Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18694 Brassica carinata HOM05D006205 ORTHO05D007703 7.0e-206 720.3 346 100.0
A05p37150 Brassica napus HOM05D006205 ORTHO05D007703 2.8e-186 655.2 338 93.5
C05p55580 Brassica napus HOM05D006205 ORTHO05D007703 2.8e-186 655.2 338 93.5
BolC5t34227H Brassica oleracea HOM05D006205 ORTHO05D007703 2.8e-186 655.2 338 93.5
Sp3g10390 Schrenkiella parvula HOM05D006205 ORTHO05D007703 6.2e-186 654.1 338 93.5
BraA05t22513Z Brassica rapa HOM05D006205 ORTHO05D007703 5.2e-185 651.0 338 92.6
BcaC05g29277 Brassica carinata HOM05D006205 ORTHO05D007703 8.9e-185 650.2 336 93.2
BcaC01g04062 Brassica carinata HOM05D006205 ORTHO05D007703 4.4e-184 647.9 339 93.5
Thhalv10021002m.g Eutrema salsugineum HOM05D006205 ORTHO05D007703 9.9e-184 646.7 339 91.4
A03p37470 Brassica napus HOM05D006205 ORTHO05D007703 2.2e-183 645.6 339 93.2
BraA03t12906Z Brassica rapa HOM05D006205 ORTHO05D007703 1.4e-182 642.9 337 93.5
C03p45470 Brassica napus HOM05D006205 ORTHO05D007703 5.4e-182 641.0 337 93.2
BolC3t16816H Brassica oleracea HOM05D006205 ORTHO05D007703 1.6e-181 639.4 337 92.9
AL3G23830 Arabidopsis lyrata HOM05D006205 ORTHO05D007703 6.0e-181 637.5 338 90.8
AT3G12150 Arabidopsis thaliana HOM05D006205 ORTHO05D007703 3.0e-180 635.2 338 90.5
Carub.0003s1152 Capsella rubella HOM05D006205 ORTHO05D007703 2.6e-176 622.1 338 88.8
THA.LOC104809921 Tarenaya hassleriana HOM05D006205 ORTHO05D007703 1.9e-171 605.9 336 86.0
Aa31LG3G6360 Aethionema arabicum HOM05D006205 ORTHO05D007703 1.3e-167 593.2 367 79.3
Gorai.002G228500 Gossypium raimondii HOM05D006205 ORTHO05D007703 3.3e-163 578.6 336 81.0
Potri.006G058400 Populus trichocarpa HOM05D006205 ORTHO05D007703 5.6e-163 577.8 335 81.8
Gohir.A01G194800 Gossypium hirsutum HOM05D006205 ORTHO05D007703 2.8e-162 575.5 336 80.4
Glyma.19G144900 Glycine max HOM05D006205 ORTHO05D007703 4.8e-162 574.7 336 80.7
Gohir.D01G185000 Gossypium hirsutum HOM05D006205 ORTHO05D007703 8.1e-162 573.9 336 80.4
PGR142G1368 Punica granatum HOM05D006205 ORTHO05D007703 8.1e-162 573.9 335 80.3
CSS0013544 Camellia sinensis var. sinensis HOM05D006205 ORTHO05D007703 2.4e-161 572.4 336 80.4
Ciclev10031918m.g Citrus clementina HOM05D006205 ORTHO05D007703 3.1e-161 572.0 336 80.4
Potri.016G049700 Populus trichocarpa HOM05D006205 ORTHO05D007703 3.1e-161 572.0 335 80.0
Thecc.05G167100 Theobroma cacao HOM05D006205 ORTHO05D007703 5.3e-161 571.2 336 80.4
Sabra06G0041700 Salix brachista HOM05D006205 ORTHO05D007703 6.9e-161 570.9 335 81.2
Manes.09G031300 Manihot esculenta HOM05D006205 ORTHO05D007703 9.0e-161 570.5 336 78.9
Eucgr.K01821 Eucalyptus grandis HOM05D006205 ORTHO05D007703 1.5e-160 569.7 336 80.4
Ca_08497_v3 Cicer arietinum L. HOM05D006205 ORTHO05D007703 9.9e-160 567.0 336 79.8
