Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18824 Brassica carinata HOM05D007739 ORTHO05D009838 4.1e-110 401.4 197 100.0
A03p38660 Brassica napus HOM05D007739 ORTHO05D009838 9.2e-94 347.1 193 89.6
BraA03t13013Z Brassica rapa HOM05D007739 ORTHO05D009838 9.2e-94 347.1 193 89.6
BolC3t16943H Brassica oleracea HOM05D007739 ORTHO05D009838 1.4e-89 333.2 192 89.6
BcaC01g03953 Brassica carinata HOM05D007739 ORTHO05D009838 2.3e-89 332.4 194 88.1
C03p46780 Brassica napus HOM05D007739 ORTHO05D009838 7.5e-88 327.4 192 88.5
Sp3g12450 Schrenkiella parvula HOM05D007739 ORTHO05D009838 2.4e-86 322.4 195 86.2
Thhalv10021564m.g Eutrema salsugineum HOM05D007739 ORTHO05D009838 2.5e-83 312.4 198 80.8
AL3G26440 Arabidopsis lyrata HOM05D007739 ORTHO05D009838 1.4e-81 306.6 198 78.8
AT3G14190 Arabidopsis thaliana HOM05D007739 ORTHO05D009838 8.3e-79 297.4 199 77.4
C01p50440 Brassica napus HOM05D007739 ORTHO05D009838 1.2e-72 276.9 196 78.1
BcaNung07312 Brassica carinata HOM05D007739 ORTHO05D009838 3.4e-72 275.4 196 76.5
CARHR089070 Cardamine hirsuta HOM05D007739 ORTHO05D009838 9.3e-70 267.3 206 70.4
Carub.0003s1380 Capsella rubella HOM05D007739 ORTHO05D009838 1.6e-69 266.5 191 75.9
BolC1t04996H Brassica oleracea HOM05D007739 ORTHO05D009838 6.0e-69 264.6 201 74.6
A01p39500 Brassica napus HOM05D007739 ORTHO05D009838 1.3e-60 236.9 193 68.4
BraA01t03991Z Brassica rapa HOM05D007739 ORTHO05D009838 1.5e-59 233.4 193 66.8
THA.LOC104815614 Tarenaya hassleriana HOM05D007739 ORTHO05D009838 6.5e-47 191.4 193 57.0
THA.LOC104815612 Tarenaya hassleriana HOM05D007739 ORTHO05D009838 7.1e-46 188.0 193 56.5
BcaC08g44770 Brassica carinata HOM05D007739 ORTHO05D009838 3.2e-38 162.5 102 78.4
Aa31LG8G1440 Aethionema arabicum HOM05D007739 ORTHO05D009838 2.7e-37 159.5 110 73.6
C06p23400 Brassica napus HOM05D007739 ORTHO05D009838 2.7e-37 159.5 102 77.5
BolC6t37514H Brassica oleracea HOM05D007739 ORTHO05D009838 2.7e-37 159.5 102 77.5
Thhalv10014740m.g Eutrema salsugineum HOM05D007739 ORTHO05D009838 7.7e-32 141.4 201 45.8
AL6G23160 Arabidopsis lyrata HOM05D007739 ORTHO05D009838 2.2e-31 139.8 201 45.3
Aa31LG3G14870 Aethionema arabicum HOM05D007739 ORTHO05D009838 4.6e-29 132.1 198 44.9
AT5G12360 Arabidopsis thaliana HOM05D007739 ORTHO05D009838 7.9e-29 131.3 202 44.1
A10p25460 Brassica napus HOM05D007739 ORTHO05D009838 7.9e-29 131.3 197 42.6
Sp6g31280 Schrenkiella parvula HOM05D007739 ORTHO05D009838 6.7e-28 128.3 200 44.0
BolC9t59287H Brassica oleracea HOM05D007739 ORTHO05D009838 1.5e-27 127.1 198 41.9
C09p64530 Brassica napus HOM05D007739 ORTHO05D009838 9.7e-27 124.4 198 41.4
BraA10t44610Z Brassica rapa HOM05D007739 ORTHO05D009838 1.2e-24 117.5 197 40.6
CARHR200750 Cardamine hirsuta HOM05D007739 ORTHO05D009838 2.0e-24 116.7 175 45.1
C05p53450 Brassica napus HOM05D007739 ORTHO05D009838 5.9e-24 115.2 71 77.5
BolC5t34022H Brassica oleracea HOM05D007739 ORTHO05D009838 5.9e-24 115.2 71 77.5
A05p35270 Brassica napus HOM05D007739 ORTHO05D009838 7.2e-22 108.2 62 83.9
Migut.D00651 Erythranthe guttata HOM05D007739 ORTHO05D009838 2.3e-20 103.2 209 36.4
CSS0046040 Camellia sinensis var. sinensis HOM05D007739 ORTHO05D009838 8.8e-20 101.3 202 37.1
DCAR_002115 Daucus carota HOM05D007739 ORTHO05D009838 1.5e-19 100.5 208 33.7
Dinv36186 Davidia involucrata HOM05D002367 ORTHO05D002566 3.3e-19 99.4 188 39.4
Glyma.14G034000 Glycine max HOM05D007739 ORTHO05D009838 4.4e-19 99.0 191 37.2
Glyma.02G280600 Glycine max HOM05D007739 ORTHO05D009838 5.7e-19 98.6 191 35.6
Phvul.008G200100 Phaseolus vulgaris HOM05D007739 ORTHO05D009838 5.7e-19 98.6 187 35.8
Peaxi162Scf00469g00320 Petunia axillaris HOM05D007739 ORTHO05D009838 1.3e-18 97.4 193 36.8
