Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18853 Brassica carinata HOM05D004217 ORTHO05D094331 2.3e-102 375.6 191 100.0
BcaB06g29631 Brassica carinata HOM05D002050 ORTHO05D001949 4.4e-32 142.1 85 88.2
BcaB06g29630 Brassica carinata HOM05D004217 ORTHO05D095231 7.7e-21 104.8 58 93.1
BcaB03g15952 Brassica carinata HOM05D000552 ORTHO05D000469 1.6e-13 80.5 90 52.2
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 1.0e-12 77.8 125 43.2
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 2.2e-12 76.6 125 42.4
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 2.9e-12 76.3 125 40.8
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 3.8e-12 75.9 125 41.6
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 3.8e-12 75.9 125 39.2
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 6.5e-12 75.1 125 41.6
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 8.5e-12 74.7 125 41.6
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 1.1e-11 74.3 125 40.0
C04p68950 Brassica napus HOM05D004217 ORTHO05D005561 1.5e-11 73.9 40 87.5
BolC4t28396H Brassica oleracea HOM05D004217 ORTHO05D005561 1.5e-11 73.9 40 87.5
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 1.9e-11 73.6 125 41.6
BcaC02g12897 Brassica carinata HOM05D004217 ORTHO05D005561 1.9e-11 73.6 40 90.0
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 1.9e-11 73.6 125 41.6
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 2.5e-11 73.2 125 40.0
AL7G51080 Arabidopsis lyrata HOM05D004217 ORTHO05D080694 4.2e-11 72.4 40 87.5
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 7.2e-11 71.6 125 40.8
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 7.2e-11 71.6 125 40.8
AL7G43680 Arabidopsis lyrata HOM05D004217 ORTHO05D026831 9.4e-11 71.2 40 85.0
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 8.0e-10 68.2 40 80.0
BcaC08g47612 Brassica carinata HOM05D000552 ORTHO05D000469 1.0e-09 67.8 90 51.1
BraA07t31812Z Brassica rapa HOM05D000552 ORTHO05D000469 1.0e-09 67.8 92 47.8
C02p17430 Brassica napus HOM05D000552 ORTHO05D000469 1.4e-09 67.4 91 48.4
BolC2t07857H Brassica oleracea HOM05D000552 ORTHO05D000469 1.4e-09 67.4 91 48.4
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 1.8e-09 67.0 173 34.7
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 1.8e-09 67.0 46 69.6
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 1.8e-09 67.0 46 67.4
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 1.8e-09 67.0 46 67.4
QL07p008692 Quercus lobata HOM05D004217 ORTHO05D005561 1.8e-09 67.0 80 46.2
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 3.0e-09 66.2 44 72.7
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 3.0e-09 66.2 40 77.5
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 3.0e-09 66.2 40 80.0
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 3.0e-09 66.2 40 80.0
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 3.0e-09 66.2 46 71.7
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 4.0e-09 65.9 40 77.5
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 4.0e-09 65.9 40 77.5
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 4.0e-09 65.9 40 77.5
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 5.2e-09 65.5 40 77.5
Hma1.2p1_0521F.1_g171490 Hydrangea macrophylla HOM05D004217 ORTHO05D005561 5.2e-09 65.5 125 38.4
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 5.2e-09 65.5 40 75.0
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 6.8e-09 65.1 40 75.0
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 6.8e-09 65.1 40 75.0
ClCG04G004230 Citrullus lanatus HOM05D004217 ORTHO05D005561 6.8e-09 65.1 40 80.0
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 6.8e-09 65.1 40 80.0
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 6.8e-09 65.1 40 80.0
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 6.8e-09 65.1 40 80.0
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 6.8e-09 65.1 40 77.5
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 6.8e-09 65.1 40 77.5
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 6.8e-09 65.1 40 77.5
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 6.8e-09 65.1 40 77.5
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 6.8e-09 65.1 44 68.2
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 6.8e-09 65.1 40 77.5
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 6.8e-09 65.1 40 77.5
RcHm_v2.0_Chr2g0125061 Rosa chinensis HOM05D004217 ORTHO05D005561 6.8e-09 65.1 40 77.5
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 6.8e-09 65.1 40 77.5
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 6.8e-09 65.1 40 77.5
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 8.8e-09 64.7 40 77.5
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 8.8e-09 64.7 40 77.5
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 8.8e-09 64.7 40 77.5
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 8.8e-09 64.7 40 77.5
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 8.8e-09 64.7 40 77.5
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 8.8e-09 64.7 40 77.5
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 8.8e-09 64.7 40 77.5
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 8.8e-09 64.7 40 77.5
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 8.8e-09 64.7 40 77.5
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 8.8e-09 64.7 40 77.5
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 8.8e-09 64.7 40 75.0
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 8.8e-09 64.7 46 69.6
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 8.8e-09 64.7 44 68.2
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 8.8e-09 64.7 44 68.2
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 8.8e-09 64.7 44 68.2
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 1.2e-08 64.3 40 75.0
