Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18882 Brassica carinata HOM05D000007 ORTHO05D000017 1.1e-184 649.8 315 100.0
BcaC01g03833 Brassica carinata HOM05D000007 ORTHO05D000017 4.3e-109 398.7 345 61.4
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 4.3e-109 398.7 345 61.4
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 2.3e-107 392.9 339 61.4
C03p48110 Brassica napus HOM05D000007 ORTHO05D000017 1.7e-97 360.1 322 61.5
BcaC01g03836 Brassica carinata HOM05D001897 ORTHO05D001953 4.9e-97 358.6 322 61.2
BcaC04g21347 Brassica carinata HOM05D000007 ORTHO05D000017 6.2e-92 341.7 347 56.5
C09p32930 Brassica napus HOM05D000007 ORTHO05D000017 2.3e-91 339.7 340 56.5
BolC3t17091H Brassica oleracea HOM05D000007 ORTHO05D000017 2.6e-90 336.3 309 60.2
BolC9t56128H Brassica oleracea HOM05D000007 ORTHO05D000017 2.6e-90 336.3 347 56.2
Carub.0008s0557 Capsella rubella HOM05D000007 ORTHO05D000017 2.9e-57 226.5 323 44.0
A03p39700 Brassica napus HOM05D000007 ORTHO05D000017 4.2e-56 222.6 212 53.8
BraA03t13120Z Brassica rapa HOM05D001353 ORTHO05D000017 1.8e-46 190.7 161 67.7
AL4G39550 Arabidopsis lyrata HOM05D000007 ORTHO05D000017 7.4e-37 158.7 340 35.0
Thhalv10015820m.g Eutrema salsugineum HOM05D000007 ORTHO05D000017 3.2e-32 143.3 172 45.9
Thhalv10022356m.g Eutrema salsugineum HOM05D000007 ORTHO05D000017 9.4e-24 115.2 121 47.9
Thhalv10028334m.g Eutrema salsugineum HOM05D000007 ORTHO05D000017 3.9e-22 109.8 349 30.1
THA.LOC104821432 Tarenaya hassleriana HOM05D000007 ORTHO05D000017 3.7e-20 103.2 351 28.8
THA.LOC104818178 Tarenaya hassleriana HOM05D000007 ORTHO05D000017 3.0e-14 83.6 316 26.9
A03p39720 Brassica napus HOM05D000007 ORTHO05D011249 1.0e-09 68.6 344 25.0
RcHm_v2.0_Chr6g0294901 Rosa chinensis HOM05D000007 ORTHO05D000017 1.7e-09 67.8 191 26.2
vmacro03637 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 1.7e-09 67.8 213 24.9
Aqoxy4G00452 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 2.9e-09 67.0 279 25.8
BraA03t13122Z Brassica rapa HOM05D000007 ORTHO05D011249 2.9e-09 67.0 336 24.7
DCAR_019955 Daucus carota HOM05D000007 ORTHO05D000017 2.9e-09 67.0 284 26.1
Actinidia26854 Actinidia chinensis HOM05D000007 ORTHO05D000017 5.0e-09 66.2 263 24.3
Gohir.A08G015350 Gossypium hirsutum HOM05D000007 ORTHO05D000017 5.0e-09 66.2 260 26.5
Gohir.D08G025855 Gossypium hirsutum HOM05D000007 ORTHO05D000017 6.5e-09 65.9 330 23.6
BcaB04g18889 Brassica carinata HOM05D000007 ORTHO05D011249 1.1e-08 65.1 245 26.1
Dinv01035 Davidia involucrata HOM05D000007 ORTHO05D000039 1.1e-08 65.1 140 27.1
Dinv07686 Davidia involucrata HOM05D000007 ORTHO05D000039 1.1e-08 65.1 140 27.1
A05p33290 Brassica napus HOM05D000007 ORTHO05D011249 1.5e-08 64.7 203 26.1
Cfa003137 Carpinus fangiana HOM05D000007 ORTHO05D000017 1.9e-08 64.3 197 25.4
Eucgr.H02654 Eucalyptus grandis HOM05D000007 ORTHO05D000017 1.9e-08 64.3 321 24.0
