Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 0.0e+00 1416.4 741 100.0
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 0.0e+00 1341.3 744 95.3
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 0.0e+00 1303.1 744 93.4
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 0.0e+00 1280.4 773 88.9
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 0.0e+00 1167.5 683 89.8
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 0.0e+00 1151.0 683 90.8
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 0.0e+00 1133.2 684 87.1
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 0.0e+00 1124.8 684 86.7
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 0.0e+00 1117.4 672 87.5
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 0.0e+00 1103.6 765 80.9
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 4.1e-304 1047.7 690 79.9
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 9.1e-304 1046.6 763 76.9
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 9.1e-304 1046.6 763 76.9
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 2.1e-279 965.7 709 76.6
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 1.6e-271 939.5 702 72.5
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 3.4e-258 895.2 549 88.0
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 7.9e-255 884.0 756 63.1
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 1.5e-250 869.8 826 58.0
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 7.4e-245 850.9 809 59.0
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 7.1e-240 834.3 756 60.3
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 1.3e-238 830.1 748 59.6
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 1.3e-238 830.1 741 60.6
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 6.7e-238 827.8 748 59.8
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 6.2e-236 821.2 893 53.8
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 1.5e-234 816.6 698 61.9
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 2.0e-234 816.2 827 54.8
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 3.8e-233 812.0 755 58.3
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 6.1e-231 804.7 742 59.2
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 3.9e-230 802.0 757 56.9
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 2.5e-229 799.3 701 60.5
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 2.8e-228 795.8 725 59.9
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 3.7e-228 795.4 740 58.8
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 8.2e-228 794.3 733 58.4
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 1.8e-227 793.1 758 57.3
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 1.8e-227 793.1 747 56.2
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 2.4e-227 792.7 766 56.3
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 9.0e-227 790.8 763 56.9
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.4e-224 783.5 893 51.8
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 1.9e-224 783.1 751 56.9
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 2.5e-224 782.7 785 55.7
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 4.2e-224 781.9 484 87.6
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 9.4e-224 780.8 762 56.3
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 1.6e-223 780.0 723 57.8
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 1.8e-222 776.5 752 56.0
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 1.8e-222 776.5 737 57.0
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 3.0e-222 775.8 738 55.8
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 3.0e-222 775.8 755 55.8
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 6.7e-222 774.6 836 52.4
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 8.8e-222 774.2 737 56.2
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 1.1e-221 773.9 731 56.8
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 4.8e-220 768.5 742 56.1
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 1.1e-219 767.3 721 58.8
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 1.4e-219 766.9 732 56.7
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 3.1e-219 765.8 761 57.6
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 4.1e-219 765.4 741 57.4
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 5.3e-219 765.0 732 56.4
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 5.3e-219 765.0 748 55.7
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 5.3e-219 765.0 766 55.0
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 1.2e-218 763.8 731 56.8
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 2.0e-218 763.1 765 54.1
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 2.0e-218 763.1 741 56.1
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 3.4e-218 762.3 757 55.9
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 3.4e-218 762.3 768 56.2
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 3.8e-217 758.8 714 57.3
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 1.4e-216 756.9 739 55.6
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 7.2e-216 754.6 742 54.9
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 1.6e-215 753.4 733 56.3
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 4.7e-215 751.9 741 54.7
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 1.0e-214 750.7 681 57.3
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.8e-214 750.0 790 53.5
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 2.3e-214 749.6 724 56.4
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 6.7e-214 748.0 741 56.4
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 1.4e-211 740.3 756 54.4
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 3.1e-211 739.2 753 54.1
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 5.9e-210 734.9 764 54.2
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 3.8e-209 732.3 739 54.4
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 3.2e-208 729.2 690 56.4
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 4.7e-207 725.3 755 53.5
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 5.2e-206 721.8 703 54.6
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 6.7e-206 721.5 669 57.7
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 1.1e-205 720.7 812 51.5
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 2.6e-205 719.5 812 52.3
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 4.4e-205 718.8 778 53.7
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 1.3e-204 717.2 814 49.3
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 1.6e-202 710.3 776 52.6
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 4.5e-202 708.8 834 49.0