Ca_29722_v3 Cicer arietinum L. HOM05D006205 ORTHO05D007703 9.9e-160 567.0 336 79.8
Duzib106G0917 Durio zibethinus HOM05D006205 ORTHO05D007703 9.9e-160 567.0 336 79.8
Sabra16G0053600 Salix brachista HOM05D006205 ORTHO05D007703 1.3e-159 566.6 335 79.4
Prupe.7G072500 Prunus persica HOM05D006205 ORTHO05D007703 2.9e-159 565.5 336 79.2
CiPaw.09G032800 Carya illinoinensis HOM05D006205 ORTHO05D007703 3.8e-159 565.1 336 79.2
Phvul.001G139800 Phaseolus vulgaris HOM05D006205 ORTHO05D007703 3.8e-159 565.1 336 78.9
arahy.Tifrunner.gnm1.ann1.ARGW3J Arachis hypogaea HOM05D006205 ORTHO05D007703 1.1e-158 563.5 336 78.9
TAR623G1003 Trochodendron aralioides HOM05D006205 ORTHO05D007703 1.1e-158 563.5 335 80.0
arahy.Tifrunner.gnm1.ann1.68EW5P Arachis hypogaea HOM05D006205 ORTHO05D007703 2.4e-158 562.4 336 78.6
VMungo1383G0076 Vigna mungo HOM05D006205 ORTHO05D007703 2.4e-158 562.4 336 78.6
Actinidia17259 Actinidia chinensis HOM05D006205 ORTHO05D007703 3.2e-158 562.0 336 78.6
Cpa.g.sc85.111 Carica papaya HOM05D006205 ORTHO05D007703 4.2e-158 561.6 336 79.8
Haze_19942 Corylus avellana HOM05D006205 ORTHO05D007703 4.2e-158 561.6 335 79.4
TPR.G4691 Trifolium pratense HOM05D006205 ORTHO05D007703 5.4e-158 561.2 336 78.9
Dinv24098 Davidia involucrata HOM05D006205 ORTHO05D007703 9.3e-158 560.5 336 78.3
Lju124A32T75 Lonicera japonica HOM05D006205 ORTHO05D007703 1.6e-157 559.7 336 79.2
Lalb_Chr18g0047621 Lupinus albus HOM05D006205 ORTHO05D007703 1.6e-157 559.7 336 79.8
Psat3g069960 Pisum sativum HOM05D006205 ORTHO05D007703 2.7e-157 558.9 336 78.3
Hma1.2p1_1575F.1_g291620 Hydrangea macrophylla HOM05D006205 ORTHO05D007703 3.5e-157 558.5 336 77.4
Nitab4.5_0006846g0010 Nicotiana tabacum HOM05D006205 ORTHO05D007703 4.6e-157 558.1 336 77.1
MSTRG.26097 Avicennia marina HOM05D006205 ORTHO05D007703 6.0e-157 557.8 336 78.3
DCAR_013564 Daucus carota HOM05D006205 ORTHO05D007703 1.3e-156 556.6 336 78.0
SGA_v2.0_scaffold94G28443 Striga asiatica HOM05D006205 ORTHO05D007703 1.8e-156 556.2 336 78.9
Sed0025317 Sechium edule HOM05D006205 ORTHO05D007703 2.3e-156 555.8 336 78.6
Nn2g15532 Nelumbo nucifera HOM05D006205 ORTHO05D007703 3.0e-156 555.4 336 78.3
Duzib093G1988 Durio zibethinus HOM05D006205 ORTHO05D007703 3.9e-156 555.1 336 77.4
Hund19180 Selenicereus undatus HOM05D006205 ORTHO05D007703 8.7e-156 553.9 336 77.4
QL07p022686 Quercus lobata HOM05D006205 ORTHO05D007703 1.1e-155 553.5 336 78.6
FvH4_6g22800 Fragaria vesca HOM05D006205 ORTHO05D007703 2.5e-155 552.4 336 78.3
FAN14G5729 Fragaria x ananassa HOM05D006205 ORTHO05D007703 2.5e-155 552.4 336 78.3
Medtr7g092680 Medicago truncatula HOM05D006205 ORTHO05D007703 4.3e-155 551.6 336 78.0
FAN02G0014 Fragaria x ananassa HOM05D006205 ORTHO05D007703 5.6e-155 551.2 336 78.0
RcHm_v2.0_Chr3g0480421 Rosa chinensis HOM05D006205 ORTHO05D007703 5.6e-155 551.2 336 78.0