Prupe.3G191300 Prunus persica HOM05D000007 ORTHO05D000017 1.9e-08 64.3 290 22.8
RcHm_v2.0_Chr5g0030551 Rosa chinensis HOM05D000007 ORTHO05D000017 1.9e-08 64.3 338 24.0
C05p50290 Brassica napus HOM05D000007 ORTHO05D011249 2.5e-08 63.9 257 24.9
BolC5t33779H Brassica oleracea HOM05D000007 ORTHO05D011249 2.5e-08 63.9 257 26.1
QL04p019507 Quercus lobata HOM05D000007 ORTHO05D000039 2.5e-08 63.9 312 25.3
Haze_25865 Corylus avellana HOM05D000007 ORTHO05D000017 3.2e-08 63.5 197 24.9
RcHm_v2.0_Chr3g0457391 Rosa chinensis HOM05D000007 ORTHO05D000039 3.2e-08 63.5 166 29.5
Lj6C667T6 Lonicera japonica HOM05D000007 ORTHO05D000017 5.5e-08 62.8 299 25.8
RcHm_v2.0_Chr3g0455781 Rosa chinensis HOM05D000007 ORTHO05D000039 5.5e-08 62.8 170 29.4
Lju41C15G6 Lonicera japonica HOM05D000007 ORTHO05D000039 7.2e-08 62.4 164 27.4
CAN.G132.14 Capsicum annuum HOM05D000007 ORTHO05D000017 9.4e-08 62.0 222 24.3
Dinv24459 Davidia involucrata HOM05D000007 ORTHO05D000039 9.4e-08 62.0 277 24.9
ECA233G3336 Erigeron canadensis HOM05D000007 ORTHO05D000039 9.4e-08 62.0 127 29.1
ECA248G1420 Erigeron canadensis HOM05D000007 ORTHO05D000039 9.4e-08 62.0 277 27.1
FAN05G1384 Fragaria x ananassa HOM05D000007 ORTHO05D000017 9.4e-08 62.0 316 22.5
RcHm_v2.0_Chr2g0154671 Rosa chinensis HOM05D000007 ORTHO05D000017 1.2e-07 61.6 349 24.6
FvH4_6g06750 Fragaria vesca HOM05D000007 ORTHO05D000039 1.6e-07 61.2 197 27.9
Gohir.D09G059300 Gossypium hirsutum HOM05D000007 ORTHO05D000017 1.6e-07 61.2 261 26.8
Medtr3g030350 Medicago truncatula HOM05D000007 ORTHO05D000017 1.6e-07 61.2 199 25.6
QL08p040393 Quercus lobata HOM05D000007 ORTHO05D000039 1.6e-07 61.2 293 24.2
Aa31LG8G3350 Aethionema arabicum HOM05D000007 ORTHO05D011249 2.1e-07 60.8 337 21.7
SalBow1G7644 Salvia bowleyana HOM05D000007 ORTHO05D000017 2.1e-07 60.8 138 29.7
AUR62004916 Chenopodium quinoa HOM05D029478 ORTHO05D015825 2.7e-07 60.5 199 25.6
Dinv15480 Davidia involucrata HOM05D000007 ORTHO05D000039 2.7e-07 60.5 223 23.3
Actinidia29351 Actinidia chinensis HOM05D000007 ORTHO05D000039 3.6e-07 60.1 237 24.1
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 3.6e-07 60.1 142 35.9
ECA233G5135 Erigeron canadensis HOM05D000007 ORTHO05D000002 3.6e-07 60.1 139 27.3
Thecc.04G284400 Theobroma cacao HOM05D000007 ORTHO05D000017 3.6e-07 60.1 200 25.5
CSS0002420 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 4.7e-07 59.7 283 22.6
ECA232G1164 Erigeron canadensis HOM05D000007 ORTHO05D000039 4.7e-07 59.7 305 25.6
FAN20G0857 Fragaria x ananassa HOM05D000007 ORTHO05D000039 4.7e-07 59.7 108 30.6
MD17G1124300 Malus domestica HOM05D000007 ORTHO05D000017 4.7e-07 59.7 264 23.5
TPR.G3820 Trifolium pratense HOM05D000007 ORTHO05D000017 4.7e-07 59.7 189 27.0
Ah.11g039280 Amaranthus hybridus HOM05D024306 ORTHO05D012960 6.1e-07 59.3 182 25.3
CSS0024527 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 6.1e-07 59.3 206 23.8
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 6.1e-07 59.3 205 28.3
