Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18835 Brassica carinata HOM05D005200 ORTHO05D005760 8.1e-73 276.9 137 100.0
Sp3g12570 Schrenkiella parvula HOM05D005200 ORTHO05D005760 6.5e-54 214.2 124 85.5
BcaB06g25397 Brassica carinata HOM05D005200 ORTHO05D005760 5.5e-53 211.1 125 85.6
A01p39430 Brassica napus HOM05D005200 ORTHO05D005760 1.0e-51 206.8 124 84.7
BraA01t03983Z Brassica rapa HOM05D005200 ORTHO05D005760 1.0e-51 206.8 124 84.7
BraA05t22323Z Brassica rapa HOM05D005200 ORTHO05D005760 1.3e-49 199.9 125 83.2
Thhalv10021716m.g Eutrema salsugineum HOM05D005200 ORTHO05D005760 2.8e-49 198.7 125 82.4
BcaC05g29096 Brassica carinata HOM05D005200 ORTHO05D005760 6.3e-49 197.6 125 80.8
C05p53060 Brassica napus HOM05D005200 ORTHO05D005760 6.3e-49 197.6 125 80.8
BolC5t33987H Brassica oleracea HOM05D005200 ORTHO05D005760 6.3e-49 197.6 125 80.8
AL3G26600 Arabidopsis lyrata HOM05D005200 ORTHO05D005760 1.8e-48 196.1 123 81.3
C01p50260 Brassica napus HOM05D005200 ORTHO05D005760 1.8e-48 196.1 124 82.3
BolC1t04981H Brassica oleracea HOM05D005200 ORTHO05D005760 1.8e-48 196.1 124 82.3
A05p35100 Brassica napus HOM05D005200 ORTHO05D005760 5.3e-48 194.5 125 81.6
BcaC09g48397 Brassica carinata HOM05D005200 ORTHO05D005760 2.6e-47 192.2 124 80.6
Carub.0003s1397 Capsella rubella HOM05D005200 ORTHO05D005760 3.4e-47 191.8 119 83.2
CARHR089210 Cardamine hirsuta HOM05D005200 ORTHO05D005760 2.9e-46 188.7 123 78.9
AT3G14280 Arabidopsis thaliana HOM05D005200 ORTHO05D005760 5.0e-46 188.0 122 79.5
Aa31LG8G1550 Aethionema arabicum HOM05D005200 ORTHO05D005760 1.0e-38 163.7 113 73.5
THA.LOC104822615 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 1.9e-37 159.5 110 64.5
THA.LOC104810392 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 1.0e-35 153.7 120 61.7
THA.LOC104815599 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 2.4e-32 142.5 120 60.8
CANSAT56G3023 Cannabis sativa HOM05D005200 ORTHO05D005760 7.0e-16 87.8 84 51.2
Actinidia31148 Actinidia chinensis HOM05D005200 ORTHO05D005760 1.7e-14 83.2 95 43.2
Dinv20386 Davidia involucrata HOM05D005200 ORTHO05D005760 1.7e-14 83.2 88 47.7
ClCG09G001380 Citrullus lanatus HOM05D005200 ORTHO05D005760 2.2e-14 82.8 81 51.9
Haze_16132 Corylus avellana HOM05D005200 ORTHO05D005760 2.9e-14 82.4 81 54.3
Actinidia26000 Actinidia chinensis HOM05D005200 ORTHO05D005760 5.0e-14 81.6 86 47.7
Duzib235G1369 Durio zibethinus HOM05D005200 ORTHO05D005760 6.5e-14 81.3 108 44.4
TWI14G0574 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 1.1e-13 80.5 86 48.8
CiPaw.02G131300 Carya illinoinensis HOM05D005200 ORTHO05D005760 1.5e-13 80.1 92 43.5
Oeu008400.1 Olea europaea HOM05D005200 ORTHO05D005760 2.5e-13 79.3 81 49.4
PSO135G0283 Papaver somniferum HOM05D005200 ORTHO05D005760 2.5e-13 79.3 94 45.7
