Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18852 Brassica carinata HOM05D001705 ORTHO05D008928 3.3e-62 241.5 121 100.0
BcaB05g23921 Brassica carinata HOM05D001705 ORTHO05D008928 2.8e-45 185.3 102 91.2
Sp6g07460 Schrenkiella parvula HOM05D001705 ORTHO05D008928 4.7e-40 167.9 95 87.4
Thhalv10029346m.g Eutrema salsugineum HOM05D001705 ORTHO05D008928 2.0e-38 162.5 92 88.0
Aa31LG9G11900 Aethionema arabicum HOM05D001705 ORTHO05D008928 1.3e-37 159.8 102 77.5
BcaB01g01450 Brassica carinata HOM05D001705 ORTHO05D008928 6.3e-37 157.5 98 79.6
BcaC04g21016 Brassica carinata HOM05D001705 ORTHO05D008928 6.3e-37 157.5 98 78.6
A09p28840 Brassica napus HOM05D001705 ORTHO05D008928 6.3e-37 157.5 98 78.6
C09p36640 Brassica napus HOM05D001705 ORTHO05D008928 6.3e-37 157.5 98 78.6
BolC9t56496H Brassica oleracea HOM05D001705 ORTHO05D008928 6.3e-37 157.5 98 78.6
BraA09t38446Z Brassica rapa HOM05D001705 ORTHO05D008928 6.3e-37 157.5 98 78.6
AT4G10100 Arabidopsis thaliana HOM05D001705 ORTHO05D008928 1.1e-36 156.8 94 83.0
AL6G43910 Arabidopsis lyrata HOM05D001705 ORTHO05D008928 5.4e-36 154.5 95 83.2
CARHR261140 Cardamine hirsuta HOM05D001705 ORTHO05D008928 1.6e-35 152.9 96 82.3
Carub.0006s2867 Capsella rubella HOM05D001705 ORTHO05D008928 1.1e-33 146.7 94 79.8
THA.LOC104815816 Tarenaya hassleriana HOM05D001705 ORTHO05D008928 6.8e-31 137.5 102 65.7
MBI06_g14319_MAGBIO Magnolia biondii HOM05D001705 ORTHO05D008928 6.4e-29 131.0 100 66.0
Ah.13g075530 Amaranthus hybridus HOM05D001705 ORTHO05D008928 4.1e-28 128.3 88 67.0
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 1.2e-27 126.7 100 61.0
TAR628G0577 Trochodendron aralioides HOM05D001705 ORTHO05D008928 1.6e-27 126.3 88 65.9
Duzib106G1039 Durio zibethinus HOM05D001705 ORTHO05D008928 2.7e-27 125.6 81 69.1
ClCG08G000770 Citrullus lanatus HOM05D001705 ORTHO05D008928 3.5e-27 125.2 82 69.5
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 4.6e-27 124.8 100 60.0
AUR62028345 Chenopodium quinoa HOM05D001705 ORTHO05D008928 4.6e-27 124.8 86 66.3
CsaV3_5G039950 Cucumis sativus L. HOM05D001705 ORTHO05D008928 5.9e-27 124.4 103 61.2
Haze_13961 Corylus avellana HOM05D001705 ORTHO05D008953 1.0e-26 123.6 103 60.2
Dinv22114 Davidia involucrata HOM05D001705 ORTHO05D008928 1.0e-26 123.6 107 60.7
Lalb_Chr15g0079721 Lupinus albus HOM05D001705 ORTHO05D008928 1.0e-26 123.6 82 65.9
TWI81G0898 Tripterygium wilfordii HOM05D001705 ORTHO05D008928 1.0e-26 123.6 81 72.8
VMungo1080G1609 Vigna mungo HOM05D001705 ORTHO05D008928 1.0e-26 123.6 82 70.7
MELO3C022174.2 Cucumis melo HOM05D001705 ORTHO05D008928 1.3e-26 123.2 103 60.2
EL10Ac8g18938 Beta vulgaris HOM05D001705 ORTHO05D008928 1.7e-26 122.9 81 66.7
Phvul.L001622 Phaseolus vulgaris HOM05D001705 ORTHO05D008928 1.7e-26 122.9 82 69.5
Actinidia29374 Actinidia chinensis HOM05D001705 ORTHO05D008928 2.3e-26 122.5 106 57.5
Dinv37409 Davidia involucrata HOM05D001705 ORTHO05D008928 2.3e-26 122.5 81 71.6
TAR376G0455 Trochodendron aralioides HOM05D001705 ORTHO05D008928 2.3e-26 122.5 81 70.4
AUR62025342 Chenopodium quinoa HOM05D001705 ORTHO05D008928 3.0e-26 122.1 86 65.1
DCAR_003512 Daucus carota HOM05D001705 ORTHO05D008928 5.0e-26 121.3 94 57.4
Glyma.06G321300 Glycine max HOM05D001705 ORTHO05D008928 5.0e-26 121.3 82 70.7
