Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18580 Brassica carinata HOM05D004711 ORTHO05D005594 7.7e-77 290.4 149 100.0
BcaB04g18579 Brassica carinata HOM05D004711 ORTHO05D005594 6.6e-60 234.2 142 86.6
BcaC01g04190 Brassica carinata HOM05D004711 ORTHO05D005594 1.5e-51 206.5 142 79.6
C03p44020 Brassica napus HOM05D004711 ORTHO05D005594 1.5e-51 206.5 142 79.6
BolC3t16673H Brassica oleracea HOM05D004711 ORTHO05D005594 1.5e-51 206.5 142 79.6
A03p36410 Brassica napus HOM05D004711 ORTHO05D005594 2.9e-47 192.2 127 83.5
BcaB04g18575 Brassica carinata HOM05D004711 ORTHO05D005594 5.6e-43 177.9 127 78.0
Thhalv10020404m.g Eutrema salsugineum HOM05D004711 ORTHO05D005594 1.2e-42 176.8 142 69.0
BraA03t12809Z Brassica rapa HOM05D004711 ORTHO05D005594 1.8e-41 172.9 127 78.7
Sp3g07110 Schrenkiella parvula HOM05D004711 ORTHO05D005594 8.9e-41 170.6 128 73.4
BcaC05g29601 Brassica carinata HOM05D004711 ORTHO05D005594 1.2e-40 170.2 143 67.1
BolC5t34578H Brassica oleracea HOM05D004711 ORTHO05D005594 1.5e-40 169.9 143 67.1
C05p59190 Brassica napus HOM05D004711 ORTHO05D005594 2.6e-40 169.1 143 66.4
A05p40110 Brassica napus HOM05D004711 ORTHO05D005594 9.9e-40 167.2 145 66.2
Carub.0003s0780 Capsella rubella HOM05D004711 ORTHO05D005594 2.2e-39 166.0 128 70.3
AT3G08670 Arabidopsis thaliana HOM05D004711 ORTHO05D005594 6.4e-39 164.5 128 71.1
AL3G19670 Arabidopsis lyrata HOM05D004711 ORTHO05D005594 1.1e-38 163.7 147 65.3
CARHR082970 Cardamine hirsuta HOM05D004711 ORTHO05D005594 1.9e-38 162.9 127 69.3
BcaC01g04191 Brassica carinata HOM05D004711 ORTHO05D005594 7.1e-38 161.0 82 100.0
BcaC05g29602 Brassica carinata HOM05D004711 ORTHO05D005594 3.0e-36 155.6 147 63.3
Aa31LG5G18710 Aethionema arabicum HOM05D004711 ORTHO05D005594 4.6e-29 131.7 125 64.0
THA.LOC104823329 Tarenaya hassleriana HOM05D004711 ORTHO05D005594 7.1e-22 107.8 126 52.4
Potri.006G110700 Populus trichocarpa HOM05D004711 ORTHO05D005594 6.6e-20 101.3 122 50.0
Potri.016G139500 Populus trichocarpa HOM05D004711 ORTHO05D005594 3.3e-19 99.0 122 48.4
TWI74G1298 Tripterygium wilfordii HOM05D004711 ORTHO05D005594 4.8e-18 95.1 127 46.5
Manes.08G169400 Manihot esculenta HOM05D004711 ORTHO05D005594 1.1e-17 94.0 125 46.4
Sabra06G0086000 Salix brachista HOM05D004711 ORTHO05D005594 1.1e-17 94.0 142 43.7
QL07p031674 Quercus lobata HOM05D004711 ORTHO05D005594 1.4e-17 93.6 127 43.3
Haze_21199 Corylus avellana HOM05D004711 ORTHO05D005594 1.8e-17 93.2 127 44.9
Medtr7g073720 Medicago truncatula HOM05D004711 ORTHO05D005594 1.8e-17 93.2 124 45.2
Sabra04G0156000 Salix brachista HOM05D004711 ORTHO05D005594 1.8e-17 93.2 122 47.5
