Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18841 Brassica carinata HOM05D000344 ORTHO05D032204 4.4e-101 371.3 191 100.0
Carub.0003s1411 Capsella rubella HOM05D000344 ORTHO05D005714 2.8e-55 219.2 199 69.3
C03p46950 Brassica napus HOM05D000344 ORTHO05D005714 4.8e-55 218.4 200 67.0
BolC3t16960H Brassica oleracea HOM05D000344 ORTHO05D005714 1.8e-54 216.5 200 66.5
Thhalv10020237m.g Eutrema salsugineum HOM05D000344 ORTHO05D005714 3.8e-52 208.8 197 69.0
Sp3g12690 Schrenkiella parvula HOM05D000344 ORTHO05D005714 2.7e-50 202.6 200 65.0
BcaC05g29086 Brassica carinata HOM05D000344 ORTHO05D005714 6.0e-50 201.4 200 64.0
C05p52940 Brassica napus HOM05D000344 ORTHO05D005714 7.9e-50 201.1 200 63.5
A05p34990 Brassica napus HOM05D000344 ORTHO05D005714 4.3e-48 195.3 201 62.7
BcaB06g25388 Brassica carinata HOM05D000344 ORTHO05D005714 1.3e-47 193.7 202 65.3
BolC5t33971H Brassica oleracea HOM05D000344 ORTHO05D005714 3.7e-47 192.2 187 64.2
AL3G26770 Arabidopsis lyrata HOM05D000344 ORTHO05D005714 3.1e-46 189.1 198 63.6
AT3G14400 Arabidopsis thaliana HOM05D000344 ORTHO05D005714 1.0e-44 184.1 198 62.6
BraA05t22313Z Brassica rapa HOM05D000344 ORTHO05D005714 3.8e-44 182.2 188 62.8
CARHR089380 Cardamine hirsuta HOM05D000344 ORTHO05D005714 1.6e-42 176.8 203 61.1
Aa31LG8G1660 Aethionema arabicum HOM05D000344 ORTHO05D005714 1.7e-31 140.2 201 50.7
THA.LOC104816057 Tarenaya hassleriana HOM05D000344 ORTHO05D005714 1.2e-21 107.5 185 44.9
THA.LOC104810408 Tarenaya hassleriana HOM05D000344 ORTHO05D005714 5.9e-21 105.1 196 41.8
TWI38G1884 Tripterygium wilfordii HOM05D000344 ORTHO05D005714 6.3e-15 85.1 140 41.4
Prupe.4G147900 Prunus persica HOM05D000344 ORTHO05D005714 1.1e-14 84.3 124 46.0
BcaC01g03934 Brassica carinata HOM05D000344 ORTHO05D032204 5.3e-14 82.0 59 76.3
A03p38790 Brassica napus HOM05D000344 ORTHO05D032204 7.0e-14 81.6 87 57.5
MD05G1209600 Malus domestica HOM05D000344 ORTHO05D005714 1.3e-12 77.4 121 46.3
MD10G1195900 Malus domestica HOM05D000344 ORTHO05D005714 3.8e-12 75.9 121 44.6
PSO541G2182 Papaver somniferum HOM05D000344 ORTHO05D005714 3.8e-12 75.9 85 47.1
Rhsim04G0032900 Rhododendron simsii HOM05D000344 ORTHO05D005714 1.1e-11 74.3 118 42.4
Aqoxy4G00022 Aquilegia oxysepala HOM05D000344 ORTHO05D005714 2.5e-11 73.2 92 44.6
Eucgr.F01414 Eucalyptus grandis HOM05D000344 ORTHO05D005714 7.2e-11 71.6 164 38.4
Thecc.07G147700 Theobroma cacao HOM05D000344 ORTHO05D005714 7.2e-11 71.6 109 41.3
Ca_03461_v3 Cicer arietinum L. HOM05D000753 ORTHO05D005714 1.2e-10 70.9 125 38.4
Medtr2g070390 Medicago truncatula HOM05D000344 ORTHO05D005714 1.2e-10 70.9 129 41.1
Duzib268G0479 Durio zibethinus HOM05D000344 ORTHO05D005714 2.1e-10 70.1 111 42.3
MBI18_g24477_MAGBIO Magnolia biondii HOM05D000344 ORTHO05D005714 2.1e-10 70.1 88 45.5
COL.COLO4_17404 Corchorus olitorius HOM05D000344 ORTHO05D005714 4.7e-10 68.9 105 41.0
Duzib213G0656 Durio zibethinus HOM05D000344 ORTHO05D005714 4.7e-10 68.9 101 43.6
Gorai.004G270900 Gossypium raimondii HOM05D000344 ORTHO05D005714 4.7e-10 68.9 88 45.5
Potri.011G112800 Populus trichocarpa HOM05D000344 ORTHO05D005714 4.7e-10 68.9 140 38.6
Manes.03G083600 Manihot esculenta HOM05D000344 ORTHO05D005714 1.0e-09 67.8 127 38.6