Lj1g0022121 Lotus japonicus HOM05D006205 ORTHO05D007703 9.6e-155 550.4 370 73.0
MELO3C009648.2 Cucumis melo HOM05D006205 ORTHO05D007703 3.7e-154 548.5 362 73.2
EL10Ac3g06974 Beta vulgaris HOM05D006205 ORTHO05D007703 8.1e-154 547.4 335 77.0
CANSAT64G2514 Cannabis sativa HOM05D006205 ORTHO05D007703 1.1e-153 547.0 335 77.6
CAN.G85.9 Capsicum annuum HOM05D006205 ORTHO05D007703 1.1e-153 547.0 336 75.9
Lsat_1_v5_gn_8_79241 Lactuca sativa HOM05D006205 ORTHO05D007703 3.1e-153 545.4 336 75.9
FAN05G5560 Fragaria x ananassa HOM05D006205 ORTHO05D007703 5.3e-153 544.7 336 77.4
AUR62024356 Chenopodium quinoa HOM05D006205 ORTHO05D007703 6.9e-153 544.3 336 76.5
PGSC0003DMG400012937 Solanum tuberosum HOM05D006205 ORTHO05D007703 1.2e-152 543.5 336 75.3
Migut.K00057 Erythranthe guttata HOM05D006205 ORTHO05D007703 3.4e-152 542.0 336 76.5
vmacro09103 Vaccinium macrocarpon HOM05D006205 ORTHO05D007703 7.6e-152 540.8 346 75.1
Sc25g0005160 Simmondsia chinensis HOM05D006205 ORTHO05D007703 3.8e-151 538.5 336 74.7
ClCG10G017350 Citrullus lanatus HOM05D006205 ORTHO05D007703 4.9e-151 538.1 403 66.7
Cc06_g16310 Coffea canephora HOM05D006205 ORTHO05D007703 4.9e-151 538.1 335 74.9
Aqoxy1G00212 Aquilegia oxysepala HOM05D006205 ORTHO05D007703 8.4e-151 537.3 336 75.6
SalBow1G2518 Salvia bowleyana HOM05D006205 ORTHO05D007703 8.4e-151 537.3 378 70.1
HanXRQChr05g0132791 Helianthus annuus HOM05D006205 ORTHO05D007703 2.4e-150 535.8 335 74.3
Sopen03g017680 Solanum pennellii HOM05D006205 ORTHO05D007703 5.5e-150 534.6 336 74.4
Solyc03g064030.3 Solanum lycopersicum HOM05D006205 ORTHO05D007703 9.3e-150 533.9 336 74.4
GSVIVG01033369001 Vitis vinifera HOM05D006205 ORTHO05D007703 9.3e-150 533.9 315 81.0
AUR62025960 Chenopodium quinoa HOM05D006205 ORTHO05D007703 7.9e-149 530.8 334 75.4
TWI74G1063 Tripterygium wilfordii HOM05D006205 ORTHO05D007703 1.3e-148 530.0 318 78.3
CDE10G0043 Ceratophyllum demersum HOM05D006205 ORTHO05D007703 1.1e-147 526.9 335 74.6
QL93p2022_0017 Quercus lobata HOM05D006205 ORTHO05D007703 1.1e-147 526.9 394 67.0
PSO384G4504 Papaver somniferum HOM05D006205 ORTHO05D007703 2.4e-145 519.2 335 73.4
ATR0605G163 Amborella trichopoda HOM05D006205 ORTHO05D007703 4.0e-145 518.5 335 73.7
PSO339G0108 Papaver somniferum HOM05D006205 ORTHO05D007703 1.3e-143 513.5 337 72.4
unitig_899.g15081 Utricularia gibba HOM05D006205 ORTHO05D007703 6.5e-143 511.1 337 72.1
SEGI_33856 Sequoiadendron giganteum HOM05D006205 ORTHO05D007703 6.7e-140 501.1 333 70.6
Zm00001eb236370 Zea mays HOM05D006205 ORTHO05D007703 1.6e-138 496.5 344 68.3
ECA236G0538 Erigeron canadensis HOM05D006205 ORTHO05D007703 3.4e-136 488.8 314 75.2
Os02g0195000 Oryza sativa ssp. japonica HOM05D006205 ORTHO05D007703 4.5e-136 488.4 344 66.0
Mapoly0096s0035 Marchantia polymorpha HOM05D006205 ORTHO05D007703 5.1e-132 474.9 334 67.4
