Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18629 Brassica carinata HOM05D014735 ORTHO05D015941 2.1e-71 272.3 141 100.0
C03p44820 Brassica napus HOM05D000300 ORTHO05D021402 8.7e-54 213.8 149 79.9
BolC3t16746H Brassica oleracea HOM05D000300 ORTHO05D013472 8.7e-54 213.8 149 79.9
C03p44850 Brassica napus HOM05D000300 ORTHO05D013472 1.3e-49 199.9 170 66.5
BcaB04g18632 Brassica carinata HOM05D000300 ORTHO05D016697 1.7e-41 172.9 176 59.7
BcaC01g04130 Brassica carinata HOM05D000300 ORTHO05D021402 3.0e-38 162.2 163 58.3
BolC3t16745H Brassica oleracea HOM05D000300 ORTHO05D000383 3.0e-38 162.2 163 58.3
BcaC01g04127 Brassica carinata HOM05D000300 ORTHO05D013472 5.0e-33 144.8 134 61.9
AL3G22860 Arabidopsis lyrata HOM05D000300 ORTHO05D013472 1.8e-30 136.3 175 50.9
BcaB04g18627 Brassica carinata HOM05D000300 ORTHO05D013472 3.9e-30 135.2 142 56.3
AT3G11380 Arabidopsis thaliana HOM05D000300 ORTHO05D013472 1.9e-29 132.9 174 50.0
Carub.0003s1068 Capsella rubella HOM05D000300 ORTHO05D013472 6.3e-28 127.9 175 46.9
CARHR100860 Cardamine hirsuta HOM05D000300 ORTHO05D013472 1.3e-25 120.2 175 46.9
BcaC01g04126 Brassica carinata HOM05D000300 ORTHO05D013472 9.4e-24 114.0 170 44.7
C03p44860 Brassica napus HOM05D000300 ORTHO05D013472 9.4e-24 114.0 170 44.7
BcaB04g18636 Brassica carinata HOM05D000300 ORTHO05D013472 1.6e-23 113.2 169 43.8
AL3G40150 Arabidopsis lyrata HOM05D000300 ORTHO05D013472 2.1e-23 112.8 152 47.4
A03p37020 Brassica napus HOM05D000300 ORTHO05D013472 3.6e-23 112.1 170 44.1
BraA03t12864Z Brassica rapa HOM05D000300 ORTHO05D013472 3.6e-23 112.1 170 44.1
C05p26670 Brassica napus HOM05D000300 ORTHO05D017381 4.5e-18 95.1 142 44.4
BolC5t31390H Brassica oleracea HOM05D000300 ORTHO05D017381 5.9e-18 94.7 161 41.0
AT1G43010 Arabidopsis thaliana HOM05D000300 ORTHO05D013482 1.7e-17 93.2 164 39.0
CARHR027480 Cardamine hirsuta HOM05D000300 ORTHO05D000383 1.7e-17 93.2 161 39.8
AL1G41540 Arabidopsis lyrata HOM05D000300 ORTHO05D017381 3.8e-17 92.0 134 45.5
AT1G28020 Arabidopsis thaliana HOM05D000300 ORTHO05D017381 3.8e-17 92.0 132 45.5
C07p10170 Brassica napus HOM05D038712 ORTHO05D016697 9.4e-16 87.4 131 45.8
AT3G11350 Arabidopsis thaliana HOM05D000300 ORTHO05D013472 2.1e-15 86.3 136 47.1
Carub.0001s0426 Capsella rubella HOM05D000300 ORTHO05D015941 2.1e-15 86.3 162 40.7
AL7G37910 Arabidopsis lyrata HOM05D000300 ORTHO05D012934 2.7e-15 85.9 167 36.5
BcaC06g36388 Brassica carinata HOM05D014735 ORTHO05D019949 7.9e-15 84.3 109 49.5
BolC7t40865H Brassica oleracea HOM05D014735 ORTHO05D019949 7.9e-15 84.3 109 49.5
Thhalv10009907m.g Eutrema salsugineum HOM05D000300 ORTHO05D017381 2.3e-14 82.8 132 41.7
BolC1t01041H Brassica oleracea HOM05D000300 ORTHO05D000383 5.2e-14 81.6 138 37.0
C01p10800 Brassica napus HOM05D000300 ORTHO05D000383 2.0e-13 79.7 138 36.2
Thhalv10012206m.g Eutrema salsugineum HOM05D000300 ORTHO05D013472 2.6e-13 79.3 142 43.7
BcaC05g26797 Brassica carinata HOM05D000300 ORTHO05D017381 9.7e-13 77.4 114 39.5
A01p09220 Brassica napus HOM05D000300 ORTHO05D000383 1.7e-12 76.6 138 34.8
BraA01t00865Z Brassica rapa HOM05D000300 ORTHO05D000383 1.7e-12 76.6 138 34.8
