Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 1.1e-181 639.8 329 100.0
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 5.2e-166 587.8 313 95.8
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 5.2e-166 587.8 313 95.8
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 8.8e-166 587.0 313 95.8
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 5.7e-165 584.3 313 95.8
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 9.7e-165 583.6 312 95.5
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 4.0e-158 561.6 320 90.3
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 1.2e-157 560.1 320 90.9
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 1.2e-157 560.1 320 90.9
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 1.2e-157 560.1 320 90.9
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 4.4e-157 558.1 320 91.2
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 4.4e-157 558.1 320 91.2
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.8e-155 552.7 323 89.2
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 1.3e-153 546.6 321 89.1
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 1.3e-153 546.6 321 89.1
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 1.3e-153 546.6 321 89.1
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 2.1e-151 539.3 321 88.8
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 2.1e-151 539.3 323 87.6
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 8.0e-151 537.3 323 87.6
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 1.8e-150 536.2 314 89.2
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 2.0e-149 532.7 320 87.5
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 9.8e-149 530.4 323 86.7
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 2.0e-146 522.7 337 81.9
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 5.2e-142 508.1 324 83.6
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 4.4e-141 505.0 323 80.2
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.2e-140 502.7 320 81.9
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 8.3e-140 500.7 321 81.0
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 7.8e-138 494.2 324 79.0
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 4.9e-132 474.9 320 79.4
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 8.1e-127 457.6 306 76.8
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.4e-123 446.8 322 74.2
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 3.0e-89 332.8 333 54.4
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 8.7e-89 331.3 324 55.6
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 1.1e-88 330.9 322 55.6
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.1e-88 330.9 323 54.2
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 9.6e-88 327.8 323 53.9
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 3.7e-87 325.9 323 53.6
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.1e-86 324.3 320 54.7
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.1e-86 324.3 316 57.0
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 4.0e-86 322.4 316 53.8
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.0e-86 321.2 330 53.3
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 9.0e-86 321.2 316 54.1
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.0e-84 317.8 321 53.3
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 4.9e-84 315.5 325 51.1
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 3.2e-83 312.8 304 55.6
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 6.0e-82 308.5 320 52.8
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 2.3e-81 306.6 315 54.6
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 5.1e-81 305.4 318 55.0
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 1.5e-80 303.9 320 52.8
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 3.3e-80 302.8 301 53.2
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 4.3e-80 302.4 324 50.6
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.6e-79 300.4 330 51.5
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 8.2e-79 298.1 320 52.2
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.1e-78 297.7 324 50.0
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 2.0e-77 293.5 306 52.3
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 4.5e-77 292.4 321 51.4
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 4.5e-77 292.4 320 52.2
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 5.9e-77 292.0 324 49.4
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.0e-76 291.2 320 50.6
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 1.0e-76 291.2 320 50.6
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 1.3e-76 290.8 331 48.3
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 2.2e-76 290.0 320 49.7
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 6.5e-76 288.5 291 52.9
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 6.5e-76 288.5 215 73.0
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 5.5e-75 285.4 282 53.2
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 7.2e-75 285.0 324 50.0
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 9.4e-75 284.6 326 48.2
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 9.4e-75 284.6 324 47.5
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 1.6e-74 283.9 319 48.9
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 2.1e-74 283.5 324 48.8
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 2.7e-74 283.1 320 48.4
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 4.6e-74 282.3 322 48.4
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 7.9e-74 281.6 328 48.8
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 7.9e-74 281.6 362 48.1
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 1.4e-73 280.8 266 55.3
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 1.4e-73 280.8 316 49.4
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 2.3e-73 280.0 322 50.3
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 3.0e-73 279.6 317 49.5
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 5.1e-73 278.9 301 49.8
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 8.8e-73 278.1 324 49.4
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 1.1e-72 277.7 334 50.9