Ah.13g076130 Amaranthus hybridus HOM05D006205 ORTHO05D007703 2.4e-129 466.1 349 66.8
SMO334G0020 Selaginella moellendorffii HOM05D006205 ORTHO05D007703 2.4e-129 466.1 333 66.7
Nitab4.5_0000016g0140 Nicotiana tabacum HOM05D006205 ORTHO05D007703 1.5e-128 463.4 336 67.3
Pp3c3_27370 Physcomitrium patens HOM05D006205 ORTHO05D007703 2.6e-128 462.6 333 67.0
MD12G1062300 Malus domestica HOM05D006205 ORTHO05D007703 5.0e-127 458.4 282 77.0
Cfa016888 Carpinus fangiana HOM05D006205 ORTHO05D007703 2.1e-125 453.0 280 77.9
AagrBONN_evm.TU.Sc2ySwM_228.3151 Anthoceros agrestis HOM05D006205 ORTHO05D007703 3.8e-119 432.2 334 63.2
CsaV3_3G039050 Cucumis sativus L. HOM05D006205 ORTHO05D007703 5.0e-119 431.8 250 82.4
Rhsim04G0098500 Rhododendron simsii HOM05D006205 ORTHO05D007703 1.2e-117 427.2 381 58.5
COL.COLO4_36119 Corchorus olitorius HOM05D006205 ORTHO05D007703 1.1e-115 420.6 241 83.0
CBR_g25855 Chara braunii HOM05D006205 ORTHO05D007703 1.7e-114 416.8 343 59.5
Peaxi162Scf00285g00443 Petunia axillaris HOM05D006205 ORTHO05D007703 5.7e-107 391.7 233 78.5
SalBow1G2557 Salvia bowleyana HOM05D006205 ORTHO05D007703 3.1e-105 386.0 346 59.5
HPP92_023778 Vanilla planifolia HOM05D006205 ORTHO05D007703 4.1e-105 385.6 239 76.2
CARHR086730 Cardamine hirsuta HOM05D006205 ORTHO05D007703 2.0e-104 383.3 206 90.3
Dinv18116 Davidia involucrata HOM05D006205 ORTHO05D007703 6.6e-87 325.1 188 78.7
Glyma.02G176500 Glycine max HOM05D006205 ORTHO05D007703 8.1e-69 265.0 164 79.3
MBI04_g47239_MAGBIO Magnolia biondii HOM05D006205 ORTHO05D007703 7.8e-48 195.3 135 67.4
MD14G1062700 Malus domestica HOM05D006205 ORTHO05D007703 5.8e-43 179.1 202 49.5
Cre02.g076150 Chlamydomonas reinhardtii HOM05D006205 ORTHO05D007703 7.6e-43 178.7 326 36.5
MBI04_g14269_MAGBIO Magnolia biondii HOM05D006205 ORTHO05D007703 1.4e-41 174.5 137 62.8
Actinidia33641 Actinidia chinensis HOM05D006205 ORTHO05D007703 2.7e-40 170.2 104 72.1
MD14G1062900 Malus domestica HOM05D006205 ORTHO05D007703 2.3e-39 167.2 104 71.2
arahy.Tifrunner.gnm1.ann1.EV0IJD Arachis hypogaea HOM05D006205 ORTHO05D007703 9.3e-33 145.2 124 61.3
VMungo1080G0431 Vigna mungo HOM05D006205 ORTHO05D007703 3.5e-32 143.3 98 74.5
MD12G1062200 Malus domestica HOM05D006205 ORTHO05D007703 1.6e-24 117.9 56 89.3
VMungo0331G0486 Vigna mungo HOM05D006205 ORTHO05D007703 6.3e-21 105.9 108 51.9
Medtr0001s0010 Medicago truncatula HOM05D006205 ORTHO05D007703 4.5e-19 99.8 79 62.0
BcaC01g04094 Brassica carinata HOM05D001227 ORTHO05D001082 5.9e-19 99.4 160 43.8
Rhsim04G0098400 Rhododendron simsii HOM05D000259 ORTHO05D000155 8.8e-15 85.5 39 87.2
MCO07G325 Micromonas commoda HOM05D006205 ORTHO05D007703 3.3e-06 57.0 202 27.7


User provided reference genes

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