Sed0027783 Sechium edule HOM05D004711 ORTHO05D005594 4.0e-17 92.0 132 45.5
Duzib268G1837 Durio zibethinus HOM05D004711 ORTHO05D005594 5.3e-17 91.7 125 44.8
Phvul.008G080400 Phaseolus vulgaris HOM05D004711 ORTHO05D005594 6.9e-17 91.3 139 41.7
Ciclev10011470m.g Citrus clementina HOM05D004711 ORTHO05D005594 1.5e-16 90.1 127 45.7
Cpa.g.sc72.61 Carica papaya HOM05D004711 ORTHO05D005594 2.0e-16 89.7 122 45.9
Ca_07784_v3 Cicer arietinum L. HOM05D004711 ORTHO05D005594 2.6e-16 89.4 129 42.6
Glyma.09G272800 Glycine max HOM05D004711 ORTHO05D005594 2.6e-16 89.4 124 43.5
Gohir.A03G087100 Gossypium hirsutum HOM05D004711 ORTHO05D005594 3.4e-16 89.0 127 44.1
VMungo1383G3052 Vigna mungo HOM05D004711 ORTHO05D005594 4.5e-16 88.6 131 43.5
Glyma.18G216300 Glycine max HOM05D004711 ORTHO05D005594 7.6e-16 87.8 124 43.5
Gohir.D02G002600 Gossypium hirsutum HOM05D004711 ORTHO05D005594 7.6e-16 87.8 125 46.4
Gorai.005G003100 Gossypium raimondii HOM05D004711 ORTHO05D005594 7.6e-16 87.8 125 46.4
Gohir.A02G002300 Gossypium hirsutum HOM05D004711 ORTHO05D005594 9.9e-16 87.4 125 46.4
COL.COLO4_21250 Corchorus olitorius HOM05D004711 ORTHO05D005594 1.7e-15 86.7 127 43.3
TPR.G24318 Trifolium pratense HOM05D004711 ORTHO05D005594 1.7e-15 86.7 123 46.3
arahy.Tifrunner.gnm1.ann1.C9I5IG Arachis hypogaea HOM05D004711 ORTHO05D005594 4.9e-15 85.1 142 38.7
arahy.Tifrunner.gnm1.ann1.QFH4DU Arachis hypogaea HOM05D004711 ORTHO05D005594 4.9e-15 85.1 142 38.7
Gorai.005G121000 Gossypium raimondii HOM05D004711 ORTHO05D005594 4.9e-15 85.1 127 42.5
Lj1g0020419 Lotus japonicus HOM05D004711 ORTHO05D005594 4.9e-15 85.1 133 44.4
RcHm_v2.0_Chr3g0460111 Rosa chinensis HOM05D004711 ORTHO05D005594 4.9e-15 85.1 143 38.5
CSS0021593 Camellia sinensis var. sinensis HOM05D004711 ORTHO05D005594 6.4e-15 84.7 120 45.8
GSVIVG01029882001 Vitis vinifera HOM05D004711 ORTHO05D005594 6.4e-15 84.7 119 47.1
Actinidia11492 Actinidia chinensis HOM05D004711 ORTHO05D005594 8.4e-15 84.3 127 44.1
Thecc.04G149100 Theobroma cacao HOM05D004711 ORTHO05D005594 8.4e-15 84.3 127 41.7
Gohir.D02G106500 Gossypium hirsutum HOM05D004711 ORTHO05D005594 1.1e-14 84.0 127 42.5
Sc20g0007170 Simmondsia chinensis HOM05D004711 ORTHO05D005594 1.1e-14 84.0 122 45.1
Hma1.2p1_0537F.1_g174195 Hydrangea macrophylla HOM05D004711 ORTHO05D005594 1.4e-14 83.6 134 42.5
Actinidia29018 Actinidia chinensis HOM05D004711 ORTHO05D005594 1.9e-14 83.2 124 45.2
HanXRQChr10g0287631 Helianthus annuus HOM05D004711 ORTHO05D005594 1.9e-14 83.2 124 42.7