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 1.5e-72 277.3 322 50.0
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.5e-72 277.3 325 48.3
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 1.9e-72 276.9 320 48.8
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 2.5e-72 276.6 317 48.3
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 2.5e-72 276.6 323 47.7
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 9.7e-72 274.6 318 48.1
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 1.7e-71 273.9 319 48.0
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 1.7e-71 273.9 316 48.4
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 6.3e-71 271.9 318 48.1
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 6.3e-71 271.9 290 52.4
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 1.1e-70 271.2 317 47.0
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 2.4e-70 270.0 290 52.4
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 6.9e-70 268.5 324 46.3
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 6.9e-70 268.5 321 48.6
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 6.9e-70 268.5 317 47.6
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 1.2e-69 267.7 334 44.3
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 1.5e-69 267.3 321 45.5
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.5e-69 267.3 329 46.2
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 1.5e-69 267.3 319 47.3
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.5e-69 267.3 325 48.9
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 7.7e-69 265.0 325 48.6
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 1.0e-68 264.6 320 47.8
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 1.7e-68 263.8 322 46.0
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 2.2e-68 263.5 293 49.5
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 3.8e-68 262.7 318 48.7
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 5.0e-68 262.3 322 45.7
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 1.4e-67 260.8 298 47.7
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 5.5e-67 258.8 323 44.3
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 5.5e-67 258.8 290 48.6
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 7.2e-67 258.5 301 47.8
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.2e-66 257.7 333 45.0
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 1.2e-66 257.7 317 44.8
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 2.7e-66 256.5 321 46.1
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 6.1e-66 255.4 419 38.9
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 3.9e-65 252.7 323 44.0
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 5.1e-65 252.3 327 44.6
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 1.1e-64 251.1 308 47.4
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 1.5e-64 250.8 317 44.5
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 3.3e-64 249.6 318 45.3
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 2.2e-63 246.9 322 45.7
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 7.0e-62 241.9 407 41.3
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 3.4e-61 239.6 322 44.7
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 4.5e-61 239.2 324 43.5
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.0e-60 238.0 257 51.4
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 6.5e-60 235.3 313 43.5
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.1e-59 234.6 257 51.0
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 1.4e-59 234.2 324 42.6
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 1.9e-59 233.8 258 48.1
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 3.2e-59 233.0 315 44.1
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 4.2e-59 232.6 287 45.6
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 6.7e-57 225.3 310 41.9
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 3.3e-56 223.0 261 48.7
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.3e-55 221.1 312 41.7
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.7e-55 220.7 128 87.5
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 4.8e-55 219.2 128 86.7
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 4.5e-53 212.6 322 43.8
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 5.2e-49 199.1 343 38.8
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 8.8e-41 171.8 226 43.8
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 2.4e-38 163.7 119 73.1
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 3.1e-38 163.3 247 37.7
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 1.6e-34 151.0 330 31.5
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 1.2e-32 144.8 324 32.1
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 1.2e-32 144.8 155 51.0
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 2.0e-32 144.1 166 48.2
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 2.4e-30 137.1 161 49.7
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 5.4e-30 136.0 326 30.1
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 1.6e-29 134.4 316 32.6
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 3.0e-20 103.6 194 36.6
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 8.6e-20 102.1 119 48.7
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.0e-16 90.9 89 52.8
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.0e-16 90.9 89 52.8
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.6e-16 90.5 95 49.5
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 6.4e-15 85.9 99 47.5
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 9.2e-14 82.0 78 47.4
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 2.7e-13 80.5 73 49.3
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 2.7e-13 80.5 73 49.3
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 1.5e-11 74.7 73 45.2
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 2.5e-11 73.9 139 34.5
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 9.9e-08 62.0 105 39.0
Cre09.g392616 Chlamydomonas reinhardtii HOM05D004300 ORTHO05D005171 2.2e-07 60.8 318 20.8
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 5.4e-06 56.2 102 31.4


User provided reference genes

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