CiPaw.14G114800 Carya illinoinensis HOM05D007739 ORTHO05D009838 2.2e-18 96.7 206 37.4
BcaB01g01094 Brassica carinata HOM05D000457 ORTHO05D003394 2.8e-18 96.3 61 80.3
BcaB04g17497 Brassica carinata HOM05D007739 ORTHO05D009838 4.8e-18 95.5 62 75.8
Nitab4.5_0001095g0030 Nicotiana tabacum HOM05D007739 ORTHO05D009838 6.3e-18 95.1 200 36.0
Cfa009840 Carpinus fangiana HOM05D007739 ORTHO05D009838 1.1e-17 94.4 194 34.5
Ca_06221_v3 Cicer arietinum L. HOM05D007739 ORTHO05D009838 5.3e-17 92.0 187 35.3
LjContig00049g0023861 Lotus japonicus HOM05D007739 ORTHO05D009838 7.0e-17 91.7 195 32.8
BcaB01g02116 Brassica carinata HOM05D007739 ORTHO05D009838 2.0e-16 90.1 53 79.2
TAR633G0364 Trochodendron aralioides HOM05D007739 ORTHO05D009838 2.6e-16 89.7 195 34.4
C04p20650 Brassica napus HOM05D007739 ORTHO05D009838 1.3e-15 87.4 51 82.4
Cc01_g05640 Coffea canephora HOM05D007739 ORTHO05D009838 3.8e-15 85.9 201 36.8
Sc03g0010980 Simmondsia chinensis HOM05D007739 ORTHO05D009838 5.0e-15 85.5 191 32.5
BcaC06g35816 Brassica carinata HOM05D007739 ORTHO05D039970 8.5e-15 84.7 53 81.1
C03p78450 Brassica napus HOM05D007739 ORTHO05D009838 8.5e-15 84.7 52 76.9
Actinidia11663 Actinidia chinensis HOM05D007739 ORTHO05D009838 1.1e-14 84.3 157 38.2
GSVIVG01037253001 Vitis vinifera HOM05D007739 ORTHO05D009838 1.5e-14 84.0 196 35.7
C04p31590 Brassica napus HOM05D007739 ORTHO05D009838 1.9e-14 83.6 51 80.4
PGR119G1777 Punica granatum HOM05D007739 ORTHO05D009838 1.9e-14 83.6 202 33.2
C07p10560 Brassica napus HOM05D007739 ORTHO05D039970 2.5e-14 83.2 53 81.1
Potri.009G072000 Populus trichocarpa HOM05D007739 ORTHO05D009838 7.2e-14 81.6 199 32.7
BcaB01g02117 Brassica carinata HOM05D007739 ORTHO05D009838 9.4e-14 81.3 51 78.4
Haze_23208 Corylus avellana HOM05D007739 ORTHO05D009838 9.4e-14 81.3 135 38.5
SalBow6G6289 Salvia bowleyana HOM05D007739 ORTHO05D009838 9.4e-14 81.3 220 32.3
Lsat_1_v5_gn_5_70921 Lactuca sativa HOM05D007739 ORTHO05D009838 1.2e-13 80.9 195 34.4
Nitab4.5_0006104g0010 Nicotiana tabacum HOM05D007739 ORTHO05D009838 1.2e-13 80.9 224 33.5
BcaC02g10206 Brassica carinata HOM05D007739 ORTHO05D009838 1.6e-13 80.5 51 78.4
C09p20660 Brassica napus HOM05D007739 ORTHO05D009838 2.1e-13 80.1 46 80.4
Rhsim01G0194300 Rhododendron simsii HOM05D007739 ORTHO05D009838 2.7e-13 79.7 192 35.4
VMungo0647G2062 Vigna mungo HOM05D007739 ORTHO05D009838 3.6e-13 79.3 247 29.1
BcaC05g28187 Brassica carinata HOM05D007739 ORTHO05D009838 4.7e-13 79.0 67 70.1
C05p42330 Brassica napus HOM05D007739 ORTHO05D009838 4.7e-13 79.0 67 70.1
PGSC0003DMG400020420 Solanum tuberosum HOM05D007739 ORTHO05D009838 4.7e-13 79.0 196 35.7
ECA233G0993 Erigeron canadensis HOM05D007739 ORTHO05D009838 8.0e-13 78.2 182 33.5
Sopen07g027120 Solanum pennellii HOM05D007739 ORTHO05D009838 1.0e-12 77.8 200 36.0
Cpa.g.sc157.69 Carica papaya HOM05D007739 ORTHO05D009838 6.7e-12 75.1 194 33.5
Oeu001493.2 Olea europaea HOM05D007739 ORTHO05D009838 1.5e-11 73.9 215 30.7
Solyc07g055110.3 Solanum lycopersicum HOM05D007739 ORTHO05D009838 1.5e-11 73.9 200 35.5
TPR.G19359 Trifolium pratense HOM05D007739 ORTHO05D009838 2.6e-11 73.2 187 31.6
TAR633G2358 Trochodendron aralioides HOM05D007739 ORTHO05D009838 1.1e-09 67.8 197 30.5
BcaB01g02115 Brassica carinata HOM05D007739 ORTHO05D009838 7.0e-09 65.1 39 76.9
unitig_578.g16651 Utricularia gibba HOM05D007739 ORTHO05D009838 7.0e-09 65.1 196 33.7
SGA_v2.0_scaffold29G12264 Striga asiatica HOM05D007739 ORTHO05D009838 9.1e-09 64.7 199 30.7
MSTRG.21351 Avicennia marina HOM05D007739 ORTHO05D009838 1.7e-07 60.5 232 28.0
Nn7g36621 Nelumbo nucifera HOM05D007739 ORTHO05D009838 1.7e-07 60.5 119 37.8


User provided reference genes

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