FAN24G1599 Fragaria x ananassa HOM05D000007 ORTHO05D000039 8.0e-07 58.9 189 25.4
CARHR091400 Cardamine hirsuta HOM05D000007 ORTHO05D000017 1.0e-06 58.5 180 26.7
DCAR_027926 Daucus carota HOM05D000007 ORTHO05D000039 1.0e-06 58.5 282 27.0
Eucgr.H02929 Eucalyptus grandis HOM05D000007 ORTHO05D000017 1.0e-06 58.5 278 23.7
Gorai.006G073900 Gossypium raimondii HOM05D000007 ORTHO05D000017 1.0e-06 58.5 261 26.4
Medtr3g013770 Medicago truncatula HOM05D000007 ORTHO05D000017 1.0e-06 58.5 194 23.2
CSS0016805 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000676 1.4e-06 58.2 249 24.1
Cfa007607 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.4e-06 58.2 169 25.4
Eucgr.H02653 Eucalyptus grandis HOM05D000007 ORTHO05D000017 1.4e-06 58.2 81 38.3
Manes.15G025900 Manihot esculenta HOM05D000007 ORTHO05D000017 1.4e-06 58.2 127 29.1
Potri.017G058000 Populus trichocarpa HOM05D000007 ORTHO05D000017 1.4e-06 58.2 159 28.3
BraA05t22154Z Brassica rapa HOM05D000007 ORTHO05D000017 1.8e-06 57.8 114 31.6
CSS0003262 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 1.8e-06 57.8 175 24.6
CANSAT56G0084 Cannabis sativa HOM05D000007 ORTHO05D000017 1.8e-06 57.8 217 23.0
DCAR_020301 Daucus carota HOM05D000007 ORTHO05D000017 1.8e-06 57.8 132 28.8
ECA246G0003 Erigeron canadensis HOM05D000524 ORTHO05D000381 1.8e-06 57.8 67 38.8
Eucgr.H02734 Eucalyptus grandis HOM05D000007 ORTHO05D000017 1.8e-06 57.8 281 24.9
Nitab4.5_0000941g0220 Nicotiana tabacum HOM05D000007 ORTHO05D000017 1.8e-06 57.8 201 26.9
Hund29427 Selenicereus undatus HOM05D000007 ORTHO05D000017 1.8e-06 57.8 197 26.4
Hund29429 Selenicereus undatus HOM05D000007 ORTHO05D000017 1.8e-06 57.8 197 26.4
Cfa007606 Carpinus fangiana HOM05D000007 ORTHO05D000039 2.3e-06 57.4 170 25.3
Ca_16861_v3 Cicer arietinum L. HOM05D000007 ORTHO05D000017 2.3e-06 57.4 61 42.6
FvH4_6g40030 Fragaria vesca HOM05D000007 ORTHO05D000017 2.3e-06 57.4 296 24.0
FAN14G0847 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.3e-06 57.4 150 27.3
Prupe.6G319800 Prunus persica HOM05D000007 ORTHO05D000039 2.3e-06 57.4 126 28.6
ECA233G3278 Erigeron canadensis HOM05D006138 ORTHO05D007778 3.0e-06 57.0 266 25.6
ECA233G4681 Erigeron canadensis HOM05D000007 ORTHO05D000017 3.0e-06 57.0 63 44.4
FvH4_6g33740 Fragaria vesca HOM05D000007 ORTHO05D000017 3.0e-06 57.0 213 26.8
FAN14G2437 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.0e-06 57.0 213 26.8
Gohir.A09G060100 Gossypium hirsutum HOM05D000007 ORTHO05D000017 3.0e-06 57.0 261 26.1
Prupe.6G319300 Prunus persica HOM05D000007 ORTHO05D000039 3.0e-06 57.0 170 23.5
Prupe.7G269000 Prunus persica HOM05D000007 ORTHO05D000017 3.0e-06 57.0 293 24.9
Rhsim09G0052700 Rhododendron simsii HOM05D000007 ORTHO05D000017 3.0e-06 57.0 64 37.5
Eucgr.H02735 Eucalyptus grandis HOM05D000007 ORTHO05D000017 4.0e-06 56.6 124 28.2
FvH4_2g25660 Fragaria vesca HOM05D000007 ORTHO05D000039 4.0e-06 56.6 82 34.1