Hma1.2p1_2826F.1_g329100 Hydrangea macrophylla HOM05D000344 ORTHO05D005714 1.4e-09 67.4 122 40.2
Gohir.D08G254000 Gossypium hirsutum HOM05D000344 ORTHO05D005714 1.8e-09 67.0 88 45.5
SGA_v2.0_scaffold181G39774 Striga asiatica HOM05D000753 ORTHO05D005714 1.8e-09 67.0 128 35.9
ClCG07G010590 Citrullus lanatus HOM05D000344 ORTHO05D005714 4.0e-09 65.9 189 33.3
Psat1g010800 Pisum sativum HOM05D000344 ORTHO05D005714 4.0e-09 65.9 119 39.5
Sabra11G0099800 Salix brachista HOM05D000344 ORTHO05D005714 4.0e-09 65.9 157 36.3
CsaV3_4G007730 Cucumis sativus L. HOM05D000344 ORTHO05D005714 5.2e-09 65.5 190 32.1
Sc07g0003100 Simmondsia chinensis HOM05D000344 ORTHO05D005714 8.8e-09 64.7 192 32.8
Duzib187G1053 Durio zibethinus HOM05D000344 ORTHO05D005714 1.2e-08 64.3 91 42.9
Glyma.15G251100 Glycine max HOM05D000344 ORTHO05D005714 1.2e-08 64.3 108 39.8
Gohir.A08G233800 Gossypium hirsutum HOM05D000344 ORTHO05D005714 1.2e-08 64.3 87 43.7
Sed0018561 Sechium edule HOM05D000344 ORTHO05D005714 1.5e-08 63.9 187 33.7
Dinv26659 Davidia involucrata HOM05D000344 ORTHO05D005714 2.6e-08 63.2 126 36.5
Manes.15G101800 Manihot esculenta HOM05D000344 ORTHO05D005714 4.4e-08 62.4 197 33.0
MELO3C016165.2 Cucumis melo HOM05D000344 ORTHO05D005714 5.7e-08 62.0 183 31.7
unitig_37.g12554 Utricularia gibba HOM05D000344 ORTHO05D005714 7.5e-08 61.6 111 35.1
Ah.06g187440 Amaranthus hybridus HOM05D000344 ORTHO05D005714 1.3e-07 60.8 93 45.2
Potri.001G394600 Populus trichocarpa HOM05D000344 ORTHO05D005714 1.7e-07 60.5 194 33.5
MSTRG.15003 Avicennia marina HOM05D000344 ORTHO05D005714 2.2e-07 60.1 100 41.0
Nn3g20391 Nelumbo nucifera HOM05D000344 ORTHO05D005714 2.2e-07 60.1 200 35.5
Oeu050688.1 Olea europaea HOM05D000344 ORTHO05D005714 2.2e-07 60.1 181 33.1
RcHm_v2.0_Chr5g0027541 Rosa chinensis HOM05D000344 ORTHO05D005714 3.7e-07 59.3 186 34.4
Sabra16G0258900 Salix brachista HOM05D000344 ORTHO05D005714 3.7e-07 59.3 176 34.1
ECA236G0178 Erigeron canadensis HOM05D000344 ORTHO05D005714 4.8e-07 58.9 104 38.5
Gohir.A04G047300 Gossypium hirsutum HOM05D000344 ORTHO05D005714 4.8e-07 58.9 97 40.2
Gohir.D05G332900 Gossypium hirsutum HOM05D000344 ORTHO05D005714 4.8e-07 58.9 97 40.2
MSTRG.6703 Avicennia marina HOM05D000344 ORTHO05D005714 6.3e-07 58.5 129 35.7
Migut.M00664 Erythranthe guttata HOM05D000344 ORTHO05D005714 6.3e-07 58.5 128 33.6
Gorai.009G358000 Gossypium raimondii HOM05D000344 ORTHO05D005714 6.3e-07 58.5 97 40.2
SalBow6G7221 Salvia bowleyana HOM05D000344 ORTHO05D005714 6.3e-07 58.5 129 33.3
SalBow8G3600 Salvia bowleyana HOM05D000344 ORTHO05D005714 6.3e-07 58.5 129 33.3
CDE05G3577 Ceratophyllum demersum HOM05D000344 ORTHO05D005714 8.3e-07 58.2 78 43.6
Ciclev10019218m.g Citrus clementina HOM05D000344 ORTHO05D005714 1.1e-06 57.8 181 34.8
Atru.chr2.1804 Acer truncatum HOM05D000344 ORTHO05D005714 1.8e-06 57.0 167 31.1
RcHm_v2.0_Chr5g0027521 Rosa chinensis HOM05D000344 ORTHO05D005714 1.8e-06 57.0 82 46.3
CSS0003213 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D005714 2.4e-06 56.6 203 31.5
Lsat_1_v5_gn_7_99581 Lactuca sativa HOM05D000344 ORTHO05D005714 4.1e-06 55.8 71 43.7
Cc05_g10140 Coffea canephora HOM05D000344 ORTHO05D005714 5.4e-06 55.5 190 29.5


User provided reference genes

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