Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 2.0e-89 332.4 170 100.0
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 1.1e-87 326.6 170 98.2
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 3.1e-74 282.0 208 76.0
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 2.2e-72 275.8 208 73.6
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 2.2e-72 275.8 208 73.6
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 2.2e-72 275.8 208 73.6
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 1.9e-71 272.7 179 81.6
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 2.1e-70 269.2 204 72.5
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 2.3e-69 265.8 205 72.7
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 6.8e-69 264.2 208 72.1
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 2.6e-68 262.3 204 73.0
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 2.6e-68 262.3 171 80.7
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 7.2e-63 244.2 175 74.9
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 2.0e-60 236.1 174 77.0
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 5.7e-60 234.6 177 70.6
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 6.3e-59 231.1 179 68.2
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 1.8e-58 229.6 188 68.1
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 9.2e-58 227.3 172 69.2
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 1.2e-57 226.9 171 71.3
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 3.5e-57 225.3 171 70.8
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 1.0e-56 223.8 172 67.4
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 2.9e-56 222.2 177 66.1
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 6.6e-56 221.1 171 67.3
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 8.6e-56 220.7 175 67.4
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-55 220.3 176 67.0
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 1.1e-55 220.3 171 66.7
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 1.5e-55 219.9 171 67.8
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 1.5e-55 219.9 175 66.9
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 1.9e-55 219.5 177 67.2
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 2.5e-55 219.2 177 65.0
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 2.5e-55 219.2 171 67.3
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 3.3e-55 218.8 172 68.0
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 4.3e-55 218.4 176 66.5
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 4.3e-55 218.4 171 66.7
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 4.3e-55 218.4 171 67.3
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 4.3e-55 218.4 176 65.9
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 5.6e-55 218.0 171 67.3
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 5.6e-55 218.0 171 67.8
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 5.6e-55 218.0 170 65.9
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 7.3e-55 217.6 171 67.3
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 7.3e-55 217.6 171 66.7
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 9.5e-55 217.2 170 66.5
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 9.5e-55 217.2 173 67.1
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 1.2e-54 216.9 172 65.1
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 1.6e-54 216.5 170 67.1
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 1.6e-54 216.5 170 67.1
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 1.6e-54 216.5 177 65.5
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 1.6e-54 216.5 173 67.1
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 2.1e-54 216.1 170 66.5
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 2.1e-54 216.1 171 67.3
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 2.1e-54 216.1 172 66.3
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 2.8e-54 215.7 171 66.1
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 2.8e-54 215.7 171 66.7
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 3.6e-54 215.3 171 64.9
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 3.6e-54 215.3 177 65.5
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 3.6e-54 215.3 172 66.3
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 3.6e-54 215.3 171 67.3
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 4.7e-54 214.9 171 66.1
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 6.1e-54 214.5 171 65.5
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 6.1e-54 214.5 171 66.7
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 6.1e-54 214.5 171 66.7
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 6.1e-54 214.5 171 67.3
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.0e-53 213.8 171 63.7
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.0e-53 213.8 171 63.7
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 1.4e-53 213.4 172 64.5
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 1.8e-53 213.0 171 66.1
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 2.3e-53 212.6 170 65.9
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 2.3e-53 212.6 172 65.7
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 2.3e-53 212.6 171 66.1
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 2.3e-53 212.6 171 67.8
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 3.0e-53 212.2 171 64.3
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 4.0e-53 211.8 171 66.1
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 4.0e-53 211.8 171 67.3
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 4.0e-53 211.8 172 65.1
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 5.2e-53 211.5 172 66.9
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 6.8e-53 211.1 171 65.5
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 6.8e-53 211.1 171 66.7
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 6.8e-53 211.1 169 66.9
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 1.2e-52 210.3 172 64.5
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.5e-52 209.9 171 66.1
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 1.5e-52 209.9 171 64.3
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 2.6e-52 209.1 171 63.7
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 3.4e-52 208.8 170 65.3
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 4.4e-52 208.4 176 63.6
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 4.4e-52 208.4 171 64.3
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 7.5e-52 207.6 171 63.7
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 7.5e-52 207.6 170 65.3
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 1.3e-51 206.8 172 63.4
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 2.2e-51 206.1 172 62.8
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 8.3e-51 204.1 171 63.7
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 8.3e-51 204.1 171 64.9
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 1.1e-50 203.8 105 100.0
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 1.1e-50 203.8 171 64.3
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 1.4e-50 203.4 171 63.7
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 2.4e-50 202.6 176 62.5
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 2.4e-50 202.6 176 62.5
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 7.0e-50 201.1 172 62.8
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 9.2e-50 200.7 171 61.4
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 9.2e-50 200.7 176 63.6
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.2e-49 200.3 171 64.3
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 2.0e-49 199.5 192 58.9
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 9.5e-47 190.7 171 57.3
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 3.1e-45 185.7 171 55.6
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 5.8e-44 181.4 171 55.6
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 4.9e-43 178.3 171 54.4
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 8.6e-40 167.5 281 40.9
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.5e-39 166.8 136 66.9
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 9.2e-34 147.5 117 68.4
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.2e-33 147.1 96 79.2
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 2.1e-33 146.4 121 67.8
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.1e-33 146.4 104 75.0
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 2.1e-33 146.4 96 80.2
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 2.7e-33 146.0 104 76.9
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 3.5e-33 145.6 101 76.2
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 4.6e-33 145.2 98 75.5
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 7.8e-33 144.4 105 75.2
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 1.0e-32 144.1 104 75.0
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 1.3e-32 143.7 96 79.2
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 2.3e-32 142.9 96 75.0
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-31 140.2 104 73.1
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 3.3e-31 139.0 122 57.4
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 3.3e-31 139.0 102 74.5
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 4.3e-31 138.7 127 62.2
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 9.5e-31 137.5 95 76.8
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 2.8e-30 136.0 96 77.1
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 1.1e-29 134.0 101 69.3
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 4.0e-29 132.1 98 74.5
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 8.9e-29 131.0 96 74.0
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 2.6e-28 129.4 92 76.1
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 3.4e-28 129.0 109 70.6
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 7.6e-28 127.9 97 66.0
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 9.2e-26 120.9 104 66.3
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-23 113.2 72 81.9
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 3.3e-23 112.5 71 81.7
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 2.4e-21 106.3 121 54.5
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 2.4e-21 106.3 121 54.5
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 1.2e-20 104.0 69 73.9
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 1.5e-20 103.6 68 77.9
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 4.9e-19 98.6 88 59.1
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 6.4e-19 98.2 65 78.5
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 6.4e-19 98.2 69 73.9
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 7.1e-18 94.7 189 33.9
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-15 87.0 62 74.2
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 2.5e-15 86.3 57 78.9
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 2.0e-12 76.6 62 59.7
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 3.0e-08 62.8 44 77.3
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 5.1e-08 62.0 69 56.5


User provided reference genes

Program Settings