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 6.8e-198 694.9 452 78.8
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 2.0e-197 693.3 753 51.9
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 2.2e-196 689.9 753 51.5
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 2.0e-194 683.3 785 50.1
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 2.9e-193 679.5 765 50.6
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 5.0e-193 678.7 760 50.0
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 1.3e-185 654.1 714 49.6
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 6.1e-183 645.2 735 50.2
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 7.8e-178 628.2 732 49.3
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 8.6e-177 624.8 928 43.6
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 7.8e-170 601.7 715 47.8
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 1.7e-164 583.9 621 53.0
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.1e-163 581.3 631 53.2
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 1.2e-162 577.8 635 51.7
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 8.4e-156 555.1 435 65.1
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 6.0e-154 548.9 740 41.4
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 7.8e-154 548.5 669 47.1
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 1.0e-153 548.1 687 44.1
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 7.1e-147 525.4 835 38.2
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 9.9e-141 505.0 398 63.1
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 4.5e-133 479.6 614 46.4
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 2.2e-132 477.2 572 47.2
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 3.5e-122 443.4 503 52.9
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 6.1e-114 416.0 494 51.2
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 1.0e-97 362.1 588 40.1
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 7.4e-96 355.9 261 65.5
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 1.6e-90 338.2 484 45.9
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 8.6e-68 262.7 353 42.5
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 4.7e-66 256.9 195 65.6
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 4.6e-61 240.4 206 64.6
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 1.7e-55 221.9 173 65.9
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 5.0e-52 210.3 215 53.5
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 9.5e-43 179.5 118 70.3
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 2.2e-39 168.3 101 84.2
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 2.4e-38 164.9 144 57.6
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 1.2e-37 162.5 142 55.6
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 1.2e-37 162.5 142 57.0
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 1.5e-35 155.6 144 53.5
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 7.3e-35 153.3 698 24.8
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 9.6e-35 152.9 91 84.6
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 4.7e-34 150.6 99 69.7
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 7.6e-32 143.3 106 66.0
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 1.7e-31 142.1 101 68.3
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.0e-28 132.9 114 58.8
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 6.6e-28 130.2 86 67.4
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 2.1e-26 125.2 207 35.7
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 3.6e-26 124.4 159 41.5
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 2.9e-23 114.8 539 23.6
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.4e-22 112.5 74 67.6
A03p37430 Brassica napus HOM05D004031 ORTHO05D011186 1.6e-21 109.0 58 94.8
Carub.0003s1134 Capsella rubella HOM05D004031 ORTHO05D011186 2.1e-21 108.6 58 89.7
Aa31LG3G5450 Aethionema arabicum HOM05D004031 ORTHO05D011186 2.7e-21 108.2 58 86.2
Aa31LG3G5490 Aethionema arabicum HOM05D004031 ORTHO05D011186 7.9e-21 106.7 58 84.5
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 1.4e-17 95.9 158 35.4
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 4.9e-15 87.4 439 24.6
GSVIVG01033459001 Vitis vinifera HOM05D004031 ORTHO05D011186 3.2e-14 84.7 58 72.4
Potri.016G060550 Populus trichocarpa HOM05D004031 ORTHO05D011186 2.1e-13 82.0 58 65.5
Manes.09G038400 Manihot esculenta HOM05D004031 ORTHO05D011186 2.7e-13 81.6 58 67.2
CDE05G3199 Ceratophyllum demersum HOM05D004031 ORTHO05D011186 3.5e-13 81.3 58 69.0
Prupe.7G082600 Prunus persica HOM05D004031 ORTHO05D011186 3.5e-13 81.3 58 69.0
Migut.J01860 Erythranthe guttata HOM05D004031 ORTHO05D011186 7.9e-13 80.1 58 65.5
MD12G1054200 Malus domestica HOM05D004031 ORTHO05D011186 7.9e-13 80.1 58 67.2
Eucgr.K01857 Eucalyptus grandis HOM05D004031 ORTHO05D011186 1.0e-12 79.7 57 71.9
MELO3C009606.2 Cucumis melo HOM05D004031 ORTHO05D011186 2.3e-12 78.6 59 61.0
Thecc.05G176000 Theobroma cacao HOM05D004031 ORTHO05D011186 2.3e-12 78.6 58 67.2
Sed0024429 Sechium edule HOM05D004031 ORTHO05D011186 5.1e-12 77.4 57 63.2
CSS0013106 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D011186 8.7e-12 76.6 57 66.7
Nn7g35951 Nelumbo nucifera HOM05D004031 ORTHO05D011186 8.7e-12 76.6 54 66.7
Phvul.001G144800 Phaseolus vulgaris HOM05D004031 ORTHO05D011186 2.5e-11 75.1 58 63.8
Glyma.19G150500 Glycine max HOM05D004031 ORTHO05D011186 3.3e-11 74.7 55 67.3
Hma1.2p1_0124F.1_g058300 Hydrangea macrophylla HOM05D004031 ORTHO05D011186 3.3e-11 74.7 57 66.7
Gohir.D01G124600 Gossypium hirsutum HOM05D004031 ORTHO05D011186 4.3e-11 74.3 58 63.8
Nn7g36859 Nelumbo nucifera HOM05D004031 ORTHO05D011186 4.3e-11 74.3 54 68.5
RcHm_v2.0_Chr3g0479131 Rosa chinensis HOM05D004031 ORTHO05D011186 4.3e-11 74.3 58 62.1
CiPaw.09G027900 Carya illinoinensis HOM05D004031 ORTHO05D011186 5.6e-11 73.9 54 68.5
Duzib128G0401 Durio zibethinus HOM05D004031 ORTHO05D011186 5.6e-11 73.9 58 62.1
Lalb_Chr15g0079141 Lupinus albus HOM05D004031 ORTHO05D011186 9.6e-11 73.2 58 62.1
Gohir.A01G137400 Gossypium hirsutum HOM05D004031 ORTHO05D011186 1.3e-10 72.8 58 62.1
Lj1g0020490 Lotus japonicus HOM05D004031 ORTHO05D011186 1.3e-10 72.8 57 63.2
Medtr7g093770 Medicago truncatula HOM05D004031 ORTHO05D011186 1.6e-10 72.4 56 62.5
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 1.4e-09 69.3 58 56.9
Cc06_g15560 Coffea canephora HOM05D004031 ORTHO05D011186 2.4e-09 68.6 60 58.3
Glyma.03G147100 Glycine max HOM05D004031 ORTHO05D011186 9.0e-09 66.6 51 66.7
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.3e-07 62.8 46 56.5
Hund06156 Selenicereus undatus HOM05D000159 ORTHO05D011186 1.9e-06 58.9 42 64.3


User provided reference genes

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