Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18654 Brassica carinata HOM05D006689 ORTHO05D008349 4.6e-208 727.6 362 100.0
A03p37220 Brassica napus HOM05D006689 ORTHO05D008349 3.6e-176 621.7 367 86.6
AL3G23170 Arabidopsis lyrata HOM05D006689 ORTHO05D008349 8.2e-165 583.9 353 83.0
Carub.0003s1094 Capsella rubella HOM05D006689 ORTHO05D008349 9.1e-164 580.5 358 81.0
Thhalv10021180m.g Eutrema salsugineum HOM05D006689 ORTHO05D008349 1.4e-161 573.2 313 90.1
Sp3g09850 Schrenkiella parvula HOM05D006689 ORTHO05D008349 3.0e-159 565.5 312 89.1
C03p45070 Brassica napus HOM05D006689 ORTHO05D008349 8.8e-159 563.9 313 90.4
BcaC01g04099 Brassica carinata HOM05D006689 ORTHO05D008349 4.4e-158 561.6 307 91.5
Aa31LG3G5030 Aethionema arabicum HOM05D006689 ORTHO05D008349 7.4e-158 560.8 355 80.3
BraA03t12881Z Brassica rapa HOM05D006689 ORTHO05D008349 9.7e-158 560.5 301 93.4
A05p37720 Brassica napus HOM05D006689 ORTHO05D008349 1.7e-157 559.7 334 85.6
C05p56320 Brassica napus HOM05D006689 ORTHO05D008349 5.0e-154 548.1 313 87.5
CARHR086170 Cardamine hirsuta HOM05D006689 ORTHO05D008349 2.5e-153 545.8 311 87.1
BraA05t22567Z Brassica rapa HOM05D006689 ORTHO05D008349 2.3e-151 539.3 313 86.3
BcaB06g25602 Brassica carinata HOM05D006689 ORTHO05D008349 4.8e-149 531.6 317 83.9
BolC5t34296H Brassica oleracea HOM05D006689 ORTHO05D008349 1.3e-146 523.5 288 89.6
AT3G11620 Arabidopsis thaliana HOM05D006689 ORTHO05D008349 1.7e-141 506.5 288 86.8
BcaC05g29349 Brassica carinata HOM05D006689 ORTHO05D008349 3.5e-139 498.8 285 87.0
TWI74G1155 Tripterygium wilfordii HOM05D006689 ORTHO05D008349 1.5e-118 430.3 298 67.4
Lj1g0003895 Lotus japonicus HOM05D006689 ORTHO05D008349 5.4e-116 421.8 338 59.2
Psat3g030240 Pisum sativum HOM05D006689 ORTHO05D008349 2.7e-115 419.5 324 60.5
MD14G1035800 Malus domestica HOM05D006689 ORTHO05D008349 6.0e-115 418.3 325 61.2
Potri.016G072700 Populus trichocarpa HOM05D006689 ORTHO05D008349 6.0e-115 418.3 307 66.4
TPR.G23318 Trifolium pratense HOM05D006689 ORTHO05D008349 6.0e-115 418.3 344 59.9
Eucgr.A02606 Eucalyptus grandis HOM05D006689 ORTHO05D008349 1.9e-113 413.3 313 61.7
Aqoxy4G02685 Aquilegia oxysepala HOM05D006689 ORTHO05D008349 5.6e-113 411.8 358 56.7
QL07p037495 Quercus lobata HOM05D006689 ORTHO05D008349 1.2e-112 410.6 321 63.2
Lalb_Chr20g0111471 Lupinus albus HOM05D006689 ORTHO05D008349 2.1e-112 409.8 307 62.5
Duzib106G1273 Durio zibethinus HOM05D006689 ORTHO05D008349 3.6e-112 409.1 296 64.5
GSVIVG01033928001 Vitis vinifera HOM05D006689 ORTHO05D008349 4.7e-112 408.7 290 63.8