TWI23G1266 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 3.2e-13 79.0 86 44.2
Manes.11G013000 Manihot esculenta HOM05D005200 ORTHO05D005760 4.2e-13 78.6 86 47.7
Gorai.010G173300 Gossypium raimondii HOM05D005200 ORTHO05D005760 7.2e-13 77.8 88 44.3
SalBow7G2254 Salvia bowleyana HOM05D005200 ORTHO05D005760 7.2e-13 77.8 69 55.1
Dinv37821 Davidia involucrata HOM05D005200 ORTHO05D005760 1.2e-12 77.0 88 44.3
RcHm_v2.0_Chr2g0147821 Rosa chinensis HOM05D005200 ORTHO05D005760 1.2e-12 77.0 101 44.6
Ciclev10026732m.g Citrus clementina HOM05D005200 ORTHO05D005760 2.1e-12 76.3 110 40.9
Duzib160G0856 Durio zibethinus HOM05D005200 ORTHO05D005760 2.7e-12 75.9 112 40.2
Nn6g35724 Nelumbo nucifera HOM05D005200 ORTHO05D005760 2.7e-12 75.9 106 46.2
Sed0021338 Sechium edule HOM05D005200 ORTHO05D005760 2.7e-12 75.9 63 58.7
FAN02G2923 Fragaria x ananassa HOM05D005200 ORTHO05D005760 3.6e-12 75.5 100 43.0
FAN14G3672 Fragaria x ananassa HOM05D005200 ORTHO05D005760 3.6e-12 75.5 100 43.0
Gohir.A06G143500 Gossypium hirsutum HOM05D005200 ORTHO05D005760 3.6e-12 75.5 112 37.5
GSVIVG01016673001 Vitis vinifera HOM05D005200 ORTHO05D005760 3.6e-12 75.5 81 43.2
FvH4_6g35780 Fragaria vesca HOM05D005200 ORTHO05D005760 4.7e-12 75.1 100 43.0
FAN14G2768 Fragaria x ananassa HOM05D005200 ORTHO05D005760 4.7e-12 75.1 100 43.0
Gohir.A09G075600 Gossypium hirsutum HOM05D005200 ORTHO05D005760 4.7e-12 75.1 101 42.6
Thecc.06G129700 Theobroma cacao HOM05D005200 ORTHO05D005760 4.7e-12 75.1 112 38.4
TPR.G18172 Trifolium pratense HOM05D005200 ORTHO05D005760 4.7e-12 75.1 72 51.4
MELO3C024308.2 Cucumis melo HOM05D005200 ORTHO05D005760 6.1e-12 74.7 106 42.5
TAR626G1734 Trochodendron aralioides HOM05D005200 ORTHO05D005760 6.1e-12 74.7 112 43.8
Cfa003464 Carpinus fangiana HOM05D005200 ORTHO05D005760 8.0e-12 74.3 60 56.7
Migut.I01128 Erythranthe guttata HOM05D005200 ORTHO05D005760 8.0e-12 74.3 70 50.0
FAN09G2652 Fragaria x ananassa HOM05D005200 ORTHO05D005760 8.0e-12 74.3 100 43.0
MSTRG.4536 Avicennia marina HOM05D005200 ORTHO05D005760 1.0e-11 73.9 117 40.2
Gohir.D09G075300 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.0e-11 73.9 101 41.6
Gorai.006G090400 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.0e-11 73.9 101 41.6
Potri.003G072400 Populus trichocarpa HOM05D005200 ORTHO05D005760 1.0e-11 73.9 65 46.2
CiPaw.01G211800 Carya illinoinensis HOM05D005200 ORTHO05D005760 1.4e-11 73.6 81 44.4
MSTRG.10915 Avicennia marina HOM05D005200 ORTHO05D005760 3.0e-11 72.4 75 48.0
QL05p001275 Quercus lobata HOM05D005200 ORTHO05D005760 4.0e-11 72.0 82 46.3
Sabra03G0043200 Salix brachista HOM05D005200 ORTHO05D005760 4.0e-11 72.0 92 39.1
Atru.chr1.4140 Acer truncatum HOM05D005200 ORTHO05D005760 5.2e-11 71.6 66 50.0
Actinidia21832 Actinidia chinensis HOM05D005200 ORTHO05D005760 5.2e-11 71.6 84 40.5