BraA09t39326Z Brassica rapa HOM05D000300 ORTHO05D017381 1.7e-12 76.6 99 47.5
Thhalv10027393m.g Eutrema salsugineum HOM05D000300 ORTHO05D000383 3.7e-12 75.5 138 37.7
BcaB07g30898 Brassica carinata HOM05D000300 ORTHO05D012934 6.3e-12 74.7 161 34.8
BraA09t39331Z Brassica rapa HOM05D000300 ORTHO05D013482 1.1e-11 73.9 173 30.6
A09p38180 Brassica napus HOM05D000300 ORTHO05D013482 1.8e-11 73.2 175 31.4
AL1G54230 Arabidopsis lyrata HOM05D000300 ORTHO05D012934 4.1e-11 72.0 120 35.0
Carub.0001s3674 Capsella rubella HOM05D000300 ORTHO05D012934 9.1e-11 70.9 130 38.5
BraA09t39325Z Brassica rapa HOM05D000300 ORTHO05D017381 1.6e-10 70.1 85 50.6
BolC5t31381H Brassica oleracea HOM05D000300 ORTHO05D013482 2.6e-10 69.3 107 34.6
AL1G54220 Arabidopsis lyrata HOM05D000300 ORTHO05D012934 4.5e-10 68.6 113 35.4
AT1G28000 Arabidopsis thaliana HOM05D000300 ORTHO05D013482 4.5e-10 68.6 137 29.9
BolC5t31382H Brassica oleracea HOM05D000300 ORTHO05D013482 7.7e-10 67.8 144 30.6
BraA09t39330Z Brassica rapa HOM05D000300 ORTHO05D013482 7.7e-10 67.8 142 30.3
CARHR027450 Cardamine hirsuta HOM05D000300 ORTHO05D013482 7.7e-10 67.8 137 29.9
BcaC05g26805 Brassica carinata HOM05D000300 ORTHO05D013482 1.0e-09 67.4 165 31.5
BcaC05g26612 Brassica carinata HOM05D000300 ORTHO05D013482 1.3e-09 67.0 176 29.5
C05p26630 Brassica napus HOM05D000300 ORTHO05D013482 1.3e-09 67.0 176 29.5
A09p38150 Brassica napus HOM05D000300 ORTHO05D013482 1.7e-09 66.6 144 29.9
Carub.0001s2645 Capsella rubella HOM05D000300 ORTHO05D013482 1.7e-09 66.6 137 29.2
C07p04640 Brassica napus HOM05D014735 ORTHO05D019949 5.0e-09 65.1 99 44.4
Thhalv10027559m.g Eutrema salsugineum HOM05D000300 ORTHO05D013472 1.5e-08 63.5 98 40.8
BcaC06g35873 Brassica carinata HOM05D000300 ORTHO05D016697 2.5e-08 62.8 88 46.6
Aa31LG8G17610 Aethionema arabicum HOM05D000300 ORTHO05D000383 4.2e-08 62.0 134 34.3
BcaC04g23562 Brassica carinata HOM05D014735 ORTHO05D016697 7.2e-08 61.2 80 47.5
BcaC05g26807 Brassica carinata HOM05D000300 ORTHO05D012934 9.4e-08 60.8 137 38.7
GSVIVG01020534001 Vitis vinifera HOM05D000300 ORTHO05D000383 9.4e-08 60.8 147 30.6
CARHR035800 Cardamine hirsuta HOM05D000300 ORTHO05D015941 1.2e-07 60.5 129 31.8
Lsat_1_v5_gn_4_65120 Lactuca sativa HOM05D000300 ORTHO05D000383 1.2e-07 60.5 171 27.5
BcaC05g26617 Brassica carinata HOM05D000300 ORTHO05D017381 1.6e-07 60.1 79 45.6
CARHR027470 Cardamine hirsuta HOM05D000300 ORTHO05D012934 3.6e-07 58.9 51 56.9
COL.COLO4_30181 Corchorus olitorius HOM05D000300 ORTHO05D000383 3.6e-07 58.9 157 27.4
Thhalv10001237m.g Eutrema salsugineum HOM05D000300 ORTHO05D015941 3.6e-07 58.9 108 33.3
QL08p038541 Quercus lobata HOM05D000300 ORTHO05D000383 4.7e-07 58.5 134 30.6
Sc12g0003030 Simmondsia chinensis HOM05D000300 ORTHO05D000383 4.7e-07 58.5 153 30.1
QL07p025828 Quercus lobata HOM05D000300 ORTHO05D000383 8.0e-07 57.8 139 29.5
THA.LOC104824703 Tarenaya hassleriana HOM05D000300 ORTHO05D000383 8.0e-07 57.8 139 29.5
Potri.013G132500 Populus trichocarpa HOM05D000300 ORTHO05D000383 1.4e-06 57.0 134 29.1
Thhalv10009763m.g Eutrema salsugineum HOM05D000300 ORTHO05D013482 2.3e-06 56.2 164 23.2


User provided reference genes

Program Settings