PGR004G2039 Punica granatum HOM05D006689 ORTHO05D008349 8.1e-112 407.9 290 64.1
TAR633G1471 Trochodendron aralioides HOM05D006689 ORTHO05D008349 1.4e-111 407.1 351 55.8
Cpa.g.sc104.62 Carica papaya HOM05D006689 ORTHO05D008349 3.1e-111 406.0 324 62.0
Atru.chr8.1397 Acer truncatum HOM05D006689 ORTHO05D008349 5.2e-111 405.2 299 64.5
Lalb_Chr01g0017911 Lupinus albus HOM05D006689 ORTHO05D008349 1.2e-110 404.1 325 60.0
Prupe.7G098300 Prunus persica HOM05D006689 ORTHO05D008349 3.4e-110 402.5 326 60.7
FvH4_6g19910 Fragaria vesca HOM05D006689 ORTHO05D008349 9.9e-110 401.0 298 62.1
Hma1.2p1_0064F.1_g034840 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 4.9e-109 398.7 295 62.7
Actinidia32058 Actinidia chinensis HOM05D006689 ORTHO05D008349 6.4e-109 398.3 323 58.5
Cc06_g06350 Coffea canephora HOM05D006689 ORTHO05D008349 5.4e-108 395.2 295 62.0
Gorai.009G398000 Gossypium raimondii HOM05D006689 ORTHO05D008349 5.4e-108 395.2 299 61.2
CSS0035173 Camellia sinensis var. sinensis HOM05D006689 ORTHO05D008349 7.1e-108 394.8 295 62.4
CANSAT64G2446 Cannabis sativa HOM05D006689 ORTHO05D008349 2.1e-107 393.3 299 61.2
QL07p037513 Quercus lobata HOM05D006689 ORTHO05D008349 7.8e-107 391.3 299 62.2
CiPaw.09G018700 Carya illinoinensis HOM05D006689 ORTHO05D008349 5.1e-106 388.7 319 59.6
Nn6g34760 Nelumbo nucifera HOM05D006689 ORTHO05D008349 3.3e-105 386.0 321 57.0
MD12G1034600 Malus domestica HOM05D006689 ORTHO05D008349 4.7e-104 382.1 280 66.4
Sopen01g003330 Solanum pennellii HOM05D006689 ORTHO05D008349 6.2e-104 381.7 308 58.8
PSO384G4437 Papaver somniferum HOM05D006689 ORTHO05D008349 8.1e-104 381.3 345 51.9
Solyc01g007790.4 Solanum lycopersicum HOM05D006689 ORTHO05D008349 1.8e-103 380.2 329 56.5
Sc07g0005680 Simmondsia chinensis HOM05D006689 ORTHO05D008349 2.0e-102 376.7 302 59.6
Cfa016668 Carpinus fangiana HOM05D006689 ORTHO05D008349 2.6e-102 376.3 304 60.2
PSO339G4581 Papaver somniferum HOM05D006689 ORTHO05D008349 4.4e-102 375.6 302 56.0
FAN14G3242 Fragaria x ananassa HOM05D006689 ORTHO05D008349 3.8e-101 372.5 298 59.1
FAN05G1672 Fragaria x ananassa HOM05D006689 ORTHO05D008349 3.2e-100 369.4 298 58.4
FAN02G4476 Fragaria x ananassa HOM05D006689 ORTHO05D008349 5.4e-100 368.6 298 59.1
Ciclev10011965m.g Citrus clementina HOM05D006689 ORTHO05D008349 3.5e-99 365.9 331 54.7
Oeu017715.1 Olea europaea HOM05D006689 ORTHO05D008349 4.6e-99 365.5 341 53.7
DCAR_013430 Daucus carota HOM05D006689 ORTHO05D008349 1.7e-98 363.6 328 54.6
CsaV3_6G040970 Cucumis sativus L. HOM05D006689 ORTHO05D008349 3.9e-98 362.5 295 57.3
HanXRQChr13g0398201 Helianthus annuus HOM05D006689 ORTHO05D008349 2.5e-97 359.8 309 56.0