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 1.2e-08 64.3 44 72.7
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 1.2e-08 64.3 39 74.4
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 1.2e-08 64.3 40 75.0
Haze_19719 Corylus avellana HOM05D004217 ORTHO05D005561 1.2e-08 64.3 44 72.7
Lalb_Chr17g0341031 Lupinus albus HOM05D004217 ORTHO05D005561 1.2e-08 64.3 44 70.5
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 1.2e-08 64.3 40 77.5
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 1.2e-08 64.3 40 72.5
Nitab4.5_0000636g0010 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.2e-08 64.3 44 70.5
Nitab4.5_0001874g0050 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.2e-08 64.3 44 70.5
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 1.2e-08 64.3 44 70.5
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 1.2e-08 64.3 44 70.5
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 1.2e-08 64.3 44 70.5
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 1.2e-08 64.3 44 70.5
ECA236G0163 Erigeron canadensis HOM05D004217 ORTHO05D005561 1.5e-08 63.9 40 75.0
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 1.5e-08 63.9 125 36.8
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.5e-08 63.9 125 36.8
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.5e-08 63.9 125 36.8
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 1.5e-08 63.9 40 75.0
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 1.5e-08 63.9 40 75.0
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 1.5e-08 63.9 40 72.5
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 1.5e-08 63.9 40 77.5
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 1.5e-08 63.9 40 75.0
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 2.0e-08 63.5 40 75.0
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 2.0e-08 63.5 40 75.0
Carub.0004s0112 Capsella rubella HOM05D004217 ORTHO05D005561 2.0e-08 63.5 144 35.4
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 2.0e-08 63.5 40 75.0
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 2.0e-08 63.5 39 76.9
Glyma.07G084800 Glycine max HOM05D004217 ORTHO05D005561 2.0e-08 63.5 39 74.4
Glyma.09G192100 Glycine max HOM05D004217 ORTHO05D005561 2.0e-08 63.5 39 74.4
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.0e-08 63.5 40 75.0
Nitab4.5_0000571g0060 Nicotiana tabacum HOM05D004217 ORTHO05D005561 2.0e-08 63.5 125 36.8
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 2.0e-08 63.5 44 68.2
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 2.0e-08 63.5 44 68.2
SHI39628 Sapria himalayana HOM05D004217 ORTHO05D005561 2.0e-08 63.5 40 77.5
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 2.0e-08 63.5 59 55.9
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 2.6e-08 63.2 46 65.2
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 2.6e-08 63.2 40 75.0
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 2.6e-08 63.2 54 61.1
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 2.6e-08 63.2 40 75.0
HPP92_018983 Vanilla planifolia HOM05D004217 ORTHO05D005561 2.6e-08 63.2 40 72.5
BolC6t40173H Brassica oleracea HOM05D000552 ORTHO05D000469 3.4e-08 62.8 86 51.2
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 3.4e-08 62.8 40 72.5
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 3.4e-08 62.8 54 63.0
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 3.4e-08 62.8 143 37.8
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 4.4e-08 62.4 44 65.9
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 4.4e-08 62.4 44 65.9
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 4.4e-08 62.4 40 75.0
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 4.4e-08 62.4 40 75.0
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 4.4e-08 62.4 44 65.9
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 4.4e-08 62.4 98 40.8
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 4.4e-08 62.4 40 75.0
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 4.4e-08 62.4 40 72.5
EL10Ac6g14020 Beta vulgaris HOM05D004217 ORTHO05D005561 5.7e-08 62.0 50 60.0
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 5.7e-08 62.0 40 72.5
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 7.5e-08 61.6 44 68.2
DCAR_020547 Daucus carota HOM05D004217 ORTHO05D005561 7.5e-08 61.6 39 71.8
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 7.5e-08 61.6 40 75.0
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 9.8e-08 61.2 39 71.8
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 9.8e-08 61.2 40 70.0
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 1.3e-07 60.8 44 65.9
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 1.3e-07 60.8 40 70.0
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 1.7e-07 60.5 40 70.0
BcaC05g28858 Brassica carinata HOM05D000552 ORTHO05D000469 1.7e-07 60.5 86 45.3
C06p51530 Brassica napus HOM05D000552 ORTHO05D000469 1.7e-07 60.5 86 50.0
CAN.G541.30 Capsicum annuum HOM05D004217 ORTHO05D005561 1.7e-07 60.5 139 33.1
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 1.7e-07 60.5 46 65.2
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 2.2e-07 60.1 44 63.6
Os08g0240600 Oryza sativa ssp. japonica HOM05D004217 ORTHO05D005561 3.7e-07 59.3 40 67.5
Zm00001eb178240 Zea mays HOM05D004217 ORTHO05D005561 3.7e-07 59.3 40 67.5
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 4.8e-07 58.9 77 40.3
vmacro08529 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 4.8e-07 58.9 46 58.7
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 6.3e-07 58.5 87 37.9
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 1.8e-06 57.0 46 58.7
A07p42910 Brassica napus HOM05D000552 ORTHO05D000469 5.4e-06 55.5 116 37.1
SalBow6G4102 Salvia bowleyana HOM05D004217 ORTHO05D005561 5.4e-06 55.5 40 62.5


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