THA.LOC104816161 Tarenaya hassleriana HOM05D004711 ORTHO05D005594 1.9e-14 83.2 126 47.6
THA.LOC104816162 Tarenaya hassleriana HOM05D004711 ORTHO05D005594 1.9e-14 83.2 126 47.6
THA.LOC104816163 Tarenaya hassleriana HOM05D004711 ORTHO05D005594 1.9e-14 83.2 126 47.6
TWI53G0370 Tripterygium wilfordii HOM05D004711 ORTHO05D005594 2.4e-14 82.8 127 41.7
Ah.15g089840 Amaranthus hybridus HOM05D004711 ORTHO05D005594 3.2e-14 82.4 127 43.3
EL10Ac7g17131 Beta vulgaris HOM05D004711 ORTHO05D005594 3.2e-14 82.4 141 42.6
Manes.09G122600 Manihot esculenta HOM05D004711 ORTHO05D005594 7.1e-14 81.3 126 44.4
Dinv16951 Davidia involucrata HOM05D004711 ORTHO05D005594 1.6e-13 80.1 127 41.7
Duzib151G1091 Durio zibethinus HOM05D004711 ORTHO05D005594 1.6e-13 80.1 127 40.9
Hund03689 Selenicereus undatus HOM05D004711 ORTHO05D005594 1.6e-13 80.1 127 41.7
ECA247G0260 Erigeron canadensis HOM05D004711 ORTHO05D005594 2.1e-13 79.7 124 41.1
FAN02G0291 Fragaria x ananassa HOM05D004711 ORTHO05D005594 2.7e-13 79.3 143 37.8
Hma1.2p1_2237F.1_g317760 Hydrangea macrophylla HOM05D004711 ORTHO05D005594 2.7e-13 79.3 149 36.9
FvH4_6g09520 Fragaria vesca HOM05D004711 ORTHO05D005594 3.5e-13 79.0 143 37.8
FAN09G1198 Fragaria x ananassa HOM05D004711 ORTHO05D005594 3.5e-13 79.0 143 37.8
FAN14G5267 Fragaria x ananassa HOM05D004711 ORTHO05D005594 3.5e-13 79.0 143 37.8
Sed0008721 Sechium edule HOM05D004711 ORTHO05D005594 3.5e-13 79.0 130 41.5
PGSC0003DMG400002318 Solanum tuberosum HOM05D004711 ORTHO05D005594 3.5e-13 79.0 119 43.7
Nn2g10244 Nelumbo nucifera HOM05D004711 ORTHO05D005594 4.6e-13 78.6 125 44.0
Prupe.6G296400 Prunus persica HOM05D004711 ORTHO05D005594 4.6e-13 78.6 115 41.7
CAN.G180.2 Capsicum annuum HOM05D004711 ORTHO05D005594 7.9e-13 77.8 118 42.4
Cc06_g00250 Coffea canephora HOM05D004711 ORTHO05D005594 1.3e-12 77.0 120 43.3
Actinidia32572 Actinidia chinensis HOM05D004711 ORTHO05D005594 2.3e-12 76.3 124 42.7
FAN05G2346 Fragaria x ananassa HOM05D004711 ORTHO05D005594 2.3e-12 76.3 143 37.1
Peaxi162Scf00732g00135 Petunia axillaris HOM05D004711 ORTHO05D005594 2.3e-12 76.3 119 42.0
TAR633G0481 Trochodendron aralioides HOM05D004711 ORTHO05D005594 2.3e-12 76.3 120 43.3
MD04G1176700 Malus domestica HOM05D004711 ORTHO05D005594 3.0e-12 75.9 144 36.8
Nn1g01604 Nelumbo nucifera HOM05D004711 ORTHO05D005594 3.0e-12 75.9 125 44.0
PGR004G0084 Punica granatum HOM05D004711 ORTHO05D005594 5.1e-12 75.1 127 40.2
Rhsim05G0232600 Rhododendron simsii HOM05D004711 ORTHO05D005594 6.7e-12 74.7 125 40.8
Solyc09g031517.1 Solanum lycopersicum HOM05D004711 ORTHO05D005594 6.7e-12 74.7 120 44.2