arahy.Tifrunner.gnm1.ann1.YAPI8V Arachis hypogaea HOM05D006689 ORTHO05D008349 1.2e-96 357.5 322 54.0
Phvul.001G194040 Phaseolus vulgaris HOM05D006689 ORTHO05D008349 4.7e-96 355.5 282 60.6
ECA233G1524 Erigeron canadensis HOM05D006689 ORTHO05D008349 1.1e-95 354.4 278 58.6
SEGI_26711 Sequoiadendron giganteum HOM05D006689 ORTHO05D008349 3.1e-95 352.8 298 55.7
Zm00001eb362600 Zea mays HOM05D006689 ORTHO05D008349 5.2e-95 352.1 296 56.4
HPP92_023075 Vanilla planifolia HOM05D006689 ORTHO05D008349 2.6e-94 349.7 297 57.2
MBI17_g00993_MAGBIO Magnolia biondii HOM05D006689 ORTHO05D008349 9.9e-94 347.8 346 51.7
Rhsim03G0067100 Rhododendron simsii HOM05D006689 ORTHO05D008349 1.2e-91 340.9 461 42.1
Medtr7g105800 Medicago truncatula HOM05D006689 ORTHO05D008349 6.0e-91 338.6 235 66.4
Sed0011891 Sechium edule HOM05D006689 ORTHO05D008349 1.0e-90 337.8 258 61.2
FAN09G0196 Fragaria x ananassa HOM05D006689 ORTHO05D008349 1.6e-88 330.5 390 44.9
Nitab4.5_0000665g0040 Nicotiana tabacum HOM05D006689 ORTHO05D008349 2.4e-87 326.6 327 50.8
Haze_19679 Corylus avellana HOM05D006689 ORTHO05D008349 6.9e-87 325.1 342 52.0
Peaxi162Scf00419g00069 Petunia axillaris HOM05D006689 ORTHO05D008349 6.9e-87 325.1 312 53.2
Gohir.D04G095300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 1.5e-86 323.9 247 61.9
RcHm_v2.0_Chr3g0475311 Rosa chinensis HOM05D006689 ORTHO05D008349 2.0e-86 323.6 235 63.0
ATR0772G132 Amborella trichopoda HOM05D006689 ORTHO05D008349 5.8e-86 322.0 256 59.8
ClCG04G010350 Citrullus lanatus HOM05D006689 ORTHO05D008349 1.7e-85 320.5 295 53.2
arahy.Tifrunner.gnm1.ann1.ZIE5B9 Arachis hypogaea HOM05D006689 ORTHO05D008349 1.4e-84 317.4 322 49.4
Lsat_1_v5_gn_6_35180 Lactuca sativa HOM05D006689 ORTHO05D008349 1.9e-84 317.0 279 53.4
Pp3c13_7330 Physcomitrium patens HOM05D006689 ORTHO05D008349 3.5e-83 312.8 295 52.5
Sabra16G0075500 Salix brachista HOM05D006689 ORTHO05D008349 1.1e-81 307.8 347 50.4
Migut.L01819 Erythranthe guttata HOM05D006689 ORTHO05D008349 2.5e-81 306.6 238 59.7
FAN05G0890 Fragaria x ananassa HOM05D006689 ORTHO05D008349 2.1e-80 303.5 265 55.5
Manes.09G048600 Manihot esculenta HOM05D006689 ORTHO05D008349 1.4e-76 290.8 231 63.2
Nitab4.5_0000020g0370 Nicotiana tabacum HOM05D006689 ORTHO05D008349 1.6e-75 287.3 232 56.9
SMO272G0021 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 7.4e-73 278.5 284 47.9
CAN.G574.36 Capsicum annuum HOM05D006689 ORTHO05D008349 1.7e-69 267.3 209 58.9
SMO165G0131 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 1.6e-67 260.8 309 43.4