CsaV3_7G033950 Cucumis sativus L. HOM05D005200 ORTHO05D005760 5.2e-11 71.6 86 46.5
Nitab4.5_0008798g0020 Nicotiana tabacum HOM05D005200 ORTHO05D005760 5.2e-11 71.6 79 48.1
MD09G1173200 Malus domestica HOM05D005200 ORTHO05D005760 8.8e-11 70.9 107 40.2
Oeu015475.1 Olea europaea HOM05D005200 ORTHO05D005760 8.8e-11 70.9 107 37.4
PGSC0003DMG402028848 Solanum tuberosum HOM05D005200 ORTHO05D005760 8.8e-11 70.9 70 48.6
Cpa.g.sc25.187 Carica papaya HOM05D005200 ORTHO05D005760 1.2e-10 70.5 57 56.1
Cc04_g00760 Coffea canephora HOM05D005200 ORTHO05D005760 1.2e-10 70.5 118 38.1
Eucgr.I02161 Eucalyptus grandis HOM05D005200 ORTHO05D005760 1.2e-10 70.5 88 40.9
MD17G1154100 Malus domestica HOM05D005200 ORTHO05D005760 1.2e-10 70.5 76 50.0
Rhsim08G0244400 Rhododendron simsii HOM05D005200 ORTHO05D005760 1.2e-10 70.5 105 39.0
SalBow6G5493 Salvia bowleyana HOM05D005200 ORTHO05D005760 1.5e-10 70.1 60 58.3
FAN05G3446 Fragaria x ananassa HOM05D005200 ORTHO05D005760 2.0e-10 69.7 104 41.3
Gorai.011G055500 Gossypium raimondii HOM05D005200 ORTHO05D005760 2.0e-10 69.7 104 39.4
PGR119G0182 Punica granatum HOM05D005200 ORTHO05D005760 2.0e-10 69.7 107 42.1
Solyc12g055700.3 Solanum lycopersicum HOM05D005200 ORTHO05D005760 2.6e-10 69.3 67 49.3
VMungo0331G0914 Vigna mungo HOM05D005200 ORTHO05D005760 2.6e-10 69.3 90 42.2
Prupe.3G031300 Prunus persica HOM05D005200 ORTHO05D005760 3.4e-10 68.9 102 45.1
Sopen12g024150 Solanum pennellii HOM05D005200 ORTHO05D005760 3.4e-10 68.9 67 47.8
Peaxi162Scf00038g02243 Petunia axillaris HOM05D005200 ORTHO05D005760 4.4e-10 68.6 77 41.6
PGSC0003DMG400009175 Solanum tuberosum HOM05D005200 ORTHO05D005760 4.4e-10 68.6 57 52.6
Glyma.16G013600 Glycine max HOM05D005200 ORTHO05D005760 5.7e-10 68.2 82 46.3
Gohir.A10G047648 Gossypium hirsutum HOM05D005200 ORTHO05D005760 5.7e-10 68.2 127 36.2
Manes.04G150600 Manihot esculenta HOM05D005200 ORTHO05D005760 7.5e-10 67.8 85 44.7
Phvul.010G123400 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 7.5e-10 67.8 55 54.5
vmacro15084 Vaccinium macrocarpon HOM05D005200 ORTHO05D005760 7.5e-10 67.8 88 42.0
arahy.Tifrunner.gnm1.ann1.56RDUW Arachis hypogaea HOM05D005200 ORTHO05D005760 9.8e-10 67.4 76 51.3
arahy.Tifrunner.gnm1.ann1.KXG0W2 Arachis hypogaea HOM05D005200 ORTHO05D005760 1.3e-09 67.0 76 52.6
Gohir.D10G051950 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.3e-09 67.0 104 38.5
Gohir.D06G148800 Gossypium hirsutum HOM05D005200 ORTHO05D005760 2.2e-09 66.2 60 51.7
AUR62001409 Chenopodium quinoa HOM05D000001 ORTHO05D009753 2.8e-09 65.9 88 44.3
AUR62025618 Chenopodium quinoa HOM05D000001 ORTHO05D009753 3.7e-09 65.5 110 39.1
COL.COLO4_30860 Corchorus olitorius HOM05D005200 ORTHO05D005760 3.7e-09 65.5 84 42.9
VMungo1309G1714 Vigna mungo HOM05D005200 ORTHO05D005760 4.8e-09 65.1 97 40.2
Sabra01G0129600 Salix brachista HOM05D005200 ORTHO05D005760 8.3e-09 64.3 60 46.7