FAN24G0319 Fragaria x ananassa HOM05D000007 ORTHO05D000039 4.0e-06 56.6 82 34.1
PSO675G3594 Papaver somniferum HOM05D000007 ORTHO05D000017 4.0e-06 56.6 164 27.4
PSO782G5241 Papaver somniferum HOM05D000007 ORTHO05D000017 4.0e-06 56.6 125 31.2
CiPaw.03G182200 Carya illinoinensis HOM05D000007 ORTHO05D000039 5.2e-06 56.2 275 24.7
CiPaw.07G037500 Carya illinoinensis HOM05D000007 ORTHO05D000017 5.2e-06 56.2 131 30.5
Ciclev10028697m.g Citrus clementina HOM05D000007 ORTHO05D000017 5.2e-06 56.2 266 24.1
Dinv38360 Davidia involucrata HOM05D000007 ORTHO05D000017 5.2e-06 56.2 329 23.7
FvH4_6g39180 Fragaria vesca HOM05D000007 ORTHO05D000017 5.2e-06 56.2 150 27.3
Gohir.D08G025877 Gossypium hirsutum HOM05D000007 ORTHO05D000017 5.2e-06 56.2 210 27.1
Gorai.004G022000 Gossypium raimondii HOM05D000007 ORTHO05D000017 5.2e-06 56.2 210 27.1
Lju41C15T0 Lonicera japonica HOM05D000007 ORTHO05D000039 5.2e-06 56.2 144 25.0
QL07p003148 Quercus lobata HOM05D000007 ORTHO05D000039 5.2e-06 56.2 274 22.3
SalBow1G8633 Salvia bowleyana HOM05D000007 ORTHO05D000017 5.2e-06 56.2 141 29.1
Actinidia35958 Actinidia chinensis HOM05D000007 ORTHO05D000017 6.8e-06 55.8 61 37.7
EL10Ac8g20568 Beta vulgaris HOM05D000007 ORTHO05D000017 6.8e-06 55.8 173 27.7
BcaB06g26553 Brassica carinata HOM05D000007 ORTHO05D000017 6.8e-06 55.8 281 24.9
Gohir.A08G015180 Gossypium hirsutum HOM05D000007 ORTHO05D000017 6.8e-06 55.8 343 21.9
Gorai.004G021600 Gossypium raimondii HOM05D000007 ORTHO05D000017 6.8e-06 55.8 296 22.3
PSO339G0477 Papaver somniferum HOM05D000007 ORTHO05D000017 6.8e-06 55.8 75 38.7
PSO675G3468 Papaver somniferum HOM05D000007 ORTHO05D000017 6.8e-06 55.8 221 25.8
RcHm_v2.0_Chr2g0153011 Rosa chinensis HOM05D000007 ORTHO05D000017 6.8e-06 55.8 348 23.6
SalBow7G3538 Salvia bowleyana HOM05D000007 ORTHO05D000039 6.8e-06 55.8 201 26.9
FAN02G3460 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.8e-06 55.5 151 26.5
FAN09G3678 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.8e-06 55.5 213 26.8
HanXRQChr15g0466421 Helianthus annuus HOM05D000007 ORTHO05D000039 8.8e-06 55.5 128 28.1
Lj3A538T48 Lonicera japonica HOM05D000007 ORTHO05D000017 8.8e-06 55.5 177 23.7
PSO339G3927 Papaver somniferum HOM05D000007 ORTHO05D000017 8.8e-06 55.5 295 21.0
Peaxi162Scf00047g00814 Petunia axillaris HOM05D000007 ORTHO05D000017 8.8e-06 55.5 281 23.5
RcHm_v2.0_Chr1g0328801 Rosa chinensis HOM05D000007 ORTHO05D000017 8.8e-06 55.5 132 27.3
RcHm_v2.0_Chr2g0154601 Rosa chinensis HOM05D000007 ORTHO05D000017 8.8e-06 55.5 359 24.8
RcHm_v2.0_Chr3g0456311 Rosa chinensis HOM05D000007 ORTHO05D000039 8.8e-06 55.5 132 31.1
SalBow7G0086 Salvia bowleyana HOM05D000007 ORTHO05D000017 8.8e-06 55.5 141 29.1
Sc05g0008290 Simmondsia chinensis HOM05D000007 ORTHO05D000017 8.8e-06 55.5 264 24.6


User provided reference genes

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