Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 1.0e-168 596.7 310 100.0
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 2.8e-145 518.8 321 89.1
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 1.5e-143 513.1 320 87.2
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 1.9e-141 506.1 328 85.1
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 3.2e-141 505.4 319 86.8
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 3.2e-141 505.4 329 84.8
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 1.2e-132 476.9 315 82.9
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 1.2e-132 476.9 315 82.9
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 4.3e-130 468.4 323 79.3
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 4.3e-130 468.4 323 79.3
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 2.1e-129 466.1 321 78.5
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 4.8e-129 464.9 318 79.6
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 5.3e-128 461.5 321 77.9
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 3.4e-127 458.8 329 77.5
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 4.2e-125 451.8 316 77.5
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 4.3e-122 441.8 315 77.8
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 5.5e-117 424.9 322 74.8
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 1.6e-100 370.2 222 88.3
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 6.9e-96 354.8 333 63.4
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 7.7e-95 351.3 319 63.6
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 9.4e-93 344.4 227 78.9
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 1.2e-92 344.0 337 59.1
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.1e-92 343.2 227 78.4
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 3.6e-92 342.4 224 79.9
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 4.7e-92 342.0 227 78.4
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 3.9e-91 339.0 226 79.6
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 3.9e-91 339.0 231 76.6
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 3.9e-91 339.0 232 76.3
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 3.9e-91 339.0 238 77.7
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 6.7e-91 338.2 236 75.8
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 8.8e-91 337.8 227 76.7
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 1.1e-90 337.4 234 76.5
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 1.1e-90 337.4 332 61.1
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 1.5e-90 337.0 226 78.8
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 1.5e-90 337.0 236 75.8
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 2.6e-90 336.3 234 74.4
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 2.6e-90 336.3 229 77.3
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 3.3e-90 335.9 224 78.1
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 3.3e-90 335.9 232 76.7
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 5.7e-90 335.1 316 61.7
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 9.7e-90 334.3 226 78.3
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 9.7e-90 334.3 280 65.4
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 9.7e-90 334.3 223 76.7
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 1.3e-89 334.0 316 62.3
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 1.7e-89 333.6 224 76.3
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 2.2e-89 333.2 213 81.2
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 2.2e-89 333.2 231 76.6
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 2.8e-89 332.8 234 73.9
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 3.7e-89 332.4 288 64.9
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 4.8e-89 332.0 226 74.8
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 4.8e-89 332.0 234 73.9
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 6.3e-89 331.6 310 61.0
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 6.3e-89 331.6 310 61.0
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 6.3e-89 331.6 228 76.8
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 6.3e-89 331.6 234 73.9
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 6.3e-89 331.6 226 75.7
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 8.2e-89 331.3 223 78.0
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 1.1e-88 330.9 223 77.1
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 1.1e-88 330.9 226 76.5
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 1.1e-88 330.9 227 76.2
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.4e-88 330.5 235 73.6
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 1.8e-88 330.1 222 77.9
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 1.8e-88 330.1 226 75.2
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 2.4e-88 329.7 237 73.4
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 2.4e-88 329.7 228 75.4
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 4.1e-88 328.9 229 76.0
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 5.3e-88 328.6 232 75.4
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 6.9e-88 328.2 222 76.1
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 6.9e-88 328.2 236 72.5
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 9.1e-88 327.8 229 74.2
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 1.2e-87 327.4 222 76.1
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.2e-87 327.4 235 73.2
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 1.2e-87 327.4 224 75.0
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 1.2e-87 327.4 226 74.3
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.5e-87 327.0 236 74.2
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 2.6e-87 326.2 320 61.2
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 3.4e-87 325.9 272 65.8
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 3.4e-87 325.9 227 74.9
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 4.5e-87 325.5 236 73.7
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.3e-86 323.9 236 73.3
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.7e-86 323.6 221 76.5
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 2.9e-86 322.8 227 74.9
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 5.0e-86 322.0 237 72.2
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 5.0e-86 322.0 223 76.2
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 8.5e-86 321.2 223 74.9
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.4e-85 320.5 226 72.6
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 1.9e-85 320.1 227 74.0
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.5e-85 319.7 255 69.0
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 5.5e-85 318.5 228 72.8
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 7.2e-85 318.2 238 70.6
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 1.2e-84 317.4 291 60.1
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 1.6e-84 317.0 227 74.0
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 2.1e-84 316.6 227 74.0
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 2.1e-84 316.6 232 72.4
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 2.7e-84 316.2 234 71.4
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 6.1e-84 315.1 221 75.6
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 1.8e-83 313.5 227 72.7
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 3.0e-83 312.8 227 72.7
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 3.9e-83 312.4 220 74.1
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 3.9e-83 312.4 288 61.1
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 2.0e-82 310.1 218 74.3
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 3.3e-82 309.3 227 71.8
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 4.4e-82 308.9 228 71.5
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 5.7e-82 308.5 228 71.5
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 7.4e-82 308.1 227 71.4
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 1.7e-81 307.0 221 73.8
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 3.7e-81 305.8 265 65.3
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 3.7e-81 305.8 221 72.4
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 6.3e-81 305.1 213 75.1
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 8.2e-81 304.7 221 73.3
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 9.1e-80 301.2 270 60.4
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 2.6e-79 299.7 297 59.6
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 4.5e-79 298.9 218 71.1
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 5.9e-79 298.5 232 68.5
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 7.7e-79 298.1 221 70.6
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 1.0e-78 297.7 220 70.5
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 2.2e-78 296.6 252 63.9
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 3.8e-78 295.8 229 70.3
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.5e-77 293.1 218 70.6
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 7.2e-77 291.6 223 68.6
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 2.0e-74 283.5 233 65.2
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 4.4e-74 282.3 177 79.7
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 9.7e-74 281.2 177 82.5
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.3e-73 280.8 213 71.8
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.8e-72 276.9 218 65.6
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 9.4e-69 264.6 190 74.7
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.7e-68 263.1 169 80.5
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 7.0e-64 248.4 166 77.7
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.3e-62 244.2 205 66.8
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 3.8e-62 242.7 239 59.8
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.3e-61 239.6 190 70.5
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 5.5e-61 238.8 188 68.6
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 6.1e-60 235.3 173 73.4
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 9.8e-58 228.0 214 60.3
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 9.8e-58 228.0 227 57.3
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 9.8e-58 228.0 227 57.3
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 2.8e-57 226.5 194 62.9
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 1.4e-56 224.2 313 46.3
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 9.2e-56 221.5 169 71.6
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.7e-55 219.9 222 56.3
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 4.5e-55 219.2 165 72.7
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 5.0e-54 215.7 160 71.9
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 2.6e-50 203.4 211 55.0
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 1.8e-48 197.2 185 56.8
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 1.3e-46 191.0 186 54.3
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 1.5e-45 187.6 155 63.2
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 1.4e-43 181.0 355 37.5
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 6.6e-30 135.6 274 33.9
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 2.8e-28 130.2 223 39.0
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 3.2e-24 116.7 68 82.4
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 1.2e-20 104.8 230 32.6
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 2.0e-18 97.4 198 35.4
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 1.7e-17 94.4 235 31.9
BcaB04g18771 Brassica carinata HOM05D004368 ORTHO05D004990 5.4e-16 89.4 65 75.4
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 8.7e-14 82.0 230 31.3
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 7.6e-10 68.9 42 73.8
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 7.6e-10 68.9 46 76.1
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 2.2e-09 67.4 82 51.2
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 2.9e-09 67.0 177 31.6
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 9.3e-08 62.0 41 75.6
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 7.9e-07 58.9 58 53.4


User provided reference genes

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