ATR0099G034 Amborella trichopoda HOM05D005200 ORTHO05D005760 1.1e-08 63.9 75 49.3
Solyc03g123580.4 Solanum lycopersicum HOM05D005200 ORTHO05D005760 1.1e-08 63.9 58 51.7
Sopen03g041350 Solanum pennellii HOM05D005200 ORTHO05D005760 1.1e-08 63.9 58 51.7
Glyma.19G262400 Glycine max HOM05D005200 ORTHO05D005760 1.4e-08 63.5 99 39.4
Potri.001G163100 Populus trichocarpa HOM05D005200 ORTHO05D005760 1.8e-08 63.2 84 39.3
DCAR_007659 Daucus carota HOM05D005200 ORTHO05D005760 2.4e-08 62.8 81 38.3
HanXRQChr10g0311991 Helianthus annuus HOM05D005200 ORTHO05D005760 3.1e-08 62.4 54 53.7
arahy.Tifrunner.gnm1.ann1.F1PVR5 Arachis hypogaea HOM05D005200 ORTHO05D005760 5.4e-08 61.6 105 33.3
Os06g0193300 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 5.4e-08 61.6 76 40.8
Lalb_Chr10g0101121 Lupinus albus HOM05D005200 ORTHO05D005760 7.0e-08 61.2 100 39.0
arahy.Tifrunner.gnm1.ann1.7PP1M3 Arachis hypogaea HOM05D005200 ORTHO05D005760 9.1e-08 60.8 108 36.1
Lj3g0024707 Lotus japonicus HOM05D005200 ORTHO05D005760 9.1e-08 60.8 101 41.6
Lalb_Chr15g0076711 Lupinus albus HOM05D005200 ORTHO05D005760 9.1e-08 60.8 59 49.2
MBI19_g32869_MAGBIO Magnolia biondii HOM05D005200 ORTHO05D005760 9.1e-08 60.8 103 36.9
Aqoxy7G04178 Aquilegia oxysepala HOM05D005200 ORTHO05D005760 1.2e-07 60.5 67 46.3
Medtr7g117550 Medicago truncatula HOM05D005200 ORTHO05D005760 1.2e-07 60.5 85 42.4
Glyma.03G263400 Glycine max HOM05D005200 ORTHO05D005760 1.6e-07 60.1 99 39.4
Lsat_1_v5_gn_4_92221 Lactuca sativa HOM05D005200 ORTHO05D005760 1.6e-07 60.1 70 50.0
Lalb_Chr04g0261221 Lupinus albus HOM05D005200 ORTHO05D005760 1.6e-07 60.1 93 34.4
Ah.08g217360 Amaranthus hybridus HOM05D005200 ORTHO05D005760 2.0e-07 59.7 108 35.2
Lj1g0005720 Lotus japonicus HOM05D005200 ORTHO05D005760 2.0e-07 59.7 60 45.0
Lsat_1_v5_gn_5_137940 Lactuca sativa HOM05D005200 ORTHO05D005760 2.7e-07 59.3 62 53.2
Phvul.009G261901 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 2.7e-07 59.3 55 50.9
HanXRQChr09g0277231 Helianthus annuus HOM05D005200 ORTHO05D005760 3.5e-07 58.9 68 48.5
Zm00001eb278460 Zea mays HOM05D005200 ORTHO05D005760 4.5e-07 58.5 100 37.0
Os02g0782900 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 7.7e-07 57.8 87 40.2
HPP92_005865 Vanilla planifolia HOM05D005200 ORTHO05D005760 7.7e-07 57.8 56 46.4
SGA_v2.0_scaffold71G23919 Striga asiatica HOM05D005200 ORTHO05D005760 1.0e-06 57.4 47 53.2
ECA234G4728 Erigeron canadensis HOM05D005200 ORTHO05D005760 1.3e-06 57.0 54 48.1
Pp3c22_2900 Physcomitrium patens HOM05D023101 ORTHO05D005760 2.3e-06 56.2 102 35.3
Glyma.07G045700 Glycine max HOM05D005200 ORTHO05D005760 6.6e-06 54.7 60 46.7
Pp3c19_6810 Physcomitrium patens HOM05D023101 ORTHO05D005760 8.6e-06 54.3 36 58.3


User provided reference genes

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