Lj3g0024983 Lotus japonicus HOM05D001705 ORTHO05D008928 8.6e-26 120.6 86 66.3
Nn6g34378 Nelumbo nucifera HOM05D001705 ORTHO05D008928 8.6e-26 120.6 99 59.6
Cfa008073 Carpinus fangiana HOM05D001705 ORTHO05D008928 1.1e-25 120.2 81 69.1
Potri.019G070801 Populus trichocarpa HOM05D001705 ORTHO05D008928 1.1e-25 120.2 81 66.7
Sabra19G0082700 Salix brachista HOM05D001705 ORTHO05D008928 1.1e-25 120.2 81 66.7
Psat5g227400 Pisum sativum HOM05D001705 ORTHO05D008928 1.9e-25 119.4 85 65.9
Ciclev10022992m.g Citrus clementina HOM05D001705 ORTHO05D008928 2.5e-25 119.0 98 59.2
Medtr3g008540 Medicago truncatula HOM05D001705 ORTHO05D008928 2.5e-25 119.0 82 67.1
Gohir.A06G168000 Gossypium hirsutum HOM05D001705 ORTHO05D008928 3.3e-25 118.6 85 62.4
Sed0017068 Sechium edule HOM05D001705 ORTHO05D008928 3.3e-25 118.6 82 65.9
Cpa.g.sc21.88 Carica papaya HOM05D001705 ORTHO05D008928 4.3e-25 118.2 98 58.2
Gohir.D06G175400 Gossypium hirsutum HOM05D001705 ORTHO05D008928 4.3e-25 118.2 85 62.4
Gorai.010G205800 Gossypium raimondii HOM05D001705 ORTHO05D008928 4.3e-25 118.2 85 62.4
Lj3g0021440 Lotus japonicus HOM05D001705 ORTHO05D008928 4.3e-25 118.2 82 68.3
Thecc.08G179500 Theobroma cacao HOM05D001705 ORTHO05D008928 4.3e-25 118.2 84 64.3
PGR044G0661 Punica granatum HOM05D001705 ORTHO05D008928 9.5e-25 117.1 81 69.1
Aqoxy1G00582 Aquilegia oxysepala HOM05D001705 ORTHO05D008928 1.6e-24 116.3 82 64.6
CiPaw.03G013900 Carya illinoinensis HOM05D001705 ORTHO05D008928 1.6e-24 116.3 81 64.2
QL07p031108 Quercus lobata HOM05D001705 ORTHO05D008928 2.1e-24 115.9 81 66.7
CANSAT21G1408 Cannabis sativa HOM05D001705 ORTHO05D008928 2.8e-24 115.5 81 64.2
CANSAT21G2117 Cannabis sativa HOM05D001705 ORTHO05D008928 2.8e-24 115.5 81 64.2
Hma1.2p1_2213F.1_g317220 Hydrangea macrophylla HOM05D001705 ORTHO05D008928 2.8e-24 115.5 81 64.2
vmacro00942 Vaccinium macrocarpon HOM05D001705 ORTHO05D008928 2.8e-24 115.5 98 58.2
GSVIVG01036284001 Vitis vinifera HOM05D001705 ORTHO05D008928 2.8e-24 115.5 104 57.7
Eucgr.F02944 Eucalyptus grandis HOM05D001705 ORTHO05D008928 3.6e-24 115.2 105 54.3
HanXRQChr01g0026311 Helianthus annuus HOM05D001705 ORTHO05D008928 3.6e-24 115.2 81 63.0
Sc18g0002990 Simmondsia chinensis HOM05D001705 ORTHO05D008928 4.7e-24 114.8 102 53.9
MD10G1004200 Malus domestica HOM05D001705 ORTHO05D008928 6.2e-24 114.4 81 66.7
Manes.03G079500 Manihot esculenta HOM05D001705 ORTHO05D008928 6.2e-24 114.4 81 60.5
Rhsim12G0002800 Rhododendron simsii HOM05D001705 ORTHO05D008928 6.2e-24 114.4 103 54.4
MD05G1003200 Malus domestica HOM05D001705 ORTHO05D008928 8.0e-24 114.0 81 66.7
CDE11G0405 Ceratophyllum demersum HOM05D001705 ORTHO05D008928 1.0e-23 113.6 81 61.7
COL.COLO4_25141 Corchorus olitorius HOM05D001705 ORTHO05D008928 1.0e-23 113.6 100 55.0
FvH4_2g00750 Fragaria vesca HOM05D001705 ORTHO05D008928 1.0e-23 113.6 81 64.2
FAN24G2035 Fragaria x ananassa HOM05D001705 ORTHO05D008928 1.0e-23 113.6 81 64.2
FAN27G0168 Fragaria x ananassa HOM05D001705 ORTHO05D008928 1.0e-23 113.6 81 64.2
Hma1.2p1_0238F.1_g099670 Hydrangea macrophylla HOM05D001705 ORTHO05D008928 1.0e-23 113.6 81 63.0
CiPaw.10G112700 Carya illinoinensis HOM05D001705 ORTHO05D008928 1.4e-23 113.2 81 64.2
