D003820 2.8e-08 62.0 93 45.2
VMungo1215G3107 Vigna mungo HOM05D001503 ORTHO05D003820 3.6e-08 61.6 89 46.1
FAN12G3021 Fragaria x ananassa HOM05D001503 ORTHO05D003820 1.0e-07 60.1 92 45.7
BcaC06g33461 Brassica carinata HOM05D001503 ORTHO05D003820 1.8e-07 59.3 78 52.6
FvH4_4g19440 Fragaria vesca HOM05D001503 ORTHO05D003820 3.0e-07 58.5 92 44.6
FAN12G4136 Fragaria x ananassa HOM05D001503 ORTHO05D003820 3.0e-07 58.5 92 44.6
FAN07G0951 Fragaria x ananassa HOM05D001503 ORTHO05D003820 4.0e-07 58.2 88 42.0
Thecc.04G297100 Theobroma cacao HOM05D001503 ORTHO05D003820 4.0e-07 58.2 89 46.1
arahy.Tifrunner.gnm1.ann1.GR1JV3 Arachis hypogaea HOM05D001503 ORTHO05D003820 5.2e-07 57.8 92 43.5
Glyma.07G241600 Glycine max HOM05D001503 ORTHO05D003820 5.2e-07 57.8 92 41.3
Phvul.003G112300 Phaseolus vulgaris HOM05D001503 ORTHO05D003820 5.2e-07 57.8 89 42.7
Gohir.D09G236200 Gossypium hirsutum HOM05D001503 ORTHO05D003820 8.9e-07 57.0 79 43.0
Gorai.006G259300 Gossypium raimondii HOM05D001503 ORTHO05D003820 8.9e-07 57.0 79 43.0
COL.COLO4_34652 Corchorus olitorius HOM05D001503 ORTHO05D003820 2.0e-06 55.8 83 43.4
Dinv24427 Davidia involucrata HOM05D001503 ORTHO05D003820 2.0e-06 55.8 89 44.9
Glyma.17G032300 Glycine max HOM05D001503 ORTHO05D003820 2.0e-06 55.8 92 40.2
Atru.chr4.2982 Acer truncatum HOM05D001503 ORTHO05D003820 2.6e-06 55.5 106 40.6
Dinv30876 Davidia involucrata HOM05D001503 ORTHO05D045123 2.6e-06 55.5 90 42.2
Duzib151G0666 Durio zibethinus HOM05D001503 ORTHO05D003820 2.6e-06 55.5 85 49.4
Lsat_1_v5_gn_7_74640 Lactuca sativa HOM05D001503 ORTHO05D003820 3.4e-06 55.1 89 44.9
Hund03110 Selenicereus undatus HOM05D001503 ORTHO05D003820 3.4e-06 55.1 90 41.1
Glyma.15G143100 Glycine max HOM05D001503 ORTHO05D003820 4.4e-06 54.7 91 40.7
arahy.Tifrunner.gnm1.ann1.SJPB47 Arachis hypogaea HOM05D001503 ORTHO05D003820 7.5e-06 53.9 92 41.3
Oeu053703.2 Olea europaea HOM05D001503 ORTHO05D003820 7.5e-06 53.9 90 44.4
vmacro19726 Vaccinium macrocarpon HOM05D001503 ORTHO05D003820 9.8e-06 53.5 87 41.4


User provided reference genes

Program Settings