Sopen09g013790 Solanum pennellii HOM05D004711 ORTHO05D005594 1.5e-11 73.6 120 44.2
Eucgr.K01295 Eucalyptus grandis HOM05D004711 ORTHO05D005594 1.9e-11 73.2 142 38.7
ECA248G3895 Erigeron canadensis HOM05D001126 ORTHO05D000991 3.3e-11 72.4 127 39.4
MD12G1191700 Malus domestica HOM05D004711 ORTHO05D005594 3.3e-11 72.4 144 36.1
CSS0008345 Camellia sinensis var. sinensis HOM05D004711 ORTHO05D005594 5.6e-11 71.6 128 40.6
CSS0041259 Camellia sinensis var. sinensis HOM05D004711 ORTHO05D005594 5.6e-11 71.6 128 40.6
AUR62029794 Chenopodium quinoa HOM05D004711 ORTHO05D005594 5.6e-11 71.6 118 43.2
AUR62006439 Chenopodium quinoa HOM05D004711 ORTHO05D005594 9.6e-11 70.9 118 43.2
Sabra06G0085900 Salix brachista HOM05D004711 ORTHO05D005594 1.3e-10 70.5 72 54.2
SGA_v2.0_scaffold85G26592 Striga asiatica HOM05D004711 ORTHO05D005594 1.3e-10 70.5 126 38.1
Lj2C57T4 Lonicera japonica HOM05D004711 ORTHO05D005594 2.1e-10 69.7 127 37.0
Lsat_1_v5_gn_9_39741 Lactuca sativa HOM05D004711 ORTHO05D005594 8.1e-10 67.8 121 37.2
TAR636G2556 Trochodendron aralioides HOM05D004711 ORTHO05D005594 8.1e-10 67.8 150 36.7
Lj3A939T103 Lonicera japonica HOM05D004711 ORTHO05D005594 1.8e-09 66.6 128 39.8
MSTRG.5483 Avicennia marina HOM05D004711 ORTHO05D005594 3.1e-09 65.9 119 38.7
ClCG04G006250 Citrullus lanatus HOM05D004711 ORTHO05D005594 4.0e-09 65.5 130 38.5
Psat3g118000 Pisum sativum HOM05D004711 ORTHO05D005594 4.0e-09 65.5 76 47.4
Phvul.010G058700 Phaseolus vulgaris HOM05D004711 ORTHO05D005594 5.3e-09 65.1 154 31.8
MELO3C025248.2 Cucumis melo HOM05D004711 ORTHO05D005594 6.9e-09 64.7 125 38.4
DCAR_015327 Daucus carota HOM05D004711 ORTHO05D005594 6.9e-09 64.7 131 39.7
Dinv25360 Davidia involucrata HOM05D004711 ORTHO05D005594 6.9e-09 64.7 76 50.0
Atru.chr8.78 Acer truncatum HOM05D004711 ORTHO05D005594 2.6e-08 62.8 147 34.0
CsaV3_4G027310 Cucumis sativus L. HOM05D004711 ORTHO05D005594 5.8e-08 61.6 130 36.2
Migut.J00018 Erythranthe guttata HOM05D004711 ORTHO05D005594 5.8e-08 61.6 118 37.3
Glyma.03G001700 Glycine max HOM05D004711 ORTHO05D005594 4.9e-07 58.5 126 34.9
VMungo0331G0284 Vigna mungo HOM05D004711 ORTHO05D005594 4.9e-07 58.5 145 31.7
Oeu030100.1 Olea europaea HOM05D004711 ORTHO05D005594 8.4e-07 57.8 139 34.5
Oeu026938.1 Olea europaea HOM05D004711 ORTHO05D005594 1.4e-06 57.0 121 33.1
Aqoxy4G03297 Aquilegia oxysepala HOM05D004711 ORTHO05D005594 1.9e-06 56.6 111 39.6
Glyma.16G220600 Glycine max HOM05D004711 ORTHO05D005594 2.4e-06 56.2 126 33.3
Oeu063842.1 Olea europaea HOM05D004711 ORTHO05D005594 7.1e-06 54.7 132 34.1


User provided reference genes

Program Settings