SalBow5G2063 Salvia bowleyana HOM05D006689 ORTHO05D008349 3.5e-67 259.6 327 44.3
Thecc.05G100700 Theobroma cacao HOM05D006689 ORTHO05D008349 6.7e-66 255.4 203 60.1
Hma1.2p1_0064F.1_g034850 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 8.7e-66 255.0 200 61.0
BolC3t16769H Brassica oleracea HOM05D006689 ORTHO05D008349 1.1e-60 238.0 126 91.3
CDE02G4301 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 4.8e-56 222.6 171 61.4
Glyma.03G200300 Glycine max HOM05D006689 ORTHO05D008349 4.2e-52 209.5 143 69.2
AUR62037035 Chenopodium quinoa HOM05D006689 ORTHO05D008349 3.9e-50 203.0 192 52.6
Hund19873 Selenicereus undatus HOM05D006689 ORTHO05D008349 2.0e-49 200.7 316 39.6
MELO3C024575.2 Cucumis melo HOM05D006689 ORTHO05D008349 1.4e-47 194.5 302 39.7
EL10Ac7g16816 Beta vulgaris HOM05D006689 ORTHO05D008349 4.1e-47 193.0 141 63.1
AUR62006266 Chenopodium quinoa HOM05D006689 ORTHO05D008349 1.2e-46 191.4 192 50.0
PGSC0003DMG400016416 Solanum tuberosum HOM05D006689 ORTHO05D008349 1.3e-45 188.0 144 58.3
Gohir.A04G061300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 4.7e-43 179.5 102 75.5
Glyma.19G197900 Glycine max HOM05D006689 ORTHO05D008349 8.0e-43 178.7 297 35.0
vmacro07460 Vaccinium macrocarpon HOM05D006689 ORTHO05D008349 2.6e-41 173.7 426 31.0
unitig_22.g6018 Utricularia gibba HOM05D006689 ORTHO05D008349 6.3e-40 169.1 225 37.3
Gohir.A04G061585 Gossypium hirsutum HOM05D006689 ORTHO05D008349 1.8e-39 167.5 133 55.6
Aa31LG3G5020 Aethionema arabicum HOM05D006689 ORTHO05D008349 2.6e-38 163.7 79 93.7
COL.COLO4_29616 Corchorus olitorius HOM05D006689 ORTHO05D008349 8.8e-34 148.7 83 77.1
SGA_v2.0_scaffold184G40008 Striga asiatica HOM05D006689 ORTHO05D008349 6.3e-32 142.5 101 59.4
Actinidia03903 Actinidia chinensis HOM05D006689 ORTHO05D008349 9.4e-28 128.6 140 51.4
Ah.08g210180 Amaranthus hybridus HOM05D006689 ORTHO05D008349 2.1e-27 127.5 74 74.3
MCO04G525 Micromonas commoda HOM05D006689 ORTHO05D008349 1.8e-26 124.4 263 31.2
CDE02G1185 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 7.5e-25 119.0 93 53.8
PRCOL_00001274 Prasinoderma coloniale HOM05D006689 ORTHO05D008349 1.6e-22 111.3 291 29.9
Cre09.g388319 Chlamydomonas reinhardtii HOM05D006689 ORTHO05D008349 4.2e-20 103.2 343 27.1
RcHm_v2.0_Chr3g0475321 Rosa chinensis HOM05D006689 ORTHO05D008349 1.6e-14 84.7 68 57.4
Hma1.2p1_1624F.1_g294270 Hydrangea macrophylla HOM05D000554 ORTHO05D000860 1.3e-08 65.1 42 64.3
Sabra16G0075600 Salix brachista HOM05D006689 ORTHO05D008349 3.7e-08 63.5 46 58.7


User provided reference genes

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