QL07p047839 Quercus lobata HOM05D001705 ORTHO05D008928 1.4e-23 113.2 81 64.2
RcHm_v2.0_Chr6g0251131 Rosa chinensis HOM05D001705 ORTHO05D008928 1.4e-23 113.2 81 64.2
SalBow7G0612 Salvia bowleyana HOM05D001705 ORTHO05D008928 1.4e-23 113.2 87 58.6
arahy.Tifrunner.gnm1.ann1.X4BGNP Arachis hypogaea HOM05D001705 ORTHO05D008928 1.8e-23 112.8 85 60.0
ECA248G1877 Erigeron canadensis HOM05D001705 ORTHO05D008928 1.8e-23 112.8 80 65.0
Migut.C01384 Erythranthe guttata HOM05D001705 ORTHO05D008928 3.1e-23 112.1 86 57.0
Atru.chr3.1320 Acer truncatum HOM05D001705 ORTHO05D008928 5.2e-23 111.3 81 64.2
Lsat_1_v5_gn_1_56320 Lactuca sativa HOM05D001705 ORTHO05D008928 5.2e-23 111.3 100 55.0
Prupe.8G006600 Prunus persica HOM05D001705 ORTHO05D008928 8.9e-23 110.5 81 63.0
MSTRG.5080 Avicennia marina HOM05D001705 ORTHO05D008928 1.2e-22 110.2 99 53.5
BolC2t10291H Brassica oleracea HOM05D001705 ORTHO05D008928 1.2e-22 110.2 76 76.3
unitig_8.g4896 Utricularia gibba HOM05D001705 ORTHO05D008928 2.6e-22 109.0 81 59.3
PSO339G0564 Papaver somniferum HOM05D001705 ORTHO05D008928 3.4e-22 108.6 82 64.6
Peaxi162Scf00078g00076 Petunia axillaris HOM05D001705 ORTHO05D008928 1.3e-21 106.7 105 51.4
Zm00001eb244080 Zea mays HOM05D001705 ORTHO05D008928 1.7e-21 106.3 79 63.3
CAN.G836.15 Capsicum annuum HOM05D001705 ORTHO05D008928 4.9e-21 104.8 95 51.6
PGSC0003DMG400010036 Solanum tuberosum HOM05D001705 ORTHO05D008928 6.4e-21 104.4 86 55.8
Zm00001eb182270 Zea mays HOM05D001705 ORTHO05D008928 8.3e-21 104.0 79 62.0
Nitab4.5_0007940g0020 Nicotiana tabacum HOM05D001705 ORTHO05D008928 1.9e-20 102.8 86 54.7
Sopen02g034700 Solanum pennellii HOM05D001705 ORTHO05D008928 2.4e-20 102.4 89 52.8
Nitab4.5_0003432g0050 Nicotiana tabacum HOM05D001705 ORTHO05D008928 5.4e-20 101.3 86 54.7
VMungo0464G0569 Vigna mungo HOM05D001705 ORTHO05D008928 1.6e-19 99.8 67 68.7
ATR0757G218 Amborella trichopoda HOM05D001705 ORTHO05D008928 6.0e-19 97.8 81 55.6
HPP92_013556 Vanilla planifolia HOM05D001705 ORTHO05D008928 6.0e-19 97.8 82 54.9
SEGI_06051 Sequoiadendron giganteum HOM05D001705 ORTHO05D008928 1.3e-18 96.7 81 54.3
SMO119G0349 Selaginella moellendorffii HOM05D001705 ORTHO05D008928 5.0e-18 94.7 81 50.6
SMO178G0001 Selaginella moellendorffii HOM05D001705 ORTHO05D008928 5.0e-18 94.7 81 50.6
Os02g0558300 Oryza sativa ssp. japonica HOM05D001705 ORTHO05D008928 1.1e-17 93.6 76 57.9
ATR1089G014 Amborella trichopoda HOM05D001705 ORTHO05D008928 3.3e-17 92.0 81 54.3
Pp3c24_14090 Physcomitrium patens HOM05D001705 ORTHO05D008928 9.5e-17 90.5 89 44.9
Mapoly0053s0105 Marchantia polymorpha HOM05D001705 ORTHO05D008928 6.2e-16 87.8 81 56.8
SHI16716 Sapria himalayana HOM05D001705 ORTHO05D008928 9.8e-14 80.5 81 45.7
Solyc02g090010.3 Solanum lycopersicum HOM05D001705 ORTHO05D008928 2.9e-13 79.0 62 56.5
CBR_g41370 Chara braunii HOM05D001705 ORTHO05D008928 3.9e-10 68.6 81 37.0
Cre08.g382545 Chlamydomonas reinhardtii HOM05D001705 ORTHO05D008928 3.3e-09 65.5 83 38.6
CBR_g5690 Chara braunii HOM05D001705 ORTHO05D008928 2.8e-08 62.4 79 39.2
MCO06G125 Micromonas commoda HOM05D001705 ORTHO05D008928 4.7e-08 61.6 84 42.9
BcaC03g16423 Brassica carinata HOM05D001705 ORTHO05D008928 1.1e-07 60.5 30 90.